Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 7.4e-65 250.4 125 100.0
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.8e-61 238.0 125 93.6
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 8.0e-59 230.3 125 91.2
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 2.0e-57 225.7 125 88.8
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.7e-46 187.2 125 73.6
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.5e-44 181.0 125 74.4
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-43 179.9 126 73.8
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.6e-43 179.5 126 73.8
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.7e-43 178.7 126 73.0
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 8.0e-43 177.2 126 73.0
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 1.0e-42 176.8 126 72.2
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-42 176.4 125 72.0
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-42 176.0 126 72.2
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.3e-42 175.6 126 72.2
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-42 175.3 126 72.2
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-42 175.3 126 72.2
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 3.0e-42 175.3 126 72.2
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.0e-42 174.9 126 71.4
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 5.2e-42 174.5 126 72.2
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 5.2e-42 174.5 126 71.4
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 5.2e-42 174.5 126 72.2
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 5.2e-42 174.5 126 72.2
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 8.8e-42 173.7 126 71.4
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-41 173.3 126 71.4
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-41 173.3 126 71.4
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-41 173.3 126 71.4
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.2e-41 173.3 126 70.6
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 2.6e-41 172.2 126 70.6
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.4e-41 171.8 126 71.4
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 4.4e-41 171.4 126 69.0
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 5.7e-41 171.0 126 69.0
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 5.7e-41 171.0 126 69.0
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 5.7e-41 171.0 126 69.0
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.7e-40 168.3 126 68.3
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.7e-40 168.3 126 68.3
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 2.4e-39 165.6 126 67.5
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 5.7e-33 144.4 126 67.5
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 8.6e-29 130.6 127 59.8
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 7.3e-28 127.5 132 59.1
AT2G18200 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-22 110.2 80 72.5
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 1.1e-18 97.1 128 46.9
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 3.1e-18 95.5 124 46.0
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 3.1e-18 95.5 126 48.4
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.2e-17 93.6 143 44.1
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.2e-17 93.6 143 44.1
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.2e-17 93.6 131 49.6
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 2.0e-17 92.8 138 42.0
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 2.6e-17 92.4 128 46.1
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 3.4e-17 92.0 125 45.6
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 4.4e-17 91.7 104 50.0
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 4.4e-17 91.7 127 45.7
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 4.4e-17 91.7 127 42.5
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 7.5e-17 90.9 130 44.6
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 7.5e-17 90.9 130 40.8
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 7.5e-17 90.9 129 44.2
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 9.8e-17 90.5 143 43.4
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.3e-16 90.1 137 43.8
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 2.9e-16 89.0 144 40.3
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 2.9e-16 89.0 127 44.9
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 3.7e-16 88.6 136 44.1
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 8.3e-16 87.4 121 43.8
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 8.3e-16 87.4 141 41.8
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.1e-15 87.0 127 44.1
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 1.4e-15 86.7 136 45.6
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.4e-15 86.7 122 45.1
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.4e-15 86.7 134 44.8
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.4e-15 86.7 138 42.8
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.4e-15 86.7 130 45.4
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.9e-15 86.3 129 43.4
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 4.1e-15 85.1 126 42.9
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 5.4e-15 84.7 121 42.1
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.4e-15 84.7 134 43.3
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 5.4e-15 84.7 124 42.7
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 7.0e-15 84.3 122 42.6
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 7.0e-15 84.3 124 46.0
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 7.0e-15 84.3 120 46.7
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 7.0e-15 84.3 126 42.9
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 7.0e-15 84.3 125 43.2
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 9.2e-15 84.0 137 42.3
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 9.2e-15 84.0 128 44.5
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.2e-14 83.6 126 45.2
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.2e-14 83.6 125 45.6
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 3.5e-14 82.0 126 46.0
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 4.6e-14 81.6 122 40.2
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 4.6e-14 81.6 121 40.5
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 4.6e-14 81.6 124 42.7
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 6.0e-14 81.3 127 44.9
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 7.8e-14 80.9 126 45.2
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 1.0e-13 80.5 122 42.6
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.0e-13 80.5 128 43.8
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.3e-13 80.1 99 47.5
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 1.3e-13 80.1 126 43.7
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 2.3e-13 79.3 125 43.2
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 2.3e-13 79.3 125 41.6
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 3.9e-13 78.6 131 45.0
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.9e-13 78.6 124 44.4
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 6.6e-13 77.8 133 39.1
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 8.6e-13 77.4 131 39.7
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.1e-12 77.0 144 38.2
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.1e-12 77.0 133 40.6
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.5e-12 75.9 119 40.3
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.3e-12 75.5 130 40.0
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.3e-12 75.5 132 38.6
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 3.3e-12 75.5 67 58.2
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 3.3e-12 75.5 124 41.1
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.3e-12 75.1 130 39.2
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 7.3e-12 74.3 129 39.5
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 7.3e-12 74.3 66 56.1
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 9.5e-12 73.9 98 46.9
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.6e-11 73.2 128 40.6
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.8e-11 72.4 131 39.7
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 4.7e-11 71.6 125 40.8
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 8.1e-11 70.9 130 39.2
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 8.1e-11 70.9 130 40.0
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 8.1e-11 70.9 130 39.2
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 8.1e-11 70.9 130 39.2
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 8.1e-11 70.9 130 40.0
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 8.1e-11 70.9 138 37.7
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.4e-10 70.1 123 35.0
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 2.3e-10 69.3 126 36.5
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-10 68.9 129 39.5
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-10 68.9 132 40.2
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 3.1e-10 68.9 115 41.7
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.1e-10 68.9 128 37.5
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 4.0e-10 68.6 115 41.7
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 5.2e-10 68.2 130 38.5
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.5e-09 66.6 119 41.2
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 2.6e-09 65.9 126 36.5
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 3.4e-09 65.5 116 38.8
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 3.4e-09 65.5 126 36.5
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 4.4e-09 65.1 116 37.1
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 5.8e-09 64.7 124 38.7
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 5.8e-09 64.7 124 38.7
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 7.5e-09 64.3 114 41.2
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 9.9e-09 63.9 126 38.1
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.3e-08 63.5 126 38.9
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 1.7e-08 63.2 133 36.1
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.7e-08 63.2 51 60.8
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 3.7e-08 62.0 56 57.1
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.7e-08 62.0 124 39.5
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.9e-08 61.6 128 36.7
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 1.1e-07 60.5 128 37.5
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 1.4e-07 60.1 113 40.7
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-07 60.1 129 31.8
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 1.4e-07 60.1 129 31.8
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 1.4e-07 60.1 129 31.8
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.4e-07 60.1 126 38.9
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 1.4e-07 60.1 113 40.7
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 1.9e-07 59.7 113 38.9
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 3.2e-07 58.9 157 31.2
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 5.4e-07 58.2 126 35.7
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.4e-07 58.2 119 37.0
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.1e-07 57.8 129 34.1
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 7.1e-07 57.8 64 45.3
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 9.2e-07 57.4 123 38.2
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.2e-06 57.0 129 34.1
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.2e-06 57.0 115 38.3
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 4.6e-06 55.1 100 40.0
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 4.6e-06 55.1 75 48.0
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.6e-06 55.1 122 33.6
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.0e-06 54.7 60 45.0
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 7.8e-06 54.3 66 43.9
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 7.8e-06 54.3 124 33.1


User provided reference genes

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