Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G50700 Arabidopsis lyrata HOM05D003374 ORTHO05D009415 9.9e-73 276.6 128 100.0
AT2G17705 Arabidopsis thaliana HOM05D003374 ORTHO05D009415 2.4e-71 271.9 128 98.4
CARHR107990 Cardamine hirsuta HOM05D003374 ORTHO05D009415 7.1e-71 270.4 128 96.1
Carub.0003s3181 Capsella rubella HOM05D003374 ORTHO05D009415 3.9e-69 264.6 128 95.3
BcaC06g36302 Brassica carinata HOM05D003374 ORTHO05D009415 5.6e-68 260.8 128 89.8
Thhalv10023081m.g Eutrema salsugineum HOM05D003374 ORTHO05D009415 9.6e-68 260.0 128 92.2
Sp3g31110 Schrenkiella parvula HOM05D003374 ORTHO05D009415 1.3e-67 259.6 128 91.4
BcaB03g16543 Brassica carinata HOM05D003374 ORTHO05D009415 3.6e-67 258.1 127 89.0
C07p05590 Brassica napus HOM05D003374 ORTHO05D009415 3.6e-67 258.1 128 89.1
BraA07t28129Z Brassica rapa HOM05D003374 ORTHO05D009415 6.2e-67 257.3 128 89.1
THA.LOC104807515 Tarenaya hassleriana HOM05D003374 ORTHO05D009415 7.1e-63 243.8 128 85.2
BolC7t40958H Brassica oleracea HOM05D003374 ORTHO05D009415 1.1e-60 236.5 113 91.2
SalBow7G1184 Salvia bowleyana HOM05D003374 ORTHO05D009415 4.5e-57 224.6 125 81.6
A07p03300 Brassica napus HOM05D003374 ORTHO05D009415 1.7e-56 222.6 106 91.5
Aa31LG8G14980 Aethionema arabicum HOM05D003374 ORTHO05D009415 6.5e-56 220.7 108 88.9
TWI73G0214 Tripterygium wilfordii HOM05D003374 ORTHO05D009415 3.2e-55 218.4 127 76.4
SGA_v2.0_scaffold16G07586 Striga asiatica HOM05D003374 ORTHO05D009415 4.2e-55 218.0 125 77.6
Cpa.g.sc6.314 Carica papaya HOM05D003374 ORTHO05D009415 5.5e-55 217.6 128 77.3
Thecc.01G011400 Theobroma cacao HOM05D003374 ORTHO05D009415 5.5e-55 217.6 125 76.0
GSVIVG01005194001 Vitis vinifera HOM05D003374 ORTHO05D009415 5.5e-55 217.6 123 79.7
Lsat_1_v5_gn_2_75400 Lactuca sativa HOM05D003374 ORTHO05D009415 9.3e-55 216.9 125 74.4
CsaV3_3G000500 Cucumis sativus L. HOM05D003374 ORTHO05D009415 1.2e-54 216.5 125 74.4
COL.COLO4_22496 Corchorus olitorius HOM05D003374 ORTHO05D009415 3.5e-54 214.9 125 76.0
CiPaw.13G118300 Carya illinoinensis HOM05D003374 ORTHO05D009415 4.6e-54 214.5 125 76.0
Manes.01G150900 Manihot esculenta HOM05D003374 ORTHO05D009415 1.0e-53 213.4 125 75.2
Cfa007030 Carpinus fangiana HOM05D003374 ORTHO05D009415 1.8e-53 212.6 125 75.2
CiPaw.08G125700 Carya illinoinensis HOM05D003374 ORTHO05D009415 1.8e-53 212.6 125 75.2
Nn6g31909 Nelumbo nucifera HOM05D003374 ORTHO05D009415 1.8e-53 212.6 124 75.8
Duzib147G1310 Durio zibethinus HOM05D003374 ORTHO05D009415 3.0e-53 211.8 125 74.4
Migut.C00507 Erythranthe guttata HOM05D003374 ORTHO05D009415 3.0e-53 211.8 124 75.8
Rhsim10G0205600 Rhododendron simsii HOM05D003374 ORTHO05D009415 3.0e-53 211.8 125 73.6
Duzib147G0846 Durio zibethinus HOM05D003374 ORTHO05D009415 3.9e-53 211.5 125 74.4
Sabra05G0088200 Salix brachista HOM05D003374 ORTHO05D009415 3.9e-53 211.5 125 74.4
Eucgr.J02491 Eucalyptus grandis HOM05D003374 ORTHO05D009415 8.7e-53 210.3 125 73.6
Medtr5g022990 Medicago truncatula HOM05D003374 ORTHO05D009415 8.7e-53 210.3 125 71.2
Psat2g152000 Pisum sativum HOM05D003374 ORTHO05D009415 8.7e-53 210.3 122 73.8
TPR.G25106 Trifolium pratense HOM05D003374 ORTHO05D009415 8.7e-53 210.3 122 73.0
DCAR_014045 Daucus carota HOM05D003374 ORTHO05D009415 2.5e-52 208.8 125 72.8
Aqoxy6G01987 Aquilegia oxysepala HOM05D003374 ORTHO05D009415 5.7e-52 207.6 125 71.2
Lalb_Chr05g0212171 Lupinus albus HOM05D003374 ORTHO05D009415 5.7e-52 207.6 122 74.6
Oeu022072.1 Olea europaea HOM05D003374 ORTHO05D009415 5.7e-52 207.6 125 71.2
Potri.005G107700 Populus trichocarpa HOM05D003374 ORTHO05D009415 9.6e-52 206.8 125 72.8
RcHm_v2.0_Chr2g0098341 Rosa chinensis HOM05D003374 ORTHO05D009415 1.3e-51 206.5 124 74.2
ATR0661G346 Amborella trichopoda HOM05D003374 ORTHO05D009415 1.6e-51 206.1 123 74.0
Ca_24943_v3 Cicer arietinum L. HOM05D003374 ORTHO05D009415 2.1e-51 205.7 122 72.1
Glyma.11G081000 Glycine max HOM05D003374 ORTHO05D009415 2.1e-51 205.7 122 71.3
TAR376G1073 Trochodendron aralioides HOM05D003374 ORTHO05D009415 2.1e-51 205.7 125 73.6
Oeu050858.1 Olea europaea HOM05D003374 ORTHO05D009415 3.7e-51 204.9 125 70.4
MD02G1123500 Malus domestica HOM05D003374 ORTHO05D009415 4.8e-51 204.5 125 73.6
Haze_03703 Corylus avellana HOM05D003374 ORTHO05D009415 6.2e-51 204.1 124 71.8
Lj2g0014685 Lotus japonicus HOM05D003374 ORTHO05D009415 6.2e-51 204.1 124 73.4
Gorai.003G005800 Gossypium raimondii HOM05D003374 ORTHO05D009415 8.2e-51 203.8 125 72.8
TAR625G1333 Trochodendron aralioides HOM05D003374 ORTHO05D009415 8.2e-51 203.8 122 73.8
Gohir.A02G174400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 1.1e-50 203.4 125 72.0
FvH4_1g11071 Fragaria vesca HOM05D003374 ORTHO05D009415 1.4e-50 203.0 125 71.2
Phvul.002G104600 Phaseolus vulgaris HOM05D003374 ORTHO05D009415 1.8e-50 202.6 120 75.0
Cc07_g11320 Coffea canephora HOM05D003374 ORTHO05D009415 3.1e-50 201.8 125 69.6
Cc08_g04870 Coffea canephora HOM05D003374 ORTHO05D009415 3.1e-50 201.8 125 69.6
Sopen02g028140 Solanum pennellii HOM05D003374 ORTHO05D009415 3.1e-50 201.8 125 69.6
QL06p052083 Quercus lobata HOM05D003374 ORTHO05D009415 4.1e-50 201.4 122 71.3
Solyc02g083360.1 Solanum lycopersicum HOM05D003374 ORTHO05D009415 4.1e-50 201.4 125 69.6
PGSC0003DMG400003664 Solanum tuberosum HOM05D003374 ORTHO05D009415 5.3e-50 201.1 125 69.6
CAN.G890.27 Capsicum annuum HOM05D003374 ORTHO05D009415 9.0e-50 200.3 125 68.8
Gohir.D03G005400 Gossypium hirsutum HOM05D003374 ORTHO05D009415 9.0e-50 200.3 125 71.2
Sc16g0001810 Simmondsia chinensis HOM05D003374 ORTHO05D009415 9.0e-50 200.3 125 70.4
CSS0011665 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 1.5e-49 199.5 125 70.4
CANSAT25G2243 Cannabis sativa HOM05D003374 ORTHO05D009415 2.6e-49 198.7 125 70.4
HPP92_015019 Vanilla planifolia HOM05D003374 ORTHO05D009415 2.6e-49 198.7 122 70.5
HPP92_028513 Vanilla planifolia HOM05D003374 ORTHO05D009415 2.6e-49 198.7 122 70.5
Atru.chr3.908 Acer truncatum HOM05D003374 ORTHO05D009415 4.5e-49 198.0 125 68.8
Ah.03g134290 Amaranthus hybridus HOM05D003374 ORTHO05D009415 4.5e-49 198.0 125 69.6
Ciclev10026501m.g Citrus clementina HOM05D003374 ORTHO05D009415 4.5e-49 198.0 125 70.4
Prupe.7G175100 Prunus persica HOM05D003374 ORTHO05D009415 5.8e-49 197.6 122 73.0
unitig_26.g9807 Utricularia gibba HOM05D003374 ORTHO05D009415 1.0e-48 196.8 121 71.1
PSO541G5712 Papaver somniferum HOM05D003374 ORTHO05D009415 1.3e-48 196.4 125 67.2
Dinv40145 Davidia involucrata HOM05D003374 ORTHO05D009415 3.8e-48 194.9 111 75.7
CSS0020449 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 6.5e-48 194.1 125 68.8
CSS0026426 Camellia sinensis var. sinensis HOM05D003374 ORTHO05D009415 8.4e-48 193.7 110 76.4
MBI05_g46750_MAGBIO Magnolia biondii HOM05D003374 ORTHO05D009415 8.4e-48 193.7 108 78.7
SEGI_17874 Sequoiadendron giganteum HOM05D003374 ORTHO05D009415 4.2e-47 191.4 122 68.9
HanXRQChr14g0442031 Helianthus annuus HOM05D003374 ORTHO05D009415 7.1e-47 190.7 116 69.8
PSO675G5709 Papaver somniferum HOM05D003374 ORTHO05D009415 7.1e-47 190.7 125 64.8
Os03g0136500 Oryza sativa ssp. japonica HOM05D003374 ORTHO05D009415 3.0e-45 185.3 122 67.2
MSTRG.25049 Avicennia marina HOM05D003374 ORTHO05D009415 1.1e-44 183.3 109 71.6
MD15G1237300 Malus domestica HOM05D003374 ORTHO05D009415 1.5e-44 183.0 143 61.5
Zm00001eb002870 Zea mays HOM05D003374 ORTHO05D009415 1.9e-44 182.6 120 65.8
Actinidia22936 Actinidia chinensis HOM05D003374 ORTHO05D009415 4.3e-44 181.4 103 76.7
Nitab4.5_0002105g0060 Nicotiana tabacum HOM05D003374 ORTHO05D009415 6.9e-42 174.1 103 69.9
MELO3C013742.2 Cucumis melo HOM05D003374 ORTHO05D009415 2.0e-41 172.6 97 74.2
Nitab4.5_0006892g0030 Nicotiana tabacum HOM05D003374 ORTHO05D009415 5.9e-41 171.0 103 69.9
AagrBONN_evm.TU.Sc2ySwM_362.2709 Anthoceros agrestis HOM05D003374 ORTHO05D009415 1.6e-38 162.9 121 60.3
SMO013G0010 Selaginella moellendorffii HOM05D003374 ORTHO05D009415 1.6e-38 162.9 121 58.7
Pp3c17_11570 Physcomitrium patens HOM05D003374 ORTHO05D009415 8.8e-37 157.1 122 57.4
Sed0013270 Sechium edule HOM05D003374 ORTHO05D009415 8.8e-37 157.1 97 67.0
AagrBONN_evm.TU.Sc2ySwM_362.2707 Anthoceros agrestis HOM05D003374 ORTHO05D009415 2.0e-36 156.0 121 58.7
Pp3c1_28090 Physcomitrium patens HOM05D003374 ORTHO05D009415 1.4e-34 149.8 122 56.6
Pp3c2_13370 Physcomitrium patens HOM05D003374 ORTHO05D009415 5.9e-33 144.4 122 53.3
Sc16g0001870 Simmondsia chinensis HOM05D003374 ORTHO05D009415 7.7e-33 144.1 88 71.6
Mapoly0037s0042 Marchantia polymorpha HOM05D003374 ORTHO05D009415 3.8e-32 141.7 122 51.6
Glyma.01G162300 Glycine max HOM05D003374 ORTHO05D009415 2.6e-28 129.0 75 72.0
CBR_g80133 Chara braunii HOM05D003374 ORTHO05D009415 1.4e-21 106.7 112 43.8
Actinidia17404 Actinidia chinensis HOM05D003374 ORTHO05D009415 8.8e-13 77.4 99 40.4
Peaxi162Scf00079g00248 Petunia axillaris HOM05D003340 ORTHO05D003775 5.7e-12 74.7 124 34.7
SGA_v2.0_scaffold52G18966 Striga asiatica HOM05D003340 ORTHO05D003775 1.7e-11 73.2 128 33.6
Lsat_1_v5_gn_1_10021 Lactuca sativa HOM05D003340 ORTHO05D003775 2.2e-11 72.8 126 34.1
MSTRG.25383 Avicennia marina HOM05D003340 ORTHO05D003775 2.8e-11 72.4 125 34.4
Oeu017298.1 Olea europaea HOM05D003340 ORTHO05D003775 4.1e-10 68.6 125 31.2
Sabra05G0057400 Salix brachista HOM05D003340 ORTHO05D003775 5.4e-10 68.2 85 36.5
Aqoxy6G00217 Aquilegia oxysepala HOM05D003340 ORTHO05D003775 9.1e-10 67.4 126 31.0
Eucgr.F04352 Eucalyptus grandis HOM05D003340 ORTHO05D003775 9.1e-10 67.4 127 33.1
Nn1g08798 Nelumbo nucifera HOM05D003340 ORTHO05D003775 9.1e-10 67.4 88 34.1
VMungo1309G0419 Vigna mungo HOM05D003340 ORTHO05D003775 9.1e-10 67.4 126 31.7
SalBow7G3799 Salvia bowleyana HOM05D003340 ORTHO05D003775 1.2e-09 67.0 86 38.4
AUR62014338 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.6e-09 66.6 87 35.6
AUR62019080 Chenopodium quinoa HOM05D003340 ORTHO05D003775 1.6e-09 66.6 87 35.6
AUR62006909 Chenopodium quinoa HOM05D003340 ORTHO05D003775 2.0e-09 66.2 83 33.7
Manes.02G163400 Manihot esculenta HOM05D003340 ORTHO05D003775 2.0e-09 66.2 123 30.1
Potri.005G070600 Populus trichocarpa HOM05D003340 ORTHO05D003775 2.0e-09 66.2 87 33.3
Hund17293 Selenicereus undatus HOM05D003340 ORTHO05D003775 2.0e-09 66.2 107 34.6
A02p26860 Brassica napus HOM05D003340 ORTHO05D003775 3.5e-09 65.5 124 30.6
BraA02t07697Z Brassica rapa HOM05D003340 ORTHO05D003775 3.5e-09 65.5 124 30.6
SMO119G0032 Selaginella moellendorffii HOM05D003340 ORTHO05D003775 3.5e-09 65.5 84 35.7
Hund26810 Selenicereus undatus HOM05D003340 ORTHO05D003775 3.5e-09 65.5 87 36.8
BolSC33t60637H Brassica oleracea HOM05D003340 ORTHO05D003775 4.5e-09 65.1 124 30.6
CANSAT25G3576 Cannabis sativa HOM05D003340 ORTHO05D003775 5.9e-09 64.7 123 30.9
Manes.18G077306 Manihot esculenta HOM05D003340 ORTHO05D003775 7.7e-09 64.3 123 30.9
Psat5g087400 Pisum sativum HOM05D003340 ORTHO05D003775 1.0e-08 63.9 126 31.7
QL09p034593 Quercus lobata HOM05D003340 ORTHO05D003775 1.0e-08 63.9 126 31.0
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.3e-08 63.5 124 31.5
EL10Ac1g01010 Beta vulgaris HOM05D003340 ORTHO05D003775 1.3e-08 63.5 87 33.3
Medtr3g088030 Medicago truncatula HOM05D003340 ORTHO05D003775 1.3e-08 63.5 128 32.0
Dinv07260 Davidia involucrata HOM05D003340 ORTHO05D003775 1.7e-08 63.2 90 33.3
HPP92_019003 Vanilla planifolia HOM05D003340 ORTHO05D003775 1.7e-08 63.2 90 35.6
Glyma.13G079000 Glycine max HOM05D003340 ORTHO05D003775 2.2e-08 62.8 127 30.7
Rhsim06G0103500 Rhododendron simsii HOM05D003340 ORTHO05D003775 2.2e-08 62.8 125 32.0
PSO170G4666 Papaver somniferum HOM05D003340 ORTHO05D003775 2.9e-08 62.4 126 28.6
Psat6g041160 Pisum sativum HOM05D003340 ORTHO05D003775 2.9e-08 62.4 126 31.0
TAR381G1109 Trochodendron aralioides HOM05D003340 ORTHO05D003775 2.9e-08 62.4 126 28.6
MBI11_g05791_MAGBIO Magnolia biondii HOM05D003340 ORTHO05D003775 3.8e-08 62.0 124 31.5
Mapoly0166s0008 Marchantia polymorpha HOM05D003340 ORTHO05D003775 3.8e-08 62.0 121 29.8
THA.LOC104806822 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 3.8e-08 62.0 127 30.7
AagrBONN_evm.TU.Sc2ySwM_362.2682 Anthoceros agrestis HOM05D003340 ORTHO05D003775 6.5e-08 61.2 86 31.4
CSS0003781 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 6.5e-08 61.2 124 30.6
CSS0046765 Camellia sinensis var. sinensis HOM05D003340 ORTHO05D003775 6.5e-08 61.2 124 30.6
Dinv07220 Davidia involucrata HOM05D003340 ORTHO05D003775 6.5e-08 61.2 86 33.7
THA.LOC104817332 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 6.5e-08 61.2 124 29.8
Thecc.08G125400 Theobroma cacao HOM05D003340 ORTHO05D003775 6.5e-08 61.2 87 35.6
TAR636G0511 Trochodendron aralioides HOM05D003340 ORTHO05D003775 6.5e-08 61.2 124 29.0
Carub.0006s2689 Capsella rubella HOM05D003340 ORTHO05D003775 8.5e-08 60.8 117 29.9
Thhalv10029030m.g Eutrema salsugineum HOM05D003340 ORTHO05D003775 8.5e-08 60.8 123 27.6
BcaC03g16448 Brassica carinata HOM05D003340 ORTHO05D003775 1.1e-07 60.5 124 29.8
C02p42680 Brassica napus HOM05D003340 ORTHO05D003775 1.1e-07 60.5 124 29.8
Zm00001eb289950 Zea mays HOM05D003340 ORTHO05D003775 1.1e-07 60.5 124 31.5
Migut.N00692 Erythranthe guttata HOM05D003340 ORTHO05D003775 1.5e-07 60.1 93 34.4
Gohir.A05G268800 Gossypium hirsutum HOM05D003340 ORTHO05D003775 1.5e-07 60.1 87 35.6
Os01g0833400 Oryza sativa ssp. japonica HOM05D003340 ORTHO05D003775 1.5e-07 60.1 95 30.5
Hund21783 Selenicereus undatus HOM05D003340 ORTHO05D003775 1.5e-07 60.1 132 26.5
Lalb_Chr10g0101671 Lupinus albus HOM05D003340 ORTHO05D003775 1.9e-07 59.7 124 30.6
Ah.06g188530 Amaranthus hybridus HOM05D003340 ORTHO05D003775 2.5e-07 59.3 83 32.5
EL10Ac4g09660 Beta vulgaris HOM05D003340 ORTHO05D003775 2.5e-07 59.3 133 27.8
Glyma.06G113100 Glycine max HOM05D003340 ORTHO05D003775 2.5e-07 59.3 87 35.6
Glyma.14G150300 Glycine max HOM05D003340 ORTHO05D003775 2.5e-07 59.3 127 29.9
Hma1.2p1_0619F.1_g190390 Hydrangea macrophylla HOM05D003340 ORTHO05D003775 2.5e-07 59.3 128 30.5
Aa31LG9G14230 Aethionema arabicum HOM05D003340 ORTHO05D003775 3.2e-07 58.9 123 27.6
Gohir.D05G270700 Gossypium hirsutum HOM05D003340 ORTHO05D003775 3.2e-07 58.9 87 34.5
Gorai.009G283300 Gossypium raimondii HOM05D003340 ORTHO05D003775 3.2e-07 58.9 87 34.5
GSVIVG01022376001 Vitis vinifera HOM05D003340 ORTHO05D003775 3.2e-07 58.9 84 33.3
Lj4P627T24 Lonicera japonica HOM05D003340 ORTHO05D003775 7.2e-07 57.8 96 34.4
PGR044G1945 Punica granatum HOM05D003340 ORTHO05D003775 7.2e-07 57.8 86 34.9
TWI74G0103 Tripterygium wilfordii HOM05D003340 ORTHO05D003775 7.2e-07 57.8 123 27.6
Haze_00442 Corylus avellana HOM05D003340 ORTHO05D003775 9.4e-07 57.4 127 29.9
PGR102G2107 Punica granatum HOM05D003340 ORTHO05D003775 9.4e-07 57.4 88 29.5
SGA_v2.0_scaffold120G33021 Striga asiatica HOM05D003340 ORTHO05D003775 9.4e-07 57.4 93 35.5
Lj1g0013118 Lotus japonicus HOM05D003340 ORTHO05D003775 1.2e-06 57.0 130 26.9
Lalb_Chr11g0065901 Lupinus albus HOM05D003340 ORTHO05D003775 1.6e-06 56.6 123 29.3
Hma1.2p1_0161F.1_g071770 Hydrangea macrophylla HOM05D003340 ORTHO05D003775 2.1e-06 56.2 93 33.3
Potri.005G178000 Populus trichocarpa HOM05D003340 ORTHO05D003775 2.1e-06 56.2 126 33.3
ClCG11G015750 Citrullus lanatus HOM05D003340 ORTHO05D003775 2.7e-06 55.8 126 31.0
Ciclev10002808m.g Citrus clementina HOM05D003340 ORTHO05D003775 2.7e-06 55.8 125 32.0
VMungo0647G0885 Vigna mungo HOM05D000654 ORTHO05D002330 2.7e-06 55.8 124 29.8
Medtr1g030060 Medicago truncatula HOM05D003340 ORTHO05D003775 3.6e-06 55.5 126 29.4
PSO528G0096 Papaver somniferum HOM05D003340 ORTHO05D003775 3.6e-06 55.5 130 28.5
THA.LOC104808821 Tarenaya hassleriana HOM05D003340 ORTHO05D003775 4.7e-06 55.1 91 36.3
Zm00001eb368310 Zea mays HOM05D003340 ORTHO05D003775 6.1e-06 54.7 85 31.8
HPP92_013888 Vanilla planifolia HOM05D003340 ORTHO05D003775 8.0e-06 54.3 87 31.0


User provided reference genes

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