Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 4.3e-118 427.9 206 100.0
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 3.4e-115 418.3 206 96.1
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 8.4e-114 413.7 206 95.1
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 5.2e-108 394.4 205 90.2
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 3.4e-107 391.7 205 87.3
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 4.4e-107 391.3 205 87.3
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 4.4e-107 391.3 205 89.8
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 9.9e-107 390.2 205 86.8
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 2.9e-106 388.7 205 87.3
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 2.9e-106 388.7 205 87.3
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 1.9e-105 386.0 205 86.8
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 1.2e-96 356.7 206 79.6
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 7.4e-86 320.9 184 79.9
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 8.2e-85 317.4 204 69.6
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 1.1e-84 317.0 205 68.8
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 1.1e-84 317.0 204 69.6
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 2.4e-84 315.8 204 69.6
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 1.5e-83 313.2 204 68.6
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 2.0e-83 312.8 205 67.8
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 7.6e-83 310.8 205 66.8
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 1.3e-82 310.1 206 68.0
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 1.7e-82 309.7 207 67.6
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 4.9e-82 308.1 206 66.5
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 8.4e-82 307.4 204 67.2
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 1.9e-81 306.2 208 67.3
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 1.2e-80 303.5 204 64.7
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 1.6e-80 303.1 205 65.4
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 2.1e-80 302.8 205 63.9
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 2.1e-80 302.8 202 65.3
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 2.7e-80 302.4 202 66.8
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 4.6e-80 301.6 205 63.9
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 7.9e-80 300.8 204 65.7
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 7.9e-80 300.8 204 65.7
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 1.3e-79 300.1 205 62.9
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 1.3e-79 300.1 202 64.9
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 3.0e-79 298.9 202 64.9
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.9e-79 298.5 204 63.7
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 3.9e-79 298.5 205 62.9
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 6.7e-79 297.7 204 65.7
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 8.7e-79 297.4 204 63.2
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 1.1e-78 297.0 202 65.3
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.5e-78 296.6 204 63.2
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 1.5e-78 296.6 205 62.9
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 2.5e-78 295.8 206 65.0
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 2.5e-78 295.8 204 63.7
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.3e-78 295.4 204 62.7
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 3.3e-78 295.4 204 66.7
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 7.4e-78 294.3 205 62.4
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 7.4e-78 294.3 204 66.7
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 7.4e-78 294.3 204 66.7
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 2.8e-77 292.4 204 62.7
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 2.8e-77 292.4 204 62.7
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 6.3e-77 291.2 196 64.8
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 2.4e-76 289.3 204 63.7
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 4.1e-76 288.5 205 62.9
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 9.0e-76 287.3 202 62.9
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 2.0e-75 286.2 202 61.4
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 2.6e-75 285.8 198 63.1
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 2.6e-75 285.8 206 60.7
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 3.4e-75 285.4 206 60.7
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 4.5e-75 285.0 205 61.5
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 1.0e-74 283.9 203 62.6
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 1.3e-74 283.5 206 61.7
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 1.7e-74 283.1 206 61.7
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 1.7e-74 283.1 206 61.7
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 6.5e-74 281.2 204 60.8
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 1.4e-73 280.0 204 60.8
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 4.2e-73 278.5 202 59.9
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 7.2e-73 277.7 206 60.7
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 7.2e-73 277.7 204 59.3
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 2.1e-72 276.2 207 60.9
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 2.7e-72 275.8 148 86.5
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 1.8e-71 273.1 185 64.9
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 8.7e-71 270.8 202 60.9
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 1.5e-70 270.0 202 59.9
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 1.5e-70 270.0 184 64.1
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 5.7e-70 268.1 205 59.0
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 1.3e-69 266.9 205 59.0
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 4.1e-68 261.9 204 57.8
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 5.9e-67 258.1 211 56.4
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 7.7e-67 257.7 174 67.8
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 6.5e-66 254.6 185 60.5
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 1.6e-64 250.0 164 65.9
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 1.6e-64 250.0 203 54.7
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 3.0e-63 245.7 165 64.2
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 5.1e-63 245.0 120 93.3
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 4.8e-61 238.4 207 52.7
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 2.4e-60 236.1 161 64.0
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 2.2e-58 229.6 212 51.9
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 2.2e-58 229.6 212 51.9
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 5.0e-58 228.4 165 59.4
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 5.5e-57 224.9 187 54.0
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 1.0e-55 220.7 147 61.9
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 2.3e-55 219.5 214 49.1
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 1.5e-54 216.9 210 48.1
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 5.7e-54 214.9 161 56.5
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 7.4e-54 214.5 145 61.4
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 3.7e-53 212.2 146 64.4
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 2.7e-48 196.1 213 44.1
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.4e-47 193.7 124 67.7
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 2.2e-45 186.4 148 56.1
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 6.3e-45 184.9 168 51.2
SMO364G0252 Selaginella moellendorffii HOM05D007035 ORTHO05D008774 8.0e-40 167.9 160 48.1
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 8.3e-37 157.9 145 53.1
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 2.9e-34 149.4 106 57.5
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 1.1e-33 147.5 106 56.6
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 2.1e-32 143.3 156 42.9
PRCOL_00002518 Prasinoderma coloniale HOM05D007035 ORTHO05D008774 2.1e-32 143.3 247 36.0
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 4.9e-29 132.1 168 37.5
Cre17.g720550 Chlamydomonas reinhardtii HOM05D007035 ORTHO05D008774 1.6e-24 117.1 213 31.0
CBR_g48433 Chara braunii HOM05D007035 ORTHO05D008774 6.8e-23 111.7 277 24.2
MCO10G322 Micromonas commoda HOM05D007035 ORTHO05D008774 2.6e-22 109.8 147 37.4
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 4.9e-21 105.5 107 46.7
Cpa.g.sc6.336 Carica papaya HOM05D007035 ORTHO05D008774 2.8e-16 89.7 59 69.5
Peaxi162Scf00300g00119 Petunia axillaris HOM05D007035 ORTHO05D008774 3.7e-13 79.3 61 60.7
RcHm_v2.0_Chr5g0036471 Rosa chinensis HOM05D007035 ORTHO05D008774 1.9e-12 77.0 56 55.4


User provided reference genes

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