Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G50190 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 5.8e-155 550.8 272 100.0
AT2G17305 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 1.3e-146 523.1 272 94.1
Carub.0003s2703 Capsella rubella HOM05D003087 ORTHO05D003312 9.0e-116 420.6 274 77.7
Thhalv10027438m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 2.0e-94 349.7 260 65.4
Sp7g31920 Schrenkiella parvula HOM05D003087 ORTHO05D003312 2.8e-93 345.9 271 62.4
Carub.0003s3127 Capsella rubella HOM05D003087 ORTHO05D003312 5.9e-91 338.2 279 62.4
A03p62650 Brassica napus HOM05D003087 ORTHO05D003312 9.7e-86 320.9 271 56.1
C07p60200 Brassica napus HOM05D003087 ORTHO05D003312 3.7e-85 318.9 271 56.1
BolC7t46461H Brassica oleracea HOM05D003087 ORTHO05D003312 3.7e-85 318.9 271 56.1
BraA03t15334Z Brassica rapa HOM05D003087 ORTHO05D003312 5.3e-84 315.1 271 55.0
BcaNung03799 Brassica carinata HOM05D003087 ORTHO05D003312 9.4e-81 304.3 269 57.6
C01p04660 Brassica napus HOM05D003087 ORTHO05D003312 2.1e-80 303.1 269 57.2
BolC1t00449H Brassica oleracea HOM05D003087 ORTHO05D003312 2.1e-80 303.1 269 57.2
BcaNung03364 Brassica carinata HOM05D003087 ORTHO05D003312 1.8e-79 300.1 271 54.2
A01p04270 Brassica napus HOM05D003087 ORTHO05D003312 1.3e-77 293.9 270 57.0
BraA01t00416Z Brassica rapa HOM05D003087 ORTHO05D003312 1.3e-77 293.9 270 57.0
Sp4g03660 Schrenkiella parvula HOM05D003087 ORTHO05D003312 8.9e-55 218.0 267 44.2
Carub.0004s0417 Capsella rubella HOM05D003087 ORTHO05D003312 1.9e-44 183.7 392 32.9
Aa31LG3G10740 Aethionema arabicum HOM05D003087 ORTHO05D003312 6.0e-43 178.7 182 48.4
CARHR117950 Cardamine hirsuta HOM05D003087 ORTHO05D003312 8.1e-40 168.3 392 30.1
BcaB02g08119 Brassica carinata HOM05D003087 ORTHO05D003312 4.0e-39 166.0 395 30.6
C04p30780 Brassica napus HOM05D003087 ORTHO05D003312 2.0e-38 163.7 393 30.0
BolC4t24597H Brassica oleracea HOM05D003087 ORTHO05D003312 2.0e-38 163.7 393 30.0
BcaC02g10284 Brassica carinata HOM05D003087 ORTHO05D003312 1.3e-37 161.0 393 29.8
Thhalv10015307m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.6e-35 154.1 404 29.2
Thhalv10015855m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.6e-35 154.1 402 29.9
Sp4g04050 Schrenkiella parvula HOM05D003087 ORTHO05D003312 1.6e-35 154.1 270 37.0
Sp5g01160 Schrenkiella parvula HOM05D003087 ORTHO05D003312 1.6e-35 154.1 395 29.6
Thhalv10003202m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 4.6e-35 152.5 356 30.6
BraA04t15788Z Brassica rapa HOM05D003087 ORTHO05D003312 3.9e-34 149.4 387 29.7
A04p00690 Brassica napus HOM05D003087 ORTHO05D003312 8.6e-34 148.3 387 29.7
AT5G54820 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 1.1e-33 147.9 243 35.0
AL1G66030 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 1.9e-33 147.1 409 27.6
Sp6g16760 Schrenkiella parvula HOM05D003087 ORTHO05D003312 1.9e-33 147.1 240 37.5
THA.LOC104812534 Tarenaya hassleriana HOM05D003087 ORTHO05D003312 2.5e-33 146.7 385 28.8
AL5G44970 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 4.3e-33 146.0 394 28.7
Sp6g16780 Schrenkiella parvula HOM05D003087 ORTHO05D003312 2.1e-32 143.7 346 31.2
Atru.chr2.3270 Acer truncatum HOM05D003087 ORTHO05D003312 3.6e-32 142.9 186 40.9
AL8G30250 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 6.2e-32 142.1 406 27.3
AT3G62230 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 1.4e-31 141.0 186 41.4
BcaC03g14738 Brassica carinata HOM05D003087 ORTHO05D003312 3.1e-31 139.8 404 28.5
C02p21890 Brassica napus HOM05D003087 ORTHO05D003312 3.1e-31 139.8 404 28.5
BolC2t08321H Brassica oleracea HOM05D003087 ORTHO05D003312 3.1e-31 139.8 404 28.5
Thhalv10015513m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 6.9e-31 138.7 382 27.5
BcaB03g16176 Brassica carinata HOM05D003087 ORTHO05D003312 1.2e-30 137.9 396 28.8
AL8G30260 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 7.6e-30 135.2 244 33.6
Sp6g13720 Schrenkiella parvula HOM05D003087 ORTHO05D003312 7.6e-30 135.2 250 35.2
Thhalv10005956m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 9.9e-30 134.8 186 39.2
A02p13580 Brassica napus HOM05D003087 ORTHO05D003312 2.2e-29 133.7 184 40.8
BraA02t06416Z Brassica rapa HOM05D003087 ORTHO05D003312 2.2e-29 133.7 184 40.8
Carub.0005s2895 Capsella rubella HOM05D003087 ORTHO05D003312 3.8e-29 132.9 395 28.1
Sp6g16770 Schrenkiella parvula HOM05D003087 ORTHO05D003312 6.4e-29 132.1 237 35.0
A06p35460 Brassica napus HOM05D003087 ORTHO05D003312 8.4e-29 131.7 184 41.8
BraA06t26469Z Brassica rapa HOM05D003087 ORTHO05D003312 8.4e-29 131.7 184 41.8
CARHR265840 Cardamine hirsuta HOM05D003087 ORTHO05D003312 8.4e-29 131.7 275 31.3
BcaC01g06328 Brassica carinata HOM05D003087 ORTHO05D003312 1.4e-28 131.0 184 40.2
C03p16770 Brassica napus HOM05D003087 ORTHO05D003312 1.4e-28 131.0 184 40.2
Thhalv10015702m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.4e-28 131.0 246 34.1
Thhalv10015804m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 1.9e-28 130.6 315 31.1
AT1G56400 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 3.2e-28 129.8 244 32.4
A07p32700 Brassica napus HOM05D003087 ORTHO05D003312 3.2e-28 129.8 184 40.8
BraA07t30896Z Brassica rapa HOM05D003087 ORTHO05D003312 3.2e-28 129.8 184 40.8
BolC3t14097H Brassica oleracea HOM05D003087 ORTHO05D003312 4.2e-28 129.4 184 39.7
AT3G29830 Arabidopsis thaliana HOM05D003087 ORTHO05D003312 5.4e-28 129.0 405 27.9
A03p14390 Brassica napus HOM05D003087 ORTHO05D003312 9.3e-28 128.3 184 39.7
BraA03t10736Z Brassica rapa HOM05D003087 ORTHO05D003312 9.3e-28 128.3 184 39.7
TWI38G0929 Tripterygium wilfordii HOM05D003087 ORTHO05D003312 1.2e-27 127.9 394 26.9
Carub.0005s0836 Capsella rubella HOM05D003087 ORTHO05D003312 2.7e-27 126.7 393 27.0
Sabra11G0122300 Salix brachista HOM05D003087 ORTHO05D003312 1.0e-26 124.8 177 39.0
Carub.0004s0399 Capsella rubella HOM05D003087 ORTHO05D003312 1.7e-26 124.0 256 31.2
BcaB01g04327 Brassica carinata HOM05D003087 ORTHO05D003312 3.0e-26 123.2 168 39.9
BolC6t38982H Brassica oleracea HOM05D003087 ORTHO05D003312 3.0e-26 123.2 184 40.2
BcaC07g40126 Brassica carinata HOM05D003087 ORTHO05D003312 5.1e-26 122.5 168 39.9
C06p38890 Brassica napus HOM05D003087 ORTHO05D003312 8.7e-26 121.7 184 39.1
Sp6g13710 Schrenkiella parvula HOM05D003087 ORTHO05D003312 8.7e-26 121.7 267 33.7
Manes.03G091200 Manihot esculenta HOM05D003087 ORTHO05D003312 7.3e-25 118.6 176 37.5
Carub.0004s0398 Capsella rubella HOM05D003087 ORTHO05D003312 9.6e-25 118.2 266 30.8
Thhalv10015433m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 9.6e-25 118.2 163 39.3
BcaB08g35406 Brassica carinata HOM05D003087 ORTHO05D003312 2.1e-24 117.1 348 28.7
Carub.0008s1509 Capsella rubella HOM05D003087 ORTHO05D003312 2.1e-24 117.1 372 27.4
Potri.001G420500 Populus trichocarpa HOM05D003087 ORTHO05D003312 2.8e-24 116.7 175 36.6
BcaB01g04331 Brassica carinata HOM05D003087 ORTHO05D003312 3.6e-24 116.3 169 39.1
Manes.03G091400 Manihot esculenta HOM05D003087 ORTHO05D003312 3.6e-24 116.3 170 38.2
BcaB03g16179 Brassica carinata HOM05D003087 ORTHO05D003312 6.2e-24 115.5 188 37.8
Sabra16G0285500 Salix brachista HOM05D003087 ORTHO05D003312 8.1e-24 115.2 176 36.4
QL08p012174 Quercus lobata HOM05D003087 ORTHO05D003312 2.4e-23 113.6 183 38.3
Potri.011G136200 Populus trichocarpa HOM05D003087 ORTHO05D003312 3.1e-23 113.2 176 36.4
Atru.chr2.3272 Acer truncatum HOM05D003087 ORTHO05D003312 4.0e-23 112.8 206 36.4
QL08p011993 Quercus lobata HOM05D003087 ORTHO05D003312 4.0e-23 112.8 183 38.8
Manes.15G074400 Manihot esculenta HOM05D003087 ORTHO05D003312 5.3e-23 112.5 175 33.7
Sp4g05500 Schrenkiella parvula HOM05D003087 ORTHO05D003312 9.0e-23 111.7 144 42.4
Prupe.4G208300 Prunus persica HOM05D003087 ORTHO05D003312 1.5e-22 110.9 186 33.9
CiPaw.11G186600 Carya illinoinensis HOM05D003087 ORTHO05D003312 2.0e-22 110.5 178 34.8
Oeu020132.1 Olea europaea HOM05D003087 ORTHO05D003312 7.6e-22 108.6 193 34.7
Psat6g174360 Pisum sativum HOM05D003087 ORTHO05D003312 4.9e-21 105.9 238 27.3
Manes.03G127400 Manihot esculenta HOM05D003087 ORTHO05D003312 6.4e-21 105.5 202 28.2
Cpa.g.sc97.41 Carica papaya HOM05D003087 ORTHO05D003312 8.4e-21 105.1 178 33.1
Glyma.14G025750 Glycine max HOM05D003087 ORTHO05D003312 8.4e-21 105.1 178 35.4
BolC2t08323H Brassica oleracea HOM05D003087 ORTHO05D003312 3.2e-20 103.2 145 37.2
C02p21910 Brassica napus HOM05D003087 ORTHO05D003312 4.2e-20 102.8 145 37.2
Duzib268G1323 Durio zibethinus HOM05D003087 ORTHO05D003312 4.2e-20 102.8 176 33.5
Prupe.4G208200 Prunus persica HOM05D003087 ORTHO05D003312 7.1e-20 102.1 178 33.1
Actinidia05111 Actinidia chinensis HOM05D003087 ORTHO05D003312 9.3e-20 101.7 256 28.5
Rhsim06G0214600 Rhododendron simsii HOM05D003087 ORTHO05D003312 9.3e-20 101.7 185 34.6
TAR629G2777 Trochodendron aralioides HOM05D003087 ORTHO05D003312 9.3e-20 101.7 164 35.4
MD11G1223200 Malus domestica HOM05D003087 ORTHO05D003312 1.6e-19 100.9 167 31.1
Lj5g0022613 Lotus japonicus HOM05D003087 ORTHO05D003312 3.5e-19 99.8 180 33.9
Lalb_Chr02g0152671 Lupinus albus HOM05D003087 ORTHO05D003312 4.6e-19 99.4 136 42.6
Atru.chr2.3271 Acer truncatum HOM05D003087 ORTHO05D003312 7.9e-19 98.6 162 37.7
Medtr3g448340 Medicago truncatula HOM05D003087 ORTHO05D003312 1.3e-18 97.8 238 31.9
QL08p012142 Quercus lobata HOM05D003087 ORTHO05D003312 1.8e-18 97.4 190 33.7
Glyma.02G289100 Glycine max HOM05D003087 ORTHO05D003312 3.0e-18 96.7 144 36.8
AL5G20200 Arabidopsis lyrata HOM05D003087 ORTHO05D003312 3.9e-18 96.3 397 24.4
Cfa020391 Carpinus fangiana HOM05D003087 ORTHO05D003312 3.9e-18 96.3 187 36.4
Eucgr.L03287 Eucalyptus grandis HOM05D003087 ORTHO05D003312 3.9e-18 96.3 171 31.0
Lj6g0025252 Lotus japonicus HOM05D003087 ORTHO05D003312 3.9e-18 96.3 177 35.0
TPR.G37757 Trifolium pratense HOM05D003087 ORTHO05D003312 3.9e-18 96.3 146 37.0
Lj5g0027658 Lotus japonicus HOM05D003087 ORTHO05D003312 5.1e-18 95.9 168 33.9
MELO3C003962.2 Cucumis melo HOM05D003087 ORTHO05D003312 8.7e-18 95.1 188 33.5
Psat5g183360 Pisum sativum HOM05D003087 ORTHO05D003312 1.1e-17 94.7 191 32.5
Phvul.008G265200 Phaseolus vulgaris HOM05D003087 ORTHO05D003312 1.9e-17 94.0 137 35.8
MD03G1208600 Malus domestica HOM05D003087 ORTHO05D003312 2.5e-17 93.6 165 29.7
Cfa020390 Carpinus fangiana HOM05D003087 ORTHO05D003312 4.3e-17 92.8 179 34.6
Lj1C869T9 Lonicera japonica HOM05D003087 ORTHO05D003312 4.3e-17 92.8 152 36.8
Psat6g174320 Pisum sativum HOM05D003087 ORTHO05D003312 7.4e-17 92.0 170 27.6
CANSAT78G0127 Cannabis sativa HOM05D003087 ORTHO05D003312 9.6e-17 91.7 140 37.1
Thhalv10003319m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 9.6e-17 91.7 138 38.4
Lalb_Chr04g0248611 Lupinus albus HOM05D003087 ORTHO05D003312 1.3e-16 91.3 132 34.8
CARHR054070 Cardamine hirsuta HOM05D003087 ORTHO05D003312 3.6e-16 89.7 348 28.2
Migut.M01788 Erythranthe guttata HOM05D003087 ORTHO05D003312 4.8e-16 89.4 163 32.5
Glyma.10G200400 Glycine max HOM05D003087 ORTHO05D003312 4.8e-16 89.4 140 35.0
Medtr1g090907 Medicago truncatula HOM05D003087 ORTHO05D003312 4.8e-16 89.4 202 28.2
arahy.Tifrunner.gnm1.ann1.ELS2X1 Arachis hypogaea HOM05D003087 ORTHO05D003312 8.1e-16 88.6 178 29.8
Medtr2g048140 Medicago truncatula HOM05D003087 ORTHO05D003312 8.1e-16 88.6 128 35.9
arahy.Tifrunner.gnm1.ann1.BT26ZR Arachis hypogaea HOM05D003087 ORTHO05D003312 4.0e-15 86.3 130 32.3
LjContig00272g0016451 Lotus japonicus HOM05D003087 ORTHO05D003312 4.0e-15 86.3 145 33.8
arahy.Tifrunner.gnm1.ann1.RJB6DE Arachis hypogaea HOM05D003087 ORTHO05D003312 6.9e-15 85.5 137 32.8
TPR.G23589 Trifolium pratense HOM05D003087 ORTHO05D003312 6.9e-15 85.5 202 27.7
MD11G1222800 Malus domestica HOM05D003087 ORTHO05D003312 9.0e-15 85.1 150 35.3
LjContig00272g0019978 Lotus japonicus HOM05D003087 ORTHO05D003312 1.2e-14 84.7 128 35.9
Hma1.2p1_1271F.1_g271870 Hydrangea macrophylla HOM05D003087 ORTHO05D003312 2.9e-13 80.1 164 28.0
Prupe.4G208100 Prunus persica HOM05D003087 ORTHO05D003312 2.9e-13 80.1 230 27.0
arahy.Tifrunner.gnm1.ann1.U37KZ8 Arachis hypogaea HOM05D003087 ORTHO05D003312 6.4e-13 79.0 170 28.8
LjContig00272g0016156 Lotus japonicus HOM05D003087 ORTHO05D003312 6.4e-13 79.0 129 32.6
Medtr1g090903 Medicago truncatula HOM05D003087 ORTHO05D003312 8.4e-13 78.6 316 22.8
Cpa.g.sc97.39 Carica papaya HOM05D003087 ORTHO05D003312 1.1e-12 78.2 112 36.6
Haze_09620 Corylus avellana HOM05D003087 ORTHO05D003312 1.1e-12 78.2 163 33.7
CSS0040473 Camellia sinensis var. sinensis HOM05D003087 ORTHO05D003312 1.4e-12 77.8 108 37.0
Eucgr.F00967 Eucalyptus grandis HOM05D003087 ORTHO05D003312 1.9e-12 77.4 113 35.4
Medtr3g049530 Medicago truncatula HOM05D003087 ORTHO05D003312 3.2e-12 76.6 199 29.6
Carub.0004s2753 Capsella rubella HOM05D003087 ORTHO05D003312 5.5e-12 75.9 313 24.3
RcHm_v2.0_Chr1g0363631 Rosa chinensis HOM05D003087 ORTHO05D003312 1.6e-11 74.3 185 31.9
Medtr5g066890 Medicago truncatula HOM05D003087 ORTHO05D003312 2.1e-11 73.9 85 41.2
CDE05G0823 Ceratophyllum demersum HOM05D003087 ORTHO05D003312 3.5e-11 73.2 174 27.6
Medtr7g029260 Medicago truncatula HOM05D003087 ORTHO05D003312 7.9e-11 72.0 109 30.3
LjContig00272g0017385 Lotus japonicus HOM05D003087 ORTHO05D003312 7.4e-09 65.5 84 38.1
LjContig00272g0021764 Lotus japonicus HOM05D003087 ORTHO05D003312 7.4e-09 65.5 84 38.1
Thhalv10015684m.g Eutrema salsugineum HOM05D003087 ORTHO05D003312 9.6e-09 65.1 75 50.7
Glyma.08G312700 Glycine max HOM05D003087 ORTHO05D003312 2.8e-08 63.5 275 24.7
Glyma.09G102300 Glycine max HOM05D003087 ORTHO05D003312 4.8e-08 62.8 267 25.5
Nn1g03911 Nelumbo nucifera HOM05D000576 ORTHO05D003312 6.2e-08 62.4 153 25.5
LjContig00272g0000872 Lotus japonicus HOM05D003087 ORTHO05D003312 1.4e-07 61.2 71 40.8
BcaC03g14740 Brassica carinata HOM05D003087 ORTHO05D003312 3.1e-07 60.1 83 38.6
TAR624G0459 Trochodendron aralioides HOM05D001396 ORTHO05D000493 3.1e-07 60.1 182 26.9
TAR624G1446 Trochodendron aralioides HOM05D001396 ORTHO05D000493 4.0e-07 59.7 147 28.6
BcaB01g04330 Brassica carinata HOM05D003087 ORTHO05D003312 1.2e-06 58.2 65 46.2
FvH4_7g19741 Fragaria vesca HOM05D003087 ORTHO05D003312 1.2e-06 58.2 173 27.7
HPP92_016299 Vanilla planifolia HOM05D005918 ORTHO05D008619 1.5e-06 57.8 152 30.3
Lj1g0002440 Lotus japonicus HOM05D003087 ORTHO05D003312 2.0e-06 57.4 70 40.0
Nn1g06755 Nelumbo nucifera HOM05D001396 ORTHO05D000493 2.6e-06 57.0 165 24.8
QL04p018347 Quercus lobata HOM05D001396 ORTHO05D000493 2.6e-06 57.0 159 29.6
TAR624G0456 Trochodendron aralioides HOM05D003087 ORTHO05D003312 2.6e-06 57.0 140 29.3
Cpa.g.sc97.42 Carica papaya HOM05D003087 ORTHO05D003312 3.4e-06 56.6 85 34.1
QL03p053101 Quercus lobata HOM05D001396 ORTHO05D000493 4.5e-06 56.2 155 29.7
QL05p081980 Quercus lobata HOM05D001396 ORTHO05D000493 4.5e-06 56.2 155 29.7
Duzib170G0141 Durio zibethinus HOM05D003087 ORTHO05D003312 7.6e-06 55.5 91 35.2
FAN01G1579 Fragaria x ananassa HOM05D003087 ORTHO05D003312 7.6e-06 55.5 173 27.2
FAN03G1508 Fragaria x ananassa HOM05D003087 ORTHO05D003312 1.0e-05 55.1 171 25.7
Nn4g26455 Nelumbo nucifera HOM05D000051 ORTHO05D003312 1.0e-05 55.1 222 24.8
Psat6g076920 Pisum sativum HOM05D003087 ORTHO05D003312 1.0e-05 55.1 138 28.3


User provided reference genes

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