Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.1e-195 685.6 371 100.0
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 5.6e-193 677.6 371 98.4
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 4.0e-191 671.4 371 97.6
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 2.4e-188 662.1 371 95.4
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 6.0e-187 657.5 371 94.9
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 3.9e-186 654.8 371 94.6
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 9.9e-182 640.2 371 92.5
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 9.9e-182 640.2 371 92.5
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.7e-181 639.4 371 92.2
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 2.2e-181 639.0 370 93.0
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 3.2e-180 635.2 371 91.4
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 7.1e-180 634.0 371 91.4
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 7.1e-180 634.0 371 91.4
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 7.1e-180 634.0 371 91.1
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 3.5e-179 631.7 371 90.6
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 6.0e-179 630.9 371 90.8
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 7.8e-179 630.6 371 90.3
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 1.0e-178 630.2 373 91.7
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 4.3e-177 624.8 369 91.9
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 4.3e-177 624.8 369 91.9
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-176 623.2 369 92.1
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 8.1e-176 620.5 371 91.1
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.5e-174 616.3 369 90.8
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 6.6e-170 600.9 369 87.8
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 3.8e-157 558.5 371 81.7
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-144 516.9 296 92.9
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 2.7e-139 499.2 367 75.5
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 6.1e-139 498.0 366 75.4
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 5.1e-138 495.0 366 74.6
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 4.3e-137 491.9 371 74.7
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 5.7e-137 491.5 372 73.9
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 8.2e-136 487.6 368 75.3
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 2.4e-135 486.1 374 74.6
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 2.0e-134 483.0 372 73.4
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 4.5e-134 481.9 317 85.8
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 4.5e-134 481.9 373 71.0
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 1.0e-133 480.7 374 73.3
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 2.2e-133 479.6 381 73.0
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 3.8e-133 478.8 367 73.8
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 3.8e-133 478.8 365 74.2
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 8.5e-133 477.6 344 77.3
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.2e-132 475.3 365 74.0
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 4.2e-132 475.3 344 77.0
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 9.4e-132 474.2 374 72.2
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 9.4e-132 474.2 378 69.8
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 1.2e-131 473.8 365 74.2
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-131 473.4 358 74.6
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.7e-131 472.6 366 73.2
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 2.7e-131 472.6 376 69.9
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 3.6e-131 472.2 369 72.1
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 6.1e-131 471.5 372 72.0
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 6.1e-131 471.5 373 71.8
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.0e-130 470.7 372 71.8
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.8e-130 469.9 371 71.4
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 1.8e-130 469.9 359 72.1
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 1.8e-130 469.9 372 70.2
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 1.8e-130 469.9 374 70.3
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.3e-130 469.5 358 73.7
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 3.0e-130 469.2 375 72.0
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 3.0e-130 469.2 376 69.1
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.1e-129 467.2 360 72.8
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 1.5e-129 466.8 372 71.8
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 2.0e-129 466.5 323 76.8
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 3.3e-129 465.7 375 69.3
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 9.7e-129 464.2 373 72.7
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 9.7e-129 464.2 326 77.0
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 2.8e-128 462.6 342 74.6
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.8e-128 462.6 335 76.7
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 4.8e-128 461.8 379 69.4
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 8.2e-128 461.1 327 77.4
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.4e-127 459.5 359 72.1
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 3.1e-127 459.1 375 71.2
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 5.3e-127 458.4 379 69.4
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 9.1e-127 457.6 323 78.3
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 4.5e-126 455.3 378 69.3
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 5.9e-126 454.9 328 75.3
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 7.7e-126 454.5 366 70.5
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 7.7e-126 454.5 361 70.1
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 2.2e-125 453.0 322 75.8
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 2.9e-125 452.6 338 74.0
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 3.8e-125 452.2 330 75.2
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 5.0e-125 451.8 373 68.1
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 5.0e-125 451.8 292 84.6
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 6.5e-125 451.4 366 69.9
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 6.5e-125 451.4 322 76.1
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 6.5e-125 451.4 370 68.1
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 8.5e-125 451.1 371 69.8
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 8.5e-125 451.1 373 69.2
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 8.5e-125 451.1 326 74.2
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.9e-124 449.9 352 73.0
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.9e-124 449.9 366 69.7
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 3.2e-124 449.1 347 72.9
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 4.2e-124 448.7 382 68.1
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 4.2e-124 448.7 331 73.4
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 4.2e-124 448.7 362 70.2
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 9.4e-124 447.6 365 69.6
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 1.2e-123 447.2 348 73.0
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.2e-123 447.2 341 72.4
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.2e-123 447.2 370 67.8
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.6e-123 446.8 339 72.3
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 1.6e-123 446.8 352 71.0
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.1e-123 446.4 371 70.6
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.7e-123 446.0 362 69.9
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 3.6e-123 445.7 367 69.8
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 4.7e-123 445.3 371 66.8
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 6.1e-123 444.9 351 71.2
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 6.1e-123 444.9 329 73.9
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 8.0e-123 444.5 349 66.8
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 1.8e-122 443.4 345 71.9
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 8.8e-122 441.0 378 67.7
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 7.5e-121 438.0 321 74.5
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.3e-120 437.2 373 67.0
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 3.7e-120 435.6 353 70.8
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.6e-118 430.3 353 68.3
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 5.5e-116 421.8 331 71.3
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 1.6e-115 420.2 371 66.6
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 3.6e-115 419.1 368 65.2
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.3e-112 410.6 358 66.2
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.7e-112 410.2 323 70.6
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 4.2e-108 395.6 378 60.1
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 6.1e-107 391.7 369 64.2
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 2.0e-105 386.7 243 87.7
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 3.4e-105 386.0 329 65.0
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 5.4e-103 378.6 326 64.1
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 1.2e-102 377.5 359 61.0
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 7.5e-97 358.2 345 59.1
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 1.4e-95 354.0 247 79.8
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 2.0e-94 350.1 330 60.6
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.7e-88 330.5 297 60.3
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 9.2e-87 324.7 335 57.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 1.6e-83 313.9 206 77.2
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 4.4e-81 305.8 337 54.3
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 6.0e-78 295.4 330 55.2
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.2e-75 287.7 324 55.9
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.4e-71 274.2 242 60.3
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 3.8e-56 223.0 209 60.3
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.0e-53 214.9 261 49.8
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.8e-45 187.6 144 65.3
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 5.1e-45 186.0 165 60.6
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 1.2e-41 174.9 130 72.3
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 7.4e-36 155.6 164 58.5
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 5.5e-31 139.4 103 70.9
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 4.6e-30 136.3 78 89.7
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 2.5e-28 130.6 89 71.9
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 2.4e-26 124.0 95 69.5
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-25 121.3 68 89.7
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.0e-24 118.6 128 52.3
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.9e-23 114.4 110 53.6
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 9.4e-23 112.1 95 63.2
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.5e-20 104.8 66 80.3
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 4.4e-20 103.2 79 65.8
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 5.7e-20 102.8 126 49.2
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 2.4e-18 97.4 87 59.8
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 2.0e-17 94.4 282 31.6
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 3.8e-16 90.1 315 31.7
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 1.9e-15 87.8 269 33.1
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.0e-13 80.5 63 71.4
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 3.1e-10 70.5 69 59.4
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 3.1e-10 70.5 177 35.0
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.0e-10 69.3 49 67.3
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 9.1e-10 68.9 73 56.2
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.2e-09 68.6 49 67.3
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 1.2e-09 68.6 59 57.6
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 2.6e-09 67.4 67 52.2
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.5e-09 67.0 48 64.6
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.7e-09 65.9 50 64.0
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.0e-08 63.2 49 63.3
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 6.5e-08 62.8 44 68.2
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.5e-07 61.6 50 60.0
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 5.5e-07 59.7 43 69.8
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.1e-06 57.8 49 57.1
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-06 57.4 72 54.2
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.7e-06 57.4 72 54.2
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 3.6e-06 57.0 67 68.7


User provided reference genes

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