Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 6.5e-57 224.2 143 100.0
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 6.1e-47 191.0 144 91.0
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 3.1e-43 178.7 158 80.4
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 9.1e-43 177.2 143 86.0
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 3.6e-39 165.2 157 77.7
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 5.2e-38 161.4 116 74.1
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 5.2e-38 161.4 116 74.1
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.2e-37 160.2 119 74.8
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 2.6e-37 159.1 120 76.7
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 4.4e-37 158.3 155 75.5
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 4.1e-35 151.8 120 74.2
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 4.1e-35 151.8 120 74.2
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 4.1e-35 151.8 120 74.2
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 1.6e-34 149.8 116 75.0
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 4.0e-30 135.2 106 70.8
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 3.4e-29 132.1 106 69.8
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 3.4e-29 132.1 106 69.8
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 2.0e-26 122.9 103 65.0
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.9e-25 118.6 111 61.3
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 1.6e-23 113.2 72 76.4
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 1.1e-22 110.5 95 61.1
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.8e-22 109.8 84 69.0
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.2e-21 107.1 63 77.8
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 5.8e-21 104.8 116 53.4
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 5.8e-21 104.8 117 53.0
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.5e-21 104.4 84 65.5
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 1.3e-20 103.6 113 54.0
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.2e-20 102.8 85 67.1
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 2.2e-20 102.8 121 52.9
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 2.9e-20 102.4 76 69.7
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.9e-20 101.7 111 55.9
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 6.4e-20 101.3 86 65.1
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 8.3e-20 100.9 116 56.0
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-19 100.5 111 55.0
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-19 100.5 85 65.9
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.4e-19 100.1 54 85.2
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 2.4e-19 99.4 52 88.5
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.4e-19 99.4 85 64.7
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 4.1e-19 98.6 126 51.6
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 4.1e-19 98.6 76 65.8
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 1.2e-18 97.1 53 86.8
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 1.6e-18 96.7 70 72.9
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 6.0e-18 94.7 53 83.0
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 1.0e-17 94.0 53 79.2
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.3e-17 93.6 63 74.6
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.7e-17 93.2 61 73.8
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 2.3e-17 92.8 63 74.6
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 5.0e-17 91.7 60 73.3
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 5.0e-17 91.7 76 64.5
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.0e-17 91.7 68 67.6
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.0e-17 91.7 110 50.0
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 8.6e-17 90.9 87 58.6
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.1e-16 90.5 78 61.5
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 1.9e-16 89.7 58 72.4
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 1.9e-16 89.7 54 77.8
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 2.5e-16 89.4 98 54.1
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 5.6e-16 88.2 112 51.8
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 7.3e-16 87.8 112 49.1
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 7.3e-16 87.8 94 55.3
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 7.3e-16 87.8 47 89.4
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 9.5e-16 87.4 71 63.4
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 1.6e-15 86.7 60 68.3
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 2.1e-15 86.3 89 57.3
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 2.8e-15 85.9 84 58.3
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 3.6e-15 85.5 64 65.6
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.6e-15 85.5 50 82.0
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 4.7e-15 85.1 63 71.4
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 4.7e-15 85.1 63 71.4
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.4e-14 83.6 53 73.6
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 2.3e-14 82.8 104 50.0
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 2.3e-14 82.8 120 50.0
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.3e-14 82.8 62 71.0
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.1e-14 82.4 88 55.7
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 3.1e-14 82.4 101 53.5
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 4.0e-14 82.0 47 80.9
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 4.0e-14 82.0 99 55.6
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 4.0e-14 82.0 67 67.2
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 4.0e-14 82.0 50 76.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 5.2e-14 81.6 125 48.0
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 5.2e-14 81.6 125 48.0
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 5.2e-14 81.6 102 51.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.2e-13 80.5 119 47.1
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 1.5e-13 80.1 54 72.2
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 2.0e-13 79.7 123 45.5
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.0e-13 79.7 40 85.0
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 2.0e-13 79.7 68 61.8
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 2.0e-13 79.7 48 83.3
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 2.6e-13 79.3 45 80.0
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 3.4e-13 79.0 54 70.4
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 3.4e-13 79.0 50 76.0
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 4.4e-13 78.6 90 53.3
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 4.4e-13 78.6 59 66.1
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 7.5e-13 77.8 41 85.4
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 7.5e-13 77.8 85 52.9
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 7.5e-13 77.8 91 50.5
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 7.5e-13 77.8 41 87.8
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 9.9e-13 77.4 51 76.5
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 9.9e-13 77.4 39 84.6
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.7e-12 76.6 49 73.5
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 2.9e-12 75.9 101 52.5
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 3.7e-12 75.5 48 75.0
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 4.9e-12 75.1 50 72.0
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.4e-12 74.7 97 48.5
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 6.4e-12 74.7 99 48.5
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 8.3e-12 74.3 36 91.7
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 8.3e-12 74.3 36 91.7
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 8.3e-12 74.3 55 65.5
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 1.1e-11 73.9 37 86.5
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.4e-11 73.6 81 54.3
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 1.9e-11 73.2 47 74.5
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 2.4e-11 72.8 55 70.9
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 3.2e-11 72.4 46 76.1
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 3.2e-11 72.4 35 91.4
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 4.1e-11 72.0 43 74.4
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 5.4e-11 71.6 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 5.4e-11 71.6 35 91.4
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 5.4e-11 71.6 76 55.3
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 5.4e-11 71.6 45 77.8
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 7.1e-11 71.2 131 43.5
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 9.2e-11 70.9 43 74.4
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 9.2e-11 70.9 36 80.6
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.2e-10 70.5 95 47.4
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 3.5e-10 68.9 36 77.8
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 3.5e-10 68.9 41 75.6
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 1.0e-09 67.4 35 80.0
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 6.6e-09 64.7 111 38.7
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 8.6e-09 64.3 75 48.0
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 8.6e-09 64.3 39 71.8
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 3.1e-06 55.8 42 66.7


User provided reference genes

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