Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.1e-267 926.0 470 100.0
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 2.0e-243 845.5 471 91.3
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 6.3e-226 787.3 470 84.7
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 7.3e-222 773.9 471 84.7
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 7.5e-211 737.3 470 80.6
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 9.8e-211 736.9 427 86.7
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 9.2e-209 730.3 470 78.7
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 9.2e-209 730.3 470 78.7
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 1.4e-204 716.5 473 77.8
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 6.8e-204 714.1 471 77.1
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 6.8e-204 714.1 471 77.1
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 9.2e-193 677.2 437 77.6
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 5.6e-174 614.8 410 77.1
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 6.1e-152 541.6 428 67.1
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 1.2e-147 527.3 429 60.6
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 2.9e-146 522.7 430 59.3
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 5.7e-142 508.4 433 58.2
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 1.7e-141 506.9 426 58.9
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 2.8e-141 506.1 433 58.0
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 5.0e-138 495.4 418 58.1
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 1.9e-137 493.4 435 57.2
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.2e-136 490.7 415 59.8
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 1.2e-136 490.7 415 59.8
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 1.6e-136 490.3 414 59.7
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 2.1e-136 490.0 420 60.0
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 1.4e-135 487.3 436 56.2
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 1.4e-135 487.3 429 56.4
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 5.2e-135 485.3 430 57.0
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 1.5e-134 483.8 418 58.1
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.2e-133 479.9 416 57.0
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 6.3e-133 478.4 416 56.7
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 2.4e-132 476.5 459 54.7
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 5.3e-132 475.3 436 55.5
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 9.1e-132 474.6 417 58.5
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 2.0e-131 473.4 416 57.2
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 5.9e-131 471.9 416 57.0
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.7e-130 470.3 416 56.2
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 3.8e-130 469.2 423 55.1
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 8.5e-130 468.0 426 55.2
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 1.1e-129 467.6 427 56.7
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 6.1e-128 461.8 416 55.3
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 4.0e-127 459.1 418 55.3
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 5.2e-127 458.8 417 53.5
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 6.7e-127 458.4 299 79.6
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 4.8e-125 452.2 422 56.2
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 2.4e-124 449.9 428 53.0
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 1.2e-123 447.6 462 51.9
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 3.5e-123 446.0 419 53.2
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 5.9e-123 445.3 421 54.6
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 3.2e-121 439.5 427 53.4
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 3.6e-120 436.0 454 50.9
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 6.8e-119 431.8 419 52.5
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 2.0e-118 430.3 419 52.5
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 5.7e-118 428.7 420 54.0
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 1.1e-116 424.5 417 52.0
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 2.0e-115 420.2 430 50.5
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 1.0e-114 417.9 415 52.0
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 2.1e-112 410.2 429 51.3
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 4.0e-111 406.0 419 49.4
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 8.9e-111 404.8 416 50.2
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 2.0e-110 403.7 425 50.8
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.6e-110 403.3 354 55.6
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 3.7e-109 399.4 433 49.2
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 1.4e-108 397.5 426 50.5
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 3.1e-108 396.4 431 49.7
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 4.1e-108 396.0 418 49.3
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 7.0e-108 395.2 415 48.4
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 3.5e-107 392.9 420 47.6
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 6.6e-106 388.7 217 89.4
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 5.6e-105 385.6 430 49.3
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 7.3e-105 385.2 417 48.9
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 2.3e-103 380.2 429 46.9
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 6.4e-101 372.1 429 45.7
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 8.3e-101 371.7 426 47.4
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 6.6e-98 362.1 358 52.8
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 1.2e-96 357.8 416 47.8
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 2.8e-96 356.7 413 48.4
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 3.6e-96 356.3 418 45.2
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 7.5e-94 348.6 424 47.2
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 1.0e-90 338.2 417 46.0
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 9.5e-89 331.6 433 43.4
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 6.2e-88 328.9 418 44.3
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 1.2e-86 324.7 434 42.2
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 3.7e-85 319.7 413 44.3
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 1.4e-84 317.8 416 41.3
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 4.1e-84 316.2 426 44.1
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 5.4e-84 315.8 453 41.9
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 2.7e-83 313.5 415 42.9
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 2.7e-83 313.5 453 42.2
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 4.6e-83 312.8 453 41.9
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 7.8e-83 312.0 353 47.0
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 1.5e-81 307.8 418 41.4
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 1.3e-72 278.1 433 38.1
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.7e-69 267.7 248 53.2
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.6e-67 261.2 236 53.8
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 5.1e-66 256.1 280 47.1
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 5.6e-65 252.7 422 37.9
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 1.3e-53 214.9 405 33.3
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.1e-52 211.8 185 57.3
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 1.8e-50 204.5 422 32.5
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.2e-43 181.8 177 48.6
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 2.3e-34 151.0 170 44.1
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 4.2e-28 130.2 178 39.9
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 7.2e-28 129.4 171 43.9
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 9.4e-28 129.0 122 51.6
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 1.5e-25 121.7 359 24.0
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 3.3e-25 120.6 401 23.7
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 4.4e-25 120.2 199 37.7
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 4.8e-24 116.7 139 42.4
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 7.0e-23 112.8 124 44.4
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 7.0e-23 112.8 124 44.4
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 1.0e-21 109.0 215 32.1
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 3.2e-20 104.0 133 42.1
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 9.4e-20 102.4 126 44.4
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 4.0e-18 97.1 117 42.7
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 9.7e-17 92.4 120 39.2
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 3.5e-14 84.0 112 42.0
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 3.8e-13 80.5 137 41.6
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 6.8e-10 69.7 118 31.4
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 9.8e-09 65.9 103 34.0
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 1.7e-08 65.1 66 45.5
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 2.8e-08 64.3 91 36.3
Haze_03379 Corylus avellana HOM05D001269 ORTHO05D001083 2.8e-08 64.3 55 56.4
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 4.8e-08 63.5 140 31.4
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 1.8e-07 61.6 164 28.0
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 1.8e-07 61.6 91 35.2
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 7.0e-07 59.7 95 33.7
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 7.0e-07 59.7 101 31.7
Rhsim13G0003800 Rhododendron simsii HOM05D004127 ORTHO05D005119 7.0e-07 59.7 239 21.8
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.2e-06 58.9 91 35.2
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 1.6e-06 58.5 91 31.9
Rhsim01G0292100 Rhododendron simsii HOM05D004127 ORTHO05D005119 1.6e-06 58.5 239 23.4
vmacro02392 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 2.0e-06 58.2 239 21.3
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 4.5e-06 57.0 91 33.0
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 7.7e-06 56.2 91 34.1


User provided reference genes

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