Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 8.9e-102 373.6 192 100.0
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 2.0e-93 345.9 187 94.1
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 3.9e-89 331.6 188 89.4
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 8.7e-89 330.5 188 88.3
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 7.3e-88 327.4 187 87.7
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 7.3e-88 327.4 187 87.7
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 3.6e-87 325.1 182 90.7
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 6.2e-87 324.3 187 87.7
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 1.4e-86 323.2 181 88.4
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 3.4e-85 318.5 186 86.6
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 3.2e-83 312.0 173 88.4
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 1.5e-80 303.1 174 88.5
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 1.3e-73 280.0 182 75.3
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 2.1e-66 256.1 179 70.9
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 1.9e-59 233.0 171 69.0
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 3.2e-59 232.3 179 64.8
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 1.8e-57 226.5 179 62.6
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 3.9e-57 225.3 179 63.1
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 3.9e-57 225.3 179 63.1
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 8.8e-57 224.2 176 63.1
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 5.7e-56 221.5 178 62.9
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 5.7e-56 221.5 176 61.9
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 7.4e-56 221.1 182 59.9
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 1.3e-55 220.3 175 61.7
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 1.3e-55 220.3 175 62.3
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 1.7e-55 219.9 175 62.3
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 3.7e-55 218.8 178 62.4
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 3.7e-55 218.8 178 62.4
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 8.2e-55 217.6 176 62.5
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 1.1e-54 217.2 175 61.1
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 1.1e-54 217.2 179 59.8
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 3.1e-54 215.7 172 58.7
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 3.1e-54 215.7 171 62.0
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 4.1e-54 215.3 175 60.6
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 4.1e-54 215.3 176 59.7
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 4.1e-54 215.3 178 59.0
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 4.1e-54 215.3 183 57.4
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 5.3e-54 214.9 172 62.2
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 5.3e-54 214.9 175 61.1
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 6.9e-54 214.5 175 60.0
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 9.1e-54 214.2 172 58.7
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 1.2e-53 213.8 180 59.4
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 1.5e-53 213.4 172 58.1
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 1.5e-53 213.4 172 58.7
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 1.5e-53 213.4 171 62.6
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 3.4e-53 212.2 175 58.9
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 5.9e-53 211.5 179 58.1
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 2.2e-52 209.5 175 59.4
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 3.8e-52 208.8 182 57.7
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 3.8e-52 208.8 172 59.9
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 5.0e-52 208.4 180 57.8
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 8.5e-52 207.6 171 57.9
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 8.5e-52 207.6 178 57.3
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 1.1e-51 207.2 194 55.2
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 1.9e-51 206.5 174 59.2
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 1.9e-51 206.5 171 57.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.5e-51 206.1 171 57.9
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.2e-51 205.3 171 57.9
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 4.2e-51 205.3 174 59.2
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 9.4e-51 204.1 179 56.4
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.2e-50 203.8 171 57.3
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 7.9e-50 201.1 181 56.9
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 1.4e-49 200.3 175 58.3
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 1.4e-49 200.3 169 56.2
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 3.0e-49 199.1 156 62.2
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 1.5e-48 196.8 175 57.1
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 1.5e-48 196.8 152 63.8
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 4.4e-48 195.3 170 55.9
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 4.4e-48 195.3 174 54.0
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 5.7e-48 194.9 171 57.3
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 5.7e-48 194.9 181 54.1
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 9.7e-48 194.1 159 59.1
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 1.7e-47 193.4 177 57.6
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 2.2e-47 193.0 158 59.5
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 2.2e-47 193.0 174 55.2
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 3.7e-47 192.2 175 54.3
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 4.8e-47 191.8 156 60.3
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 6.3e-47 191.4 171 55.6
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 1.1e-46 190.7 175 53.7
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 1.8e-46 189.9 171 54.4
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 3.1e-46 189.1 141 65.2
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 4.5e-45 185.3 183 50.3
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 2.2e-44 183.0 174 52.3
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 3.8e-44 182.2 176 51.1
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 1.1e-43 180.6 160 55.0
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 4.2e-43 178.7 158 55.7
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 5.7e-40 168.3 194 47.9
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 9.7e-40 167.5 194 47.9
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 1.3e-39 167.2 194 44.8
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 1.3e-39 167.2 190 48.9
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 3.5e-37 159.1 136 57.4
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 1.3e-36 157.1 189 43.9
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 2.2e-36 156.4 109 76.1
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 8.5e-36 154.5 132 58.3
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 1.1e-35 154.1 201 42.3
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 2.5e-35 152.9 136 55.1
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 4.2e-35 152.1 130 56.2
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 2.7e-34 149.4 131 55.0
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.4e-33 147.1 182 43.4
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 3.0e-33 146.0 132 54.5
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 5.2e-33 145.2 131 55.0
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 4.4e-32 142.1 132 58.3
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 1.8e-30 136.7 132 50.8
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 2.0e-29 133.3 98 61.2
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 1.9e-27 126.7 104 60.6
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 8.8e-25 117.9 136 47.8
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 7.5e-24 114.8 175 38.9
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 2.4e-22 109.8 165 37.6
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 2.3e-20 103.2 152 38.8
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 6.8e-17 91.7 147 40.8
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 3.1e-14 82.8 150 33.3
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 2.7e-13 79.7 157 33.1
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.5e-11 73.9 137 33.6
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 2.0e-08 63.5 48 56.2
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 2.4e-06 56.6 69 42.0


User provided reference genes

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