Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 1.5e-165 586.3 324 100.0
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 3.3e-149 531.9 360 83.3
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 1.7e-145 519.6 341 83.3
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 2.5e-136 489.2 339 80.8
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 2.5e-136 489.2 339 80.8
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 2.5e-136 489.2 339 80.8
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 9.4e-136 487.3 339 80.5
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 2.1e-135 486.1 339 80.5
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 1.8e-134 483.0 331 81.0
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 1.8e-134 483.0 339 82.0
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 3.9e-134 481.9 339 81.4
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 1.5e-133 479.9 341 80.6
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 1.5e-133 479.9 371 77.6
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 2.0e-133 479.6 331 80.4
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 7.4e-133 477.6 331 80.4
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 1.4e-128 463.4 342 72.8
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 4.2e-128 461.8 377 75.1
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 2.5e-112 409.5 320 74.7
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 7.5e-109 397.9 332 65.1
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 2.0e-98 363.2 347 67.7
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 2.6e-93 346.3 326 62.0
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 2.3e-89 333.2 325 61.5
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.5e-88 330.5 329 55.9
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 5.6e-88 328.6 329 55.6
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 9.5e-88 327.8 338 61.5
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.1e-87 326.6 331 55.3
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 4.7e-87 325.5 323 53.9
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 2.3e-86 323.2 343 53.9
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 3.1e-86 322.8 328 56.1
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 3.1e-86 322.8 328 58.2
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 4.0e-86 322.4 321 61.1
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 1.5e-85 320.5 335 53.7
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 2.0e-85 320.1 325 58.8
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 2.6e-85 319.7 309 57.3
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 2.6e-85 319.7 331 58.3
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.7e-84 317.0 364 57.1
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 1.7e-84 317.0 306 60.8
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 1.7e-84 317.0 331 51.4
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 2.2e-84 316.6 331 53.5
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 4.9e-84 315.5 340 52.6
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 4.9e-84 315.5 326 50.0
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 3.2e-83 312.8 324 56.2
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 9.2e-83 311.2 352 52.8
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.3e-81 307.4 345 58.3
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 3.0e-81 306.2 362 57.2
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 3.9e-81 305.8 341 55.7
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 3.9e-81 305.8 343 57.4
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 3.9e-81 305.8 341 51.3
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 6.6e-81 305.1 326 55.8
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 6.6e-81 305.1 352 58.2
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.1e-80 304.3 352 58.2
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 1.9e-80 303.5 321 58.3
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 2.5e-80 303.1 323 56.7
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 2.1e-79 300.1 330 53.0
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 4.7e-79 298.9 333 54.1
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 1.1e-78 297.7 327 49.8
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 1.4e-78 297.4 329 58.4
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 2.3e-78 296.6 334 54.2
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 3.1e-78 296.2 324 53.7
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 4.0e-78 295.8 325 50.8
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 4.0e-78 295.8 330 54.2
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 6.8e-78 295.0 334 50.0
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 8.9e-78 294.7 321 51.4
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 1.2e-77 294.3 330 53.9
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 7.5e-77 291.6 330 47.9
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 9.8e-77 291.2 322 45.7
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 1.3e-76 290.8 329 50.2
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 1.7e-76 290.4 324 51.5
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 2.2e-76 290.0 324 50.3
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 8.3e-76 288.1 324 45.4
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 1.1e-75 287.7 338 50.6
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 1.9e-75 287.0 332 50.0
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 5.4e-75 285.4 336 52.4
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 5.4e-75 285.4 337 47.5
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 7.1e-75 285.0 331 55.3
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 7.1e-75 285.0 324 53.7
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 4.6e-74 282.3 323 47.7
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 6.0e-74 282.0 328 52.1
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 6.6e-73 278.5 360 47.2
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 7.3e-72 275.0 307 49.2
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 7.3e-72 275.0 349 46.1
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 9.5e-72 274.6 316 50.9
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 1.6e-71 273.9 321 51.1
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 3.6e-71 272.7 325 45.8
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 4.7e-71 272.3 378 46.8
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 2.3e-70 270.0 321 48.0
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 2.0e-69 266.9 330 52.7
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 3.4e-69 266.2 325 51.4
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 5.8e-69 265.4 340 52.1
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 9.9e-69 264.6 354 45.5
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.9e-68 263.1 326 43.6
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 3.7e-68 262.7 325 52.9
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.4e-67 260.8 325 43.4
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.9e-67 260.4 324 42.9
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 3.2e-67 259.6 322 47.5
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 9.2e-67 258.1 273 53.8
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 6.0e-66 255.4 311 45.3
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.0e-65 254.6 306 49.0
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 6.6e-65 251.9 328 43.9
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 4.3e-64 249.2 321 52.3
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.6e-63 247.3 325 45.5
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 1.6e-63 247.3 328 44.2
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 1.6e-63 247.3 326 42.6
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 6.6e-57 225.3 320 45.9
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 3.3e-56 223.0 261 52.9
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 3.6e-55 219.5 332 41.0
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 6.2e-55 218.8 304 41.1
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 9.9e-53 211.5 289 42.2
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.4e-51 205.7 313 43.1
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 8.7e-49 198.4 323 36.2
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 4.0e-46 189.5 313 44.4
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 4.2e-43 179.5 383 36.0
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 8.7e-41 171.8 233 41.2
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 6.2e-39 165.6 130 58.5
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 2.9e-36 156.8 128 58.6
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 1.4e-35 154.5 207 46.4
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 3.0e-33 146.7 162 53.1
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 3.0e-33 146.7 115 59.1
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 2.9e-28 130.2 304 38.5
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 6.1e-26 122.5 142 41.5
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 5.7e-24 115.9 291 31.6
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 9.7e-24 115.2 308 27.6
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.9e-22 109.0 93 50.5
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 6.9e-22 109.0 273 29.7
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 5.9e-21 105.9 221 43.0
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 4.2e-19 99.8 142 36.6
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 4.6e-18 96.3 334 27.5
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 5.1e-09 66.2 57 52.6
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 5.1e-09 66.2 51 54.9
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 4.8e-07 59.7 110 39.1
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 8.2e-07 58.9 110 39.1
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 2.4e-06 57.4 109 35.8
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 5.3e-06 56.2 96 37.5


User provided reference genes

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