Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G48010 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 3.6e-92 341.7 182 100.0
Thhalv10002311m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.5e-82 309.7 190 87.9
CARHR110580 Cardamine hirsuta HOM05D003644 ORTHO05D004305 2.0e-79 299.3 182 87.9
Sp3g33380 Schrenkiella parvula HOM05D003644 ORTHO05D004305 7.7e-79 297.4 194 86.1
C08p42300 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-77 292.7 187 81.3
BolC8t51790H Brassica oleracea HOM05D003644 ORTHO05D004305 1.9e-77 292.7 187 81.3
BcaC07g41224 Brassica carinata HOM05D003644 ORTHO05D004305 4.2e-77 291.6 187 81.3
A09p59020 Brassica napus HOM05D003644 ORTHO05D004305 1.6e-76 289.7 187 80.7
BraA09t41288Z Brassica rapa HOM05D003644 ORTHO05D004305 1.6e-76 289.7 187 80.7
Carub.0003s3436 Capsella rubella HOM05D003644 ORTHO05D004305 6.5e-70 267.7 182 81.3
BcaC07g41225 Brassica carinata HOM05D003644 ORTHO05D004305 3.0e-67 258.8 185 74.1
BcaB08g34898 Brassica carinata HOM05D003644 ORTHO05D004305 5.2e-67 258.1 187 73.3
BcaNung04091 Brassica carinata HOM05D003644 ORTHO05D004305 5.2e-67 258.1 187 77.0
A09p12690 Brassica napus HOM05D003644 ORTHO05D004305 1.7e-62 243.0 190 72.1
C09p15050 Brassica napus HOM05D003644 ORTHO05D004305 2.9e-62 242.3 188 74.5
BcaC04g22808 Brassica carinata HOM05D003644 ORTHO05D004305 4.7e-60 235.0 192 72.4
BolC9t54408H Brassica oleracea HOM05D003644 ORTHO05D004305 4.7e-60 235.0 192 72.4
AT2G20080 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 8.0e-60 234.2 183 75.4
Aa31LG8G17030 Aethionema arabicum HOM05D003644 ORTHO05D004305 2.2e-57 226.1 181 74.6
THA.LOC104814562 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 7.8e-55 217.6 209 62.7
Carub.0007s1180 Capsella rubella HOM05D003644 ORTHO05D004305 1.1e-53 213.8 206 65.5
AT4G28840 Arabidopsis thaliana HOM05D003644 ORTHO05D004305 2.1e-52 209.5 200 67.0
BolC7t40541H Brassica oleracea HOM05D003644 ORTHO05D004305 4.7e-52 208.4 194 63.4
BcaC06g32601 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-49 200.3 197 61.9
BolC7t46126H Brassica oleracea HOM05D003644 ORTHO05D004305 1.7e-49 199.9 197 62.4
A03p58450 Brassica napus HOM05D003644 ORTHO05D004305 4.9e-49 198.4 197 61.9
C07p56470 Brassica napus HOM05D003644 ORTHO05D004305 1.1e-48 197.2 197 61.9
BraA09t36915Z Brassica rapa HOM05D003644 ORTHO05D004305 4.1e-48 195.3 182 62.6
C07p01040 Brassica napus HOM05D003644 ORTHO05D004305 1.9e-45 186.4 192 59.4
C01p10620 Brassica napus HOM05D003644 ORTHO05D004305 4.3e-45 185.3 199 58.8
BraA01t00855Z Brassica rapa HOM05D003644 ORTHO05D004305 4.3e-45 185.3 199 58.8
BolC1t01024H Brassica oleracea HOM05D003644 ORTHO05D004305 2.1e-44 183.0 199 58.3
A01p09070 Brassica napus HOM05D003644 ORTHO05D004305 2.8e-44 182.6 199 58.3
Sp7g26840 Schrenkiella parvula HOM05D003644 ORTHO05D004305 8.1e-44 181.0 197 62.9
A07p00580 Brassica napus HOM05D003644 ORTHO05D004305 6.8e-43 177.9 193 58.5
THA.LOC104804017 Tarenaya hassleriana HOM05D003644 ORTHO05D004305 3.4e-42 175.6 202 56.9
BcaNung01359 Brassica carinata HOM05D003644 ORTHO05D004305 1.4e-40 170.2 188 59.0
Aa31LG2G21540 Aethionema arabicum HOM05D003644 ORTHO05D004305 3.5e-39 165.6 176 63.1
BcaC09g51666 Brassica carinata HOM05D003644 ORTHO05D004305 6.0e-39 164.9 189 56.6
BcaB03g16807 Brassica carinata HOM05D003644 ORTHO05D004305 3.0e-38 162.5 190 55.8
Thecc.09G105500 Theobroma cacao HOM05D003644 ORTHO05D004305 3.0e-38 162.5 212 49.5
Duzib187G1156 Durio zibethinus HOM05D003644 ORTHO05D004305 3.9e-38 162.2 212 49.5
Duzib150G1566 Durio zibethinus HOM05D003644 ORTHO05D004305 1.5e-37 160.2 211 50.7
GSVIVG01015346001 Vitis vinifera HOM05D003644 ORTHO05D004305 3.3e-37 159.1 207 48.8
Duzib168G0231 Durio zibethinus HOM05D003644 ORTHO05D004305 2.1e-36 156.4 214 50.9
BcaC06g36690 Brassica carinata HOM05D003644 ORTHO05D004305 2.8e-36 156.0 116 74.1
Manes.16G112500 Manihot esculenta HOM05D003644 ORTHO05D004305 4.7e-36 155.2 208 49.0
Thhalv10026355m.g Eutrema salsugineum HOM05D003644 ORTHO05D004305 1.4e-35 153.7 193 52.8
Ciclev10010512m.g Citrus clementina HOM05D003644 ORTHO05D004305 1.8e-35 153.3 211 48.3
Cpa.g.sc23.57 Carica papaya HOM05D003644 ORTHO05D004305 3.1e-35 152.5 203 46.3
Potri.018G084100 Populus trichocarpa HOM05D003644 ORTHO05D004305 8.9e-35 151.0 214 46.3
BraA07t27854Z Brassica rapa HOM05D003644 ORTHO05D004305 9.9e-34 147.5 178 53.9
Manes.03G024200 Manihot esculenta HOM05D003644 ORTHO05D004305 1.4e-32 143.7 210 45.2
CSS0010496 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 7.1e-32 141.4 207 45.9
CSS0033414 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 7.1e-32 141.4 207 45.9
CiPaw.03G227900 Carya illinoinensis HOM05D003644 ORTHO05D004305 7.1e-32 141.4 217 47.9
CANSAT56G0200 Cannabis sativa HOM05D003644 ORTHO05D004305 9.2e-32 141.0 225 44.0
QL02p044635 Quercus lobata HOM05D003644 ORTHO05D004305 9.2e-32 141.0 213 47.9
Gorai.010G073900 Gossypium raimondii HOM05D003644 ORTHO05D004305 2.1e-31 139.8 202 51.0
VMungo0251G1747 Vigna mungo HOM05D003644 ORTHO05D004305 3.5e-31 139.0 207 44.4
MD02G1057600 Malus domestica HOM05D003644 ORTHO05D004305 1.0e-30 137.5 214 48.6
Glyma.05G229100 Glycine max HOM05D003644 ORTHO05D004305 1.3e-30 137.1 201 48.8
Haze_25785 Corylus avellana HOM05D003644 ORTHO05D004305 3.9e-30 135.6 208 44.7
TAR624G1421 Trochodendron aralioides HOM05D003644 ORTHO05D004305 5.1e-30 135.2 202 47.0
Phvul.002G311400 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 6.6e-30 134.8 206 42.7
PGR142G1369 Punica granatum HOM05D003644 ORTHO05D004305 6.6e-30 134.8 218 44.0
Sabra18G0072500 Salix brachista HOM05D003644 ORTHO05D004305 1.5e-29 133.7 233 40.3
Potri.006G161100 Populus trichocarpa HOM05D003644 ORTHO05D004305 1.9e-29 133.3 210 43.3
MBI04_g14930_MAGBIO Magnolia biondii HOM05D003644 ORTHO05D004305 4.3e-29 132.1 207 42.0
Prupe.7G225200 Prunus persica HOM05D003644 ORTHO05D004305 7.3e-29 131.3 218 47.2
Gohir.D06G063400 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.6e-29 131.0 199 49.2
FAN19G0617 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.6e-28 130.2 214 48.6
FAN26G3023 Fragaria x ananassa HOM05D003644 ORTHO05D004305 1.6e-28 130.2 212 50.0
FvH4_1g05660 Fragaria vesca HOM05D003644 ORTHO05D004305 2.1e-28 129.8 213 48.8
FAN26G0903 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.1e-28 129.8 212 50.0
FAN28G1311 Fragaria x ananassa HOM05D003644 ORTHO05D004305 6.2e-28 128.3 223 46.2
Glyma.08G036100 Glycine max HOM05D003644 ORTHO05D004305 8.1e-28 127.9 198 47.5
TWI34G1832 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 1.8e-27 126.7 217 46.5
Nn3g18137 Nelumbo nucifera HOM05D003644 ORTHO05D004305 2.4e-27 126.3 212 44.8
TAR636G2793 Trochodendron aralioides HOM05D003644 ORTHO05D004305 3.1e-27 125.9 206 44.2
Atru.chr7.1390 Acer truncatum HOM05D003644 ORTHO05D004305 4.0e-27 125.6 215 44.2
ClCG06G008860 Citrullus lanatus HOM05D003644 ORTHO05D004305 5.2e-27 125.2 208 50.0
Nn2g11654 Nelumbo nucifera HOM05D003644 ORTHO05D004305 6.9e-27 124.8 213 42.3
Glyma.09G193400 Glycine max HOM05D003644 ORTHO05D004305 1.2e-26 124.0 194 44.8
MELO3C004570.2 Cucumis melo HOM05D003644 ORTHO05D004305 2.6e-26 122.9 173 46.2
MELO3C024703.2 Cucumis melo HOM05D003644 ORTHO05D004305 3.4e-26 122.5 203 46.3
Gorai.001G007300 Gossypium raimondii HOM05D003644 ORTHO05D004305 3.4e-26 122.5 205 44.4
TWI32G0193 Tripterygium wilfordii HOM05D003644 ORTHO05D004305 3.4e-26 122.5 207 46.9
Gohir.A06G064800 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.4e-26 122.1 202 48.0
Sed0019018 Sechium edule HOM05D003644 ORTHO05D004305 4.4e-26 122.1 203 42.4
Lj2g0017641 Lotus japonicus HOM05D003644 ORTHO05D004305 5.8e-26 121.7 202 44.6
Oeu015581.1 Olea europaea HOM05D003644 ORTHO05D004305 5.8e-26 121.7 201 41.3
Peaxi162Scf00665g00003 Petunia axillaris HOM05D003644 ORTHO05D004305 9.9e-26 120.9 204 44.6
Medtr6g088280 Medicago truncatula HOM05D003644 ORTHO05D004305 2.2e-25 119.8 201 44.8
CsaV3_2G002110 Cucumis sativus L. HOM05D003644 ORTHO05D004305 2.9e-25 119.4 215 41.4
FAN23G2152 Fragaria x ananassa HOM05D003644 ORTHO05D004305 2.9e-25 119.4 223 43.5
ClCG11G002330 Citrullus lanatus HOM05D003644 ORTHO05D004305 3.8e-25 119.0 209 41.6
CsaV3_1G021830 Cucumis sativus L. HOM05D003644 ORTHO05D004305 3.8e-25 119.0 203 44.8
MD15G1192000 Malus domestica HOM05D003644 ORTHO05D004305 6.4e-25 118.2 217 43.8
Gohir.D05G026700 Gossypium hirsutum HOM05D003644 ORTHO05D004305 1.1e-24 117.5 211 45.5
AL7G23640 Arabidopsis lyrata HOM05D003644 ORTHO05D004305 1.9e-24 116.7 116 59.5
CSS0008241 Camellia sinensis var. sinensis HOM05D003644 ORTHO05D004305 3.2e-24 115.9 209 41.1
Gohir.A05G025200 Gossypium hirsutum HOM05D003644 ORTHO05D004305 4.2e-24 115.5 207 44.0
Gohir.D07G007600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 5.4e-24 115.2 201 44.8
TPR.G34913 Trifolium pratense HOM05D003644 ORTHO05D004305 5.4e-24 115.2 211 42.2
Gohir.A07G004600 Gossypium hirsutum HOM05D003644 ORTHO05D004305 9.3e-24 114.4 172 46.5
Gorai.009G026800 Gossypium raimondii HOM05D003644 ORTHO05D004305 9.3e-24 114.4 220 43.6
Psat1g044920 Pisum sativum HOM05D003644 ORTHO05D004305 9.3e-24 114.4 200 44.5
DCAR_012057 Daucus carota HOM05D003644 ORTHO05D004305 1.2e-23 114.0 213 41.8
Sed0013314 Sechium edule HOM05D003644 ORTHO05D004305 1.6e-23 113.6 204 43.6
AUR62010940 Chenopodium quinoa HOM05D003644 ORTHO05D004305 4.6e-23 112.1 207 40.6
COL.COLO4_34805 Corchorus olitorius HOM05D003644 ORTHO05D004305 4.6e-23 112.1 192 47.4
MSTRG.6013 Avicennia marina HOM05D003644 ORTHO05D004305 7.8e-23 111.3 207 42.0
Phvul.004G168350 Phaseolus vulgaris HOM05D003644 ORTHO05D004305 3.9e-22 109.0 196 41.8
SalBow6G0047 Salvia bowleyana HOM05D003644 ORTHO05D004305 3.9e-22 109.0 203 42.9
arahy.Tifrunner.gnm1.ann1.TDG8V6 Arachis hypogaea HOM05D003644 ORTHO05D004305 8.7e-22 107.8 217 41.5
Dinv41640 Davidia involucrata HOM05D003644 ORTHO05D004305 2.5e-21 106.3 165 41.2
PGSC0003DMG400003139 Solanum tuberosum HOM05D003644 ORTHO05D004305 2.5e-21 106.3 200 40.0
PGSC0003DMG400000374 Solanum tuberosum HOM05D003644 ORTHO05D004305 4.3e-21 105.5 203 45.8
PSO566G0277 Papaver somniferum HOM05D003644 ORTHO05D004305 9.6e-21 104.4 205 41.0
BcaB03g16801 Brassica carinata HOM05D003644 ORTHO05D004305 1.3e-20 104.0 55 87.3
Sopen12g003210 Solanum pennellii HOM05D003644 ORTHO05D004305 1.6e-20 103.6 203 45.8
PSO782G2161 Papaver somniferum HOM05D003644 ORTHO05D004305 4.8e-20 102.1 205 41.0
Glyma.01G145600 Glycine max HOM05D003644 ORTHO05D004305 6.2e-20 101.7 199 41.2
VMungo0464G0020 Vigna mungo HOM05D003644 ORTHO05D004305 1.1e-19 100.9 201 41.8
ECA234G2378 Erigeron canadensis HOM05D003644 ORTHO05D004305 1.8e-19 100.1 183 41.5
Peaxi162Scf00231g00061 Petunia axillaris HOM05D003644 ORTHO05D004305 2.4e-19 99.8 205 41.5
CAN.G1774.6 Capsicum annuum HOM05D003644 ORTHO05D004305 3.1e-19 99.4 168 45.2
RcHm_v2.0_Chr2g0091291 Rosa chinensis HOM05D003644 ORTHO05D004305 9.0e-19 97.8 169 45.0
Sed0028016 Sechium edule HOM05D003644 ORTHO05D004305 9.0e-19 97.8 203 36.0
arahy.Tifrunner.gnm1.ann1.XM0XDL Arachis hypogaea HOM05D003644 ORTHO05D004305 1.5e-18 97.1 226 43.4
Lalb_Chr16g0388081 Lupinus albus HOM05D003644 ORTHO05D004305 2.0e-18 96.7 120 48.3
Hma1.2p1_0945F.1_g240090 Hydrangea macrophylla HOM05D003644 ORTHO05D004305 2.6e-18 96.3 192 41.1
Cc06_g10070 Coffea canephora HOM05D003644 ORTHO05D004305 3.4e-18 95.9 208 37.0
Sopen07g007520 Solanum pennellii HOM05D003644 ORTHO05D004305 3.4e-18 95.9 200 38.0
Aqoxy7G01525 Aquilegia oxysepala HOM05D003644 ORTHO05D004305 4.5e-18 95.5 169 37.9
CARHR236630 Cardamine hirsuta HOM05D003644 ORTHO05D004305 7.6e-18 94.7 70 84.3
Hund09226 Selenicereus undatus HOM05D003644 ORTHO05D004305 7.6e-18 94.7 191 40.3
arahy.Tifrunner.gnm1.ann1.X7P2RE Arachis hypogaea HOM05D003644 ORTHO05D004305 3.8e-17 92.4 148 44.6
Lalb_Chr22g0352641 Lupinus albus HOM05D003644 ORTHO05D004305 4.9e-17 92.0 212 41.5
Oeu002262.2 Olea europaea HOM05D003644 ORTHO05D004305 4.9e-17 92.0 137 46.0
Hund09225 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.4e-17 91.3 212 41.0
Hund26238 Selenicereus undatus HOM05D003644 ORTHO05D004305 8.4e-17 91.3 202 37.6
HanXRQChr14g0449921 Helianthus annuus HOM05D003644 ORTHO05D004305 9.3e-16 87.8 158 39.2
Lsat_1_v5_gn_8_96040 Lactuca sativa HOM05D003644 ORTHO05D004305 9.3e-16 87.8 128 43.8
EL10Ac8g18428 Beta vulgaris HOM05D003644 ORTHO05D004305 1.6e-15 87.0 203 37.4
DCAR_010477 Daucus carota HOM05D003644 ORTHO05D004305 2.1e-15 86.7 191 36.1
Migut.K00491 Erythranthe guttata HOM05D003644 ORTHO05D004305 3.5e-15 85.9 163 38.7
HanXRQChr12g0358181 Helianthus annuus HOM05D003644 ORTHO05D004305 2.3e-14 83.2 159 40.3
MSTRG.19571 Avicennia marina HOM05D003644 ORTHO05D004305 3.9e-14 82.4 168 38.1
COL.COLO4_17464 Corchorus olitorius HOM05D003644 ORTHO05D004305 6.7e-14 81.6 144 40.3
Sc08g0007690 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.1e-13 80.9 185 40.0
Sc18g0001380 Simmondsia chinensis HOM05D003644 ORTHO05D004305 1.9e-13 80.1 197 36.5
Lalb_Chr05g0223051 Lupinus albus HOM05D003644 ORTHO05D004305 2.5e-13 79.7 139 44.6
PGR102G0050 Punica granatum HOM05D003644 ORTHO05D004305 1.3e-12 77.4 211 41.7
Actinidia32668 Actinidia chinensis HOM05D003644 ORTHO05D004305 1.6e-12 77.0 132 43.2
Actinidia09436 Actinidia chinensis HOM05D003644 ORTHO05D004305 3.6e-12 75.9 158 39.2
Eucgr.C01280 Eucalyptus grandis HOM05D003644 ORTHO05D004305 8.1e-12 74.7 202 35.6
TPR.G23503 Trifolium pratense HOM05D003644 ORTHO05D004305 5.3e-11 72.0 148 37.8
arahy.Tifrunner.gnm1.ann1.R9ZCFD Arachis hypogaea HOM05D003644 ORTHO05D004305 9.0e-11 71.2 177 41.8
Actinidia20403 Actinidia chinensis HOM05D003644 ORTHO05D004305 4.5e-10 68.9 153 39.9
Oeu018442.1 Olea europaea HOM05D003644 ORTHO05D004305 9.9e-10 67.8 73 57.5
HPP92_019983 Vanilla planifolia HOM05D003644 ORTHO05D004305 1.3e-09 67.4 190 35.8
Solyc12g007240.3 Solanum lycopersicum HOM05D003644 ORTHO05D004305 6.4e-09 65.1 143 40.6
Os05g0559316 Oryza sativa ssp. japonica HOM05D003644 ORTHO05D004305 1.1e-08 64.3 92 43.5
Nitab4.5_0014820g0010 Nicotiana tabacum HOM05D003644 ORTHO05D004305 1.4e-08 63.9 148 39.2
Rhsim05G0043500 Rhododendron simsii HOM05D003644 ORTHO05D004305 3.2e-08 62.8 203 32.0
unitig_578.g15927 Utricularia gibba HOM05D003644 ORTHO05D004305 1.6e-07 60.5 88 42.0
Zm00001eb156860 Zea mays HOM05D003644 ORTHO05D004305 2.7e-07 59.7 178 35.4
Zm00001eb360290 Zea mays HOM05D003644 ORTHO05D004305 3.5e-07 59.3 180 33.9
Lsat_1_v5_gn_5_147641 Lactuca sativa HOM05D003644 ORTHO05D004305 6.0e-07 58.5 93 40.9
Ah.09g230900 Amaranthus hybridus HOM05D003644 ORTHO05D004305 3.9e-06 55.8 200 30.0


User provided reference genes

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