Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 0.0e+00 1196.0 603 100.0
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 0.0e+00 1107.0 605 92.7
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 7.0e-294 1013.4 604 85.1
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 2.5e-291 1005.0 604 82.9
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 5.5e-291 1003.8 604 82.9
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 5.5e-291 1003.8 604 82.9
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 6.8e-289 996.9 606 82.7
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 2.2e-287 991.9 604 82.5
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 2.8e-287 991.5 607 82.2
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 8.1e-258 893.6 603 75.6
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 5.4e-238 827.8 478 88.7
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 3.8e-231 805.1 478 85.4
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 1.9e-227 792.7 604 67.7
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 9.4e-174 614.4 611 55.8
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 3.6e-173 612.5 611 55.5
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 6.8e-172 608.2 610 54.9
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 4.7e-165 585.5 608 51.6
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 4.0e-164 582.4 608 53.1
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 3.4e-163 579.3 611 52.9
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 1.7e-162 577.0 614 52.8
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.6e-160 570.5 611 52.7
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 2.0e-160 570.1 608 50.3
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 1.4e-156 557.4 611 52.0
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 3.2e-153 546.2 606 51.5
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 2.7e-152 543.1 605 49.3
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 1.0e-151 541.2 629 48.8
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 3.9e-151 539.3 617 48.6
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 4.7e-149 532.3 610 48.5
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 6.2e-149 531.9 585 52.8
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 1.5e-147 527.3 612 49.3
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 1.3e-146 524.2 610 49.2
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 1.4e-145 520.8 611 48.9
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 2.1e-144 516.9 657 46.4
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 1.9e-142 510.4 612 47.9
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 4.3e-142 509.2 607 47.9
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 7.3e-142 508.4 608 48.0
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 8.1e-141 505.0 627 46.6
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 8.9e-140 501.5 523 53.2
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 3.4e-139 499.6 616 47.7
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 9.9e-139 498.0 614 46.9
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 4.9e-138 495.7 606 48.2
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 2.4e-137 493.4 623 45.4
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 3.2e-137 493.0 613 48.5
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 1.6e-136 490.7 571 47.8
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 2.7e-136 490.0 627 46.7
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 1.3e-135 487.6 637 46.0
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 3.0e-135 486.5 614 47.1
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.9e-134 483.8 622 44.9
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 1.2e-133 481.1 625 46.6
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 2.8e-133 479.9 607 47.8
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 2.8e-133 479.9 625 46.6
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 1.2e-131 474.6 629 44.2
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 1.5e-131 474.2 623 44.8
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 2.0e-131 473.8 610 46.1
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 2.6e-131 473.4 640 43.4
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.3e-130 471.1 631 46.0
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 2.9e-130 469.9 271 88.2
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 1.1e-129 468.0 631 45.3
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 3.2e-129 466.5 689 44.1
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 7.1e-129 465.3 618 45.5
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 1.2e-128 464.5 618 45.3
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 1.6e-128 464.2 623 44.5
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 7.8e-128 461.8 622 44.2
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 1.3e-127 461.1 618 46.0
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 3.0e-127 459.9 629 44.0
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 2.1e-125 453.8 630 42.7
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 3.6e-125 453.0 479 54.1
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 4.8e-125 452.6 629 44.0
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 4.4e-123 446.0 658 41.6
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 1.9e-121 440.7 640 43.0
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 5.4e-121 439.1 647 42.8
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 6.6e-119 432.2 623 42.4
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 6.6e-119 432.2 611 41.2
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 4.3e-118 429.5 715 38.9
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 7.4e-110 402.1 606 41.9
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 1.4e-108 397.9 620 40.2
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 6.7e-103 379.0 612 39.4
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 3.0e-95 353.6 658 38.0
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 7.7e-91 339.0 476 43.1
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 6.5e-90 335.9 396 50.3
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 1.1e-86 325.1 363 51.0
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 1.4e-81 308.1 393 47.3
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 2.5e-81 307.4 406 46.1
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 7.4e-78 295.8 330 50.3
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 2.0e-75 287.7 318 52.2
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 5.9e-75 286.2 292 51.7
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 5.3e-68 263.1 279 53.0
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 6.5e-66 256.1 321 48.0
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 1.5e-57 228.4 279 49.1
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 2.9e-50 204.1 226 50.9
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 1.2e-48 198.7 323 39.3
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 1.2e-48 198.7 231 49.4
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 2.3e-47 194.5 676 26.6
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 2.3e-42 177.9 226 46.0
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 5.6e-41 173.3 101 83.2
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 3.4e-38 164.1 615 27.5
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 7.0e-36 156.4 274 39.1
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 9.2e-36 156.0 264 39.4
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 1.2e-35 155.6 424 31.6
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 2.8e-32 144.4 289 31.8
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 6.4e-29 133.3 435 27.6
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 5.6e-25 120.2 123 48.0
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 2.1e-24 118.2 192 39.6
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 2.8e-24 117.9 159 37.1
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 1.1e-23 115.9 118 47.5
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 2.3e-23 114.8 113 46.0
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 6.8e-23 113.2 144 45.1
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 1.5e-22 112.1 152 48.7
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 2.0e-22 111.7 118 44.9
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 4.4e-22 110.5 537 25.5
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 4.4e-22 110.5 136 47.8
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 3.0e-18 97.8 152 40.8
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 6.6e-18 96.7 138 43.5
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 5.6e-17 93.6 125 44.8
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 6.8e-15 86.7 341 28.7
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 6.8e-15 86.7 194 33.5
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 1.2e-11 75.9 124 40.3
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 2.8e-08 64.7 114 37.7
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 9.0e-07 59.7 81 42.0


User provided reference genes

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