Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 1.3e-140 503.1 253 100.0
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 7.1e-139 497.3 253 98.8
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 2.3e-137 492.3 253 96.8
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 3.9e-137 491.5 253 96.8
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 5.1e-137 491.1 253 96.8
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 8.6e-137 490.3 253 95.3
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 8.6e-137 490.3 253 96.4
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 1.9e-136 489.2 252 96.8
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 4.1e-131 471.5 255 91.8
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 4.1e-131 471.5 256 91.4
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 4.6e-130 468.0 239 95.0
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 6.6e-129 464.2 253 90.5
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 2.5e-128 462.2 253 90.5
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.1e-126 456.8 254 88.2
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 4.0e-126 454.9 253 87.4
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 8.9e-126 453.8 254 86.6
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 8.9e-126 453.8 254 86.6
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 5.8e-125 451.1 253 86.2
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 5.8e-125 451.1 253 87.4
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 7.6e-125 450.7 253 87.4
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 1.3e-124 449.9 253 85.8
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 2.9e-124 448.7 252 85.7
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 3.8e-124 448.4 231 96.5
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 3.8e-124 448.4 231 96.5
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 8.4e-124 447.2 253 84.6
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 1.4e-123 446.4 225 97.3
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 1.4e-123 446.4 253 85.4
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 2.4e-123 445.7 254 86.6
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 2.4e-123 445.7 253 84.6
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.2e-123 445.3 253 84.6
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 3.2e-123 445.3 253 83.4
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 4.2e-123 444.9 252 84.9
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 9.3e-123 443.7 254 84.6
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 2.7e-122 442.2 253 85.0
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 4.6e-122 441.4 255 86.3
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 1.0e-121 440.3 253 85.0
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 1.3e-121 439.9 250 89.2
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 1.7e-121 439.5 254 84.3
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 2.3e-121 439.1 253 84.6
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 2.3e-121 439.1 252 83.7
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 3.9e-121 438.3 253 83.8
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 3.9e-121 438.3 254 84.3
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 6.6e-121 437.6 250 84.4
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 6.6e-121 437.6 250 84.4
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 1.1e-120 436.8 255 82.7
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 1.1e-120 436.8 255 82.7
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 2.5e-120 435.6 253 83.8
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 2.5e-120 435.6 253 83.0
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 3.3e-120 435.3 254 87.8
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 9.6e-120 433.7 256 81.6
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 9.6e-120 433.7 257 83.3
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 3.6e-119 431.8 253 81.8
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 1.1e-118 430.3 256 81.2
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 2.4e-118 429.1 254 83.1
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 4.0e-118 428.3 253 81.0
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 4.0e-118 428.3 253 81.4
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 6.9e-118 427.6 253 81.4
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 6.9e-118 427.6 275 78.2
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 1.5e-117 426.4 258 81.4
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 1.5e-117 426.4 249 83.1
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 1.5e-117 426.4 249 82.3
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 2.6e-117 425.6 253 81.4
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 2.6e-117 425.6 255 83.1
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 5.8e-117 424.5 254 79.9
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 1.3e-116 423.3 257 81.3
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 1.7e-116 422.9 262 81.3
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.7e-116 422.9 254 80.7
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.7e-116 422.9 249 81.5
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 2.2e-116 422.5 258 81.4
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 2.2e-116 422.5 254 80.3
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 4.9e-116 421.4 254 80.3
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 4.9e-116 421.4 257 80.9
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 6.4e-116 421.0 259 79.2
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 1.4e-115 419.9 250 80.8
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 2.4e-115 419.1 254 79.9
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 3.2e-115 418.7 253 79.4
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 7.1e-115 417.5 256 80.9
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 7.1e-115 417.5 249 79.5
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 2.1e-114 416.0 256 80.5
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 4.6e-114 414.8 280 73.6
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 1.3e-113 413.3 281 74.0
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 2.3e-113 412.5 255 85.9
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 5.1e-113 411.4 249 78.7
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 5.6e-112 407.9 294 70.7
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 6.9e-110 401.0 250 76.0
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 9.0e-110 400.6 250 76.8
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 2.0e-109 399.4 248 76.6
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 8.4e-108 394.0 250 75.2
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.6e-106 389.8 252 77.0
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 3.7e-103 378.6 253 75.1
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 1.4e-102 376.7 251 78.1
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 1.4e-102 376.7 248 74.2
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 9.0e-102 374.0 254 75.2
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 9.0e-102 374.0 222 79.7
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 2.6e-101 372.5 452 48.5
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 2.5e-99 365.9 199 89.9
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 3.5e-98 362.1 208 83.2
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 5.1e-97 358.2 249 70.3
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 1.6e-95 353.2 283 67.8
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 2.8e-95 352.4 257 71.6
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 3.7e-95 352.1 249 67.5
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 6.3e-95 351.3 248 72.2
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 9.0e-94 347.4 211 81.0
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 2.6e-93 345.9 249 67.1
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 4.2e-91 338.6 249 65.5
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 1.5e-88 330.1 194 81.4
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 3.3e-88 328.9 249 65.5
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 5.7e-88 328.2 248 68.1
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 2.8e-87 325.9 253 67.2
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.4e-86 323.6 208 74.0
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 7.7e-85 317.8 236 65.3
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.9e-84 315.8 241 67.6
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 3.6e-82 308.9 268 62.3
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 6.7e-81 304.7 206 75.7
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.9e-76 289.3 270 57.4
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 5.0e-76 288.5 249 57.8
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 8.5e-76 287.7 336 52.4
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 6.1e-74 281.6 161 84.5
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 2.6e-72 276.2 253 61.7
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 1.3e-71 273.9 161 83.2
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 1.4e-70 270.4 241 53.1
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.8e-70 270.0 208 66.8
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 7.7e-69 264.6 207 65.7
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 5.5e-67 258.5 286 52.4
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 8.8e-65 251.1 228 52.2
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 2.8e-63 246.1 228 53.1
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.0e-61 240.0 145 82.8
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 1.0e-60 237.7 170 69.4
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 4.0e-57 225.7 159 71.7
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 2.0e-56 223.4 115 93.9
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 2.0e-56 223.4 206 56.8
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 1.9e-51 206.8 146 65.8
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 1.7e-44 183.7 112 75.0
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 1.6e-42 177.2 133 70.7
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 7.3e-35 151.8 91 74.7
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 5.8e-32 142.1 174 47.1
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 1.6e-29 134.0 93 67.7
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-28 131.3 102 66.7
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.0e-28 131.3 253 40.3
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 5.6e-11 72.4 52 65.4


User provided reference genes

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