Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 0.0e+00 1179.5 630 100.0
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 0.0e+00 1114.8 630 94.9
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 8.6e-303 1043.1 631 88.4
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 1.9e-302 1042.0 630 88.7
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 2.0e-299 1031.9 626 89.1
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 1.1e-289 999.6 659 82.5
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 6.2e-285 983.8 659 81.0
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 6.2e-285 983.8 659 81.0
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 1.5e-283 979.2 659 80.7
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 3.2e-281 971.5 684 78.2
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 6.6e-279 963.8 684 77.6
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.7e-250 869.4 630 76.8
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 5.0e-226 788.1 631 71.0
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 2.5e-217 759.2 481 84.8
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 7.3e-177 624.8 650 55.8
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 2.8e-176 622.9 640 54.8
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 3.1e-175 619.4 644 57.0
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 1.4e-172 610.5 644 54.3
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 4.1e-172 609.0 649 55.0
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 3.5e-171 605.9 651 54.4
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 7.8e-171 604.7 646 54.3
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 5.1e-170 602.1 653 55.4
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 1.2e-168 597.4 651 53.3
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.2e-166 590.9 667 51.7
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 2.0e-166 590.1 667 51.7
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 3.4e-166 589.3 644 52.8
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 5.8e-166 588.6 635 53.9
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 9.9e-166 587.8 647 53.3
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 1.7e-165 587.0 640 54.1
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 6.4e-165 585.1 635 53.1
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 9.3e-164 581.3 653 53.6
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 4.6e-163 578.9 639 53.4
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.3e-162 577.4 653 53.4
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.3e-162 577.4 653 53.3
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 5.1e-162 575.5 639 52.0
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 6.6e-162 575.1 648 51.4
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.1e-161 574.3 653 53.4
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 2.5e-161 573.2 648 51.9
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 9.6e-161 571.2 674 51.3
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 1.3e-160 570.9 653 51.6
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 6.9e-159 565.1 635 52.0
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 1.5e-158 563.9 605 53.2
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 4.4e-158 562.4 630 52.1
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.2e-157 560.1 699 49.5
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 2.2e-157 560.1 677 49.3
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 3.8e-157 559.3 639 51.0
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 1.2e-155 554.3 652 51.7
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 2.7e-155 553.1 647 51.6
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 3.5e-155 552.7 650 51.7
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 3.0e-154 549.7 639 50.9
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 6.6e-154 548.5 660 50.8
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 7.4e-153 545.0 639 49.8
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 4.5e-150 535.8 671 50.2
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 1.3e-149 534.3 640 51.1
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 2.2e-149 533.5 629 51.2
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 8.4e-149 531.6 627 50.2
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 5.5e-148 528.9 642 50.8
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.6e-147 527.3 638 49.2
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 2.7e-147 526.6 643 49.6
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 1.8e-146 523.9 657 49.2
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 1.8e-146 523.9 643 49.5
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 5.1e-146 522.3 781 43.9
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 6.7e-146 521.9 642 50.2
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 8.7e-146 521.5 642 49.8
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 4.3e-145 519.2 639 47.9
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 6.9e-143 511.9 651 49.0
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 4.5e-142 509.2 496 57.1
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.7e-141 507.3 636 49.8
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 2.9e-141 506.5 669 47.2
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 3.8e-141 506.1 594 51.9
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 1.8e-138 497.3 638 49.2
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 1.9e-137 493.8 756 43.7
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 2.5e-137 493.4 597 50.4
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 1.6e-136 490.7 679 47.4
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 7.6e-134 481.9 667 47.4
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 2.5e-132 476.9 622 49.2
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 3.0e-130 469.9 636 45.3
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 7.4e-129 465.3 618 47.4
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 7.7e-126 455.3 644 44.6
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 7.7e-126 455.3 450 57.1
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 1.0e-125 454.9 652 45.2
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 1.0e-125 454.9 502 52.4
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 1.2e-123 448.0 470 54.9
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 3.9e-122 443.0 649 43.3
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 4.3e-121 439.5 444 56.3
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 1.3e-120 438.0 587 46.5
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 2.2e-109 400.6 422 55.9
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 7.2e-108 395.6 633 43.4
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 2.7e-107 393.7 639 40.7
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.4e-106 391.3 660 39.4
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 4.0e-106 389.8 473 50.3
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 5.2e-106 389.4 696 37.5
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 7.7e-102 375.6 664 38.7
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 6.1e-99 365.9 510 45.3
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 2.2e-96 357.5 647 37.2
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 3.7e-96 356.7 668 36.5
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 1.1e-95 355.1 645 37.7
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 4.1e-95 353.2 639 39.4
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 4.2e-92 343.2 486 45.5
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 2.2e-88 330.9 448 45.8
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.1e-83 314.3 409 47.4
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.1e-68 265.4 216 65.3
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 1.1e-68 265.4 560 33.8
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 5.1e-61 240.0 838 28.8
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 3.5e-54 217.2 165 69.1
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 3.3e-52 210.7 753 30.0
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 3.1e-50 204.1 333 43.8
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 3.1e-50 204.1 208 55.8
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 2.2e-48 198.0 824 27.3
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 6.4e-48 196.4 261 48.7
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.4e-47 195.3 290 47.6
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 1.3e-45 188.7 153 65.4
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 7.3e-44 183.0 150 66.0
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 4.2e-31 140.6 210 41.4
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 3.0e-29 134.4 165 46.1
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 1.8e-26 125.2 316 31.6
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 7.1e-23 113.2 200 36.0
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 1.2e-22 112.5 101 58.4
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 1.3e-21 109.0 78 71.8
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 5.7e-20 103.6 94 62.8
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.1e-18 99.4 91 63.7
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 4.1e-18 97.4 90 64.4
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 4.8e-11 73.9 56 64.3
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 3.8e-08 64.3 46 67.4
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 8.5e-08 63.2 90 41.1
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 1.4e-07 62.4 50 70.0
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 9.4e-07 59.7 41 78.0
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.6e-06 58.9 83 44.6


User provided reference genes

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