Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 9.2e-89 330.1 156 100.0
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 5.4e-81 304.3 158 92.4
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 8.1e-77 290.4 154 88.3
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 3.1e-76 288.5 153 88.2
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 6.8e-76 287.3 153 87.6
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 8.9e-76 287.0 153 87.6
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 8.9e-76 287.0 153 87.6
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 7.6e-75 283.9 158 86.7
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 9.9e-75 283.5 161 84.5
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 2.2e-74 282.3 154 87.0
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 2.4e-73 278.9 153 85.6
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 2.4e-73 278.9 153 85.6
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 2.4e-73 278.9 153 85.6
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 7.1e-73 277.3 152 88.8
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 2.4e-65 252.3 159 76.1
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 1.0e-63 246.9 145 82.1
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 9.6e-62 240.4 144 76.4
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 8.1e-61 237.3 155 73.5
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 8.1e-61 237.3 149 75.2
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 1.1e-60 236.9 155 74.2
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 1.8e-60 236.1 155 73.5
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 3.1e-60 235.3 143 76.9
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 3.1e-60 235.3 155 71.6
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 6.9e-60 234.2 155 72.9
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 2.0e-59 232.6 156 72.4
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.6e-59 232.3 143 75.5
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 2.6e-59 232.3 155 72.3
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 5.8e-59 231.1 154 71.4
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 7.6e-59 230.7 156 71.8
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 9.9e-59 230.3 147 74.1
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 1.7e-58 229.6 149 73.8
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 2.9e-58 228.8 155 70.3
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 2.9e-58 228.8 145 72.4
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 6.4e-58 227.6 149 71.1
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 1.9e-57 226.1 144 74.3
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 2.4e-57 225.7 147 72.1
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 2.4e-57 225.7 154 72.1
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 3.2e-57 225.3 140 76.4
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 4.2e-57 224.9 156 69.9
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 9.3e-57 223.8 160 71.2
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 1.6e-56 223.0 146 72.6
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 2.1e-56 222.6 146 72.6
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 3.5e-56 221.9 157 68.8
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 4.6e-56 221.5 148 72.3
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 7.9e-56 220.7 151 69.5
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 1.0e-55 220.3 152 71.1
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 1.0e-55 220.3 140 74.3
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 2.3e-55 219.2 154 69.5
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 3.0e-55 218.8 147 72.1
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 3.0e-55 218.8 147 72.1
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 8.7e-55 217.2 147 71.4
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 8.7e-55 217.2 144 72.2
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 1.9e-54 216.1 155 65.2
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 2.5e-54 215.7 160 65.0
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 4.3e-54 214.9 154 68.2
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 5.6e-54 214.5 151 68.9
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 9.6e-54 213.8 132 75.8
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 9.6e-54 213.8 151 69.5
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.6e-53 213.0 142 72.5
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 1.6e-53 213.0 144 72.2
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 2.8e-53 212.2 158 67.7
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 4.8e-53 211.5 147 69.4
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 4.8e-53 211.5 146 70.5
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 8.1e-53 210.7 152 67.1
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 8.1e-53 210.7 153 63.4
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.1e-52 210.3 143 67.1
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 5.3e-52 208.0 153 66.0
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 6.9e-52 207.6 150 67.3
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 1.5e-51 206.5 145 67.6
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 1.5e-51 206.5 151 66.2
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 2.0e-51 206.1 147 66.0
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 3.4e-51 205.3 155 65.8
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 7.6e-51 204.1 139 68.3
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 1.3e-50 203.4 148 66.9
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 1.3e-50 203.4 141 69.5
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 2.2e-50 202.6 144 67.4
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 6.4e-50 201.1 143 69.9
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 8.4e-50 200.7 143 69.2
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 1.2e-48 196.8 138 68.8
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 1.2e-48 196.8 140 67.9
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 7.9e-48 194.1 147 63.9
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 1.9e-46 189.5 160 63.1
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 2.5e-46 189.1 140 67.1
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 2.5e-46 189.1 142 67.6
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 2.8e-45 185.7 154 62.3
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 3.7e-45 185.3 147 59.2
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 3.7e-45 185.3 147 59.2
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 6.9e-44 181.0 138 64.5
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 1.2e-43 180.3 135 60.7
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 4.6e-40 168.3 139 59.7
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 1.1e-38 163.7 107 69.2
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 1.5e-38 163.3 158 53.2
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 1.3e-37 160.2 134 58.2
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 2.4e-36 156.0 152 52.6
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 2.4e-36 156.0 135 54.1
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 9.0e-36 154.1 119 63.0
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 1.5e-35 153.3 149 53.0
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 6.5e-34 147.9 134 55.2
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 8.5e-34 147.5 135 54.8
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 1.4e-33 146.7 134 53.0
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 7.9e-32 141.0 105 64.8
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 3.9e-31 138.7 144 50.7
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 5.1e-31 138.3 95 69.5
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 6.3e-29 131.3 101 62.4
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 1.4e-28 130.2 98 64.3
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 9.1e-28 127.5 146 46.6
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 2.7e-24 115.9 138 46.4
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 2.8e-21 105.9 81 67.9
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 2.6e-19 99.4 103 51.5
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 6.5e-18 94.7 164 36.6
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 1.2e-16 90.5 157 35.7
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 6.7e-15 84.7 74 58.1
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 3.2e-09 65.9 104 36.5
Cfa026913 Carpinus fangiana HOM05D001568 ORTHO05D009161 5.7e-06 55.1 178 27.5


User provided reference genes

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