Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 4.9e-123 444.5 230 100.0
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 4.0e-80 302.0 229 74.2
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 2.2e-78 296.2 231 72.7
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 4.2e-74 282.0 223 70.9
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 2.7e-68 262.7 237 66.2
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 4.4e-63 245.4 236 63.1
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.1e-61 240.7 235 63.0
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.8e-61 240.0 235 63.4
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 8.6e-59 231.1 190 70.0
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.1e-53 214.2 206 61.2
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 1.4e-53 213.8 230 56.1
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.4e-53 213.0 218 59.2
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.3e-51 206.5 231 56.3
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 7.3e-50 201.4 233 55.4
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 7.3e-50 201.4 233 55.4
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.5e-47 193.7 239 51.0
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 3.4e-47 192.6 200 57.0
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 4.4e-47 192.2 200 57.0
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 5.8e-47 191.8 195 55.4
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 2.2e-46 189.9 167 68.3
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.2e-46 189.9 230 52.6
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 2.9e-46 189.5 210 56.2
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 3.7e-46 189.1 195 54.9
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 8.3e-46 188.0 200 56.5
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 7.0e-45 184.9 223 52.9
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 9.2e-45 184.5 209 54.1
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 9.2e-45 184.5 210 54.8
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 1.2e-44 184.1 214 51.4
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.2e-44 184.1 196 57.7
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 7.8e-44 181.4 211 50.7
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 1.0e-43 181.0 171 64.9
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.0e-43 181.0 194 53.6
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 1.7e-43 180.3 232 50.4
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 2.3e-43 179.9 202 57.4
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 3.9e-43 179.1 227 50.2
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 5.1e-43 178.7 230 50.0
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 5.1e-43 178.7 227 50.7
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 6.6e-43 178.3 195 52.3
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 6.6e-43 178.3 236 49.6
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.5e-42 177.2 186 55.9
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 2.5e-42 176.4 210 51.0
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 2.5e-42 176.4 238 47.5
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 3.3e-42 176.0 230 48.3
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 3.3e-42 176.0 210 52.9
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 3.3e-42 176.0 221 46.6
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 4.3e-42 175.6 215 48.8
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 5.6e-42 175.3 254 47.2
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.2e-41 174.1 216 51.4
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.2e-41 174.1 205 49.3
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.2e-41 174.1 236 47.9
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-41 173.3 236 51.7
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 3.6e-41 172.6 192 55.7
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 3.6e-41 172.6 192 55.7
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.6e-41 172.6 227 48.0
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 4.7e-41 172.2 280 41.8
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 4.7e-41 172.2 220 50.5
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 6.2e-41 171.8 235 48.5
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.1e-40 171.0 227 48.0
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.1e-40 171.0 227 48.0
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.1e-40 171.0 232 48.7
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.4e-40 170.6 209 50.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.8e-40 170.2 170 59.4
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.3e-40 169.9 221 46.2
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 2.3e-40 169.9 227 48.9
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 3.1e-40 169.5 196 51.0
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 4.0e-40 169.1 207 50.7
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 5.2e-40 168.7 263 44.5
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 5.2e-40 168.7 219 51.6
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 6.8e-40 168.3 209 46.9
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.2e-39 167.5 259 44.4
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.5e-39 167.2 236 48.3
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 2.0e-39 166.8 208 50.0
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 3.4e-39 166.0 199 51.8
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 5.8e-39 165.2 232 47.0
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 7.5e-39 164.9 209 48.3
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 9.9e-39 164.5 197 50.3
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 9.9e-39 164.5 224 46.9
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 9.9e-39 164.5 268 43.7
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 1.3e-38 164.1 204 47.1
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 2.2e-38 163.3 207 47.3
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 2.9e-38 162.9 263 44.5
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 2.9e-38 162.9 155 63.9
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 2.9e-38 162.9 269 42.0
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 2.9e-38 162.9 212 47.2
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 3.7e-38 162.5 208 48.6
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 4.9e-38 162.2 263 44.1
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.9e-37 160.2 242 44.2
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 2.4e-37 159.8 211 47.4
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 2.4e-37 159.8 225 46.7
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 2.4e-37 159.8 200 51.0
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 3.2e-37 159.5 241 44.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 3.2e-37 159.5 253 43.1
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 4.1e-37 159.1 229 45.4
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 7.1e-37 158.3 252 44.0
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 9.2e-37 157.9 189 53.4
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.6e-36 157.1 212 48.1
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.6e-36 157.1 209 47.8
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 4.6e-36 155.6 229 47.6
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 6.0e-36 155.2 209 47.8
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 1.7e-35 153.7 225 47.1
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 1.7e-35 153.7 240 44.2
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 5.1e-35 152.1 241 43.6
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 6.6e-35 151.8 240 42.1
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.5e-34 150.6 204 47.1
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-34 149.8 185 53.0
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 4.3e-34 149.1 174 54.0
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 7.3e-34 148.3 274 42.0
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.2e-33 147.5 232 43.5
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 2.8e-33 146.4 185 51.9
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 8.1e-33 144.8 248 44.0
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.4e-32 144.1 245 41.2
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.8e-32 143.7 185 50.8
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 4.0e-32 142.5 150 57.3
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 8.9e-32 141.4 211 43.6
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 8.9e-32 141.4 151 57.6
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 1.5e-31 140.6 149 56.4
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 2.0e-31 140.2 175 49.1
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 3.4e-31 139.4 245 40.0
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 6.4e-30 135.2 198 47.0
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 7.1e-29 131.7 253 41.1
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-28 131.0 140 58.6
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 2.7e-28 129.8 218 41.7
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 6.0e-28 128.6 199 45.2
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 3.9e-27 125.9 266 36.5
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 5.1e-27 125.6 229 38.9
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 5.1e-27 125.6 254 36.6
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 8.7e-27 124.8 198 42.4
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.1e-26 124.4 282 36.2
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 1.5e-26 124.0 264 39.4
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 2.5e-26 123.2 187 46.0
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 9.6e-26 121.3 233 39.9
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 8.1e-25 118.2 187 44.9
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 8.1e-25 118.2 181 40.9
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 1.5e-23 114.0 87 71.3
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 7.6e-23 111.7 232 38.4
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 4.9e-22 109.0 265 35.1
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 4.9e-22 109.0 265 35.1
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 4.9e-22 109.0 203 39.9
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 2.1e-20 103.6 147 44.9
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.7e-20 103.2 228 34.6
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 8.7e-19 98.2 58 84.5
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 8.7e-19 98.2 58 84.5
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 8.7e-19 98.2 58 84.5
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 8.7e-19 98.2 58 84.5
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 2.5e-18 96.7 63 76.2
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 2.5e-18 96.7 128 47.7
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 3.3e-18 96.3 56 85.7
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 3.3e-18 96.3 142 43.0
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 5.6e-18 95.5 84 66.7
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 7.3e-18 95.1 73 64.4
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 9.6e-18 94.7 147 45.6
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-18 94.7 56 83.9
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 9.6e-18 94.7 88 62.5
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 9.6e-18 94.7 56 83.9
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 1.3e-17 94.4 145 44.8
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 4.8e-17 92.4 118 51.7
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 6.2e-17 92.0 103 54.4
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 3.4e-15 86.3 168 40.5
A07p17600 Brassica napus HOM05D003513 ORTHO05D013524 4.5e-15 85.9 122 49.2
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 2.2e-14 83.6 54 75.9
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 2.9e-14 83.2 178 37.6
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.4e-13 80.9 175 36.0
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 1.9e-13 80.5 46 84.8
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 1.9e-13 80.5 46 84.8
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 4.2e-13 79.3 75 53.3
A03p63010 Brassica napus HOM05D003513 ORTHO05D013524 2.7e-12 76.6 120 44.2
C07p28040 Brassica napus HOM05D003513 ORTHO05D013524 2.7e-12 76.6 120 44.2
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 4.6e-12 75.9 133 38.3
A04p12810 Brassica napus HOM05D003513 ORTHO05D013524 6.0e-12 75.5 140 42.1
A06p18750 Brassica napus HOM05D003513 ORTHO05D013524 6.0e-12 75.5 140 42.1
BraA04t16944Z Brassica rapa HOM05D003513 ORTHO05D013524 6.0e-12 75.5 140 42.1
A06p48950 Brassica napus HOM05D003513 ORTHO05D013524 1.0e-11 74.7 92 50.0
BcaC09g52177 Brassica carinata HOM05D003513 ORTHO05D004660 1.5e-10 70.9 110 42.7
BraA05t21193Z Brassica rapa HOM05D003513 ORTHO05D004660 3.3e-10 69.7 75 56.0
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.6e-09 67.4 51 64.7
A08p11950 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-08 64.3 80 47.5
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 4.0e-08 62.8 51 62.7
BcaB02g08136 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-07 61.2 48 66.7
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 2.6e-07 60.1 50 62.0
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 2.6e-07 60.1 38 78.9
A09p57370 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-06 56.2 34 82.4
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 8.4e-06 55.1 127 31.5


User provided reference genes

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