Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 3.9e-218 761.1 372 100.0
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 3.1e-151 538.9 365 77.8
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 5.3e-151 538.1 365 77.5
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.5e-150 536.6 364 77.5
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.2e-149 532.7 365 76.4
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 3.8e-149 531.9 365 76.4
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 5.7e-145 518.1 365 74.2
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 5.7e-145 518.1 365 74.2
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.3e-144 516.9 363 74.7
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 8.2e-144 514.2 365 74.0
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 7.7e-142 507.7 365 73.4
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 2.0e-137 493.0 363 70.8
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 5.7e-137 491.5 363 70.5
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.3e-136 490.3 363 71.1
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 2.8e-136 489.2 363 70.2
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 3.7e-136 488.8 363 70.5
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 6.3e-136 488.0 363 70.2
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 6.3e-136 488.0 363 70.2
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 1.1e-135 487.3 363 70.2
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 1.1e-135 487.3 363 70.2
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.4e-135 486.1 363 71.1
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 2.4e-135 486.1 363 70.8
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 2.6e-134 482.6 364 69.8
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 3.8e-133 478.8 374 67.9
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 4.2e-132 475.3 375 68.5
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.9e-125 452.6 363 66.9
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 5.0e-125 451.8 365 66.3
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 1.1e-124 450.7 365 66.8
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 5.5e-124 448.4 363 65.8
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 7.2e-124 448.0 375 64.0
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 7.2e-124 448.0 363 66.1
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.2e-123 447.2 367 65.1
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.6e-123 446.8 361 66.2
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.6e-123 446.8 361 66.2
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 1.6e-123 446.8 361 66.2
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 2.1e-123 446.4 353 67.4
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 2.1e-123 446.4 367 65.4
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 2.7e-123 446.0 365 66.0
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 3.6e-123 445.7 367 65.1
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 6.1e-123 444.9 365 64.9
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 6.1e-123 444.9 363 65.0
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 8.0e-123 444.5 363 66.1
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.8e-122 443.4 367 64.9
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 2.3e-122 443.0 367 64.9
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 4.0e-122 442.2 363 65.3
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.2e-122 441.8 400 62.0
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.2e-122 441.8 366 65.6
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.2e-122 441.8 366 65.6
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 8.8e-122 441.0 363 65.0
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 1.5e-121 440.3 363 65.6
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.5e-121 440.3 368 64.7
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 1.5e-121 440.3 364 65.1
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.0e-121 439.9 363 65.0
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 2.6e-121 439.5 368 64.1
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 3.4e-121 439.1 366 65.0
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 3.4e-121 439.1 367 64.6
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 4.4e-121 438.7 368 63.3
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 4.4e-121 438.7 368 63.6
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 5.7e-121 438.3 366 65.3
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 5.7e-121 438.3 367 64.6
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 7.5e-121 438.0 368 63.6
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 9.8e-121 437.6 370 64.1
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 1.3e-120 437.2 371 63.1
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 1.3e-120 437.2 367 64.9
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.3e-120 437.2 368 64.1
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 1.3e-120 437.2 364 63.5
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.3e-120 437.2 364 63.5
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.2e-120 436.4 363 64.5
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 2.2e-120 436.4 368 64.1
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 2.8e-120 436.0 370 63.0
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 3.7e-120 435.6 365 64.4
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 3.7e-120 435.6 369 64.5
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 3.7e-120 435.6 366 64.2
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 4.8e-120 435.3 367 63.8
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 6.3e-120 434.9 370 64.1
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 6.3e-120 434.9 368 63.6
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 6.3e-120 434.9 366 63.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.4e-119 433.7 365 64.4
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 7.0e-119 431.4 365 64.4
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 1.6e-118 430.3 366 63.9
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 2.7e-118 429.5 366 63.7
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 3.5e-118 429.1 367 64.0
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 4.5e-118 428.7 401 59.1
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 5.9e-118 428.3 364 62.9
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 7.7e-118 427.9 368 63.6
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 1.0e-117 427.6 359 64.3
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 5.0e-117 425.2 369 61.5
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 5.0e-117 425.2 366 62.0
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 6.5e-117 424.9 365 62.7
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 6.5e-117 424.9 363 63.4
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 8.5e-117 424.5 369 62.3
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 1.1e-116 424.1 371 62.3
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.1e-116 424.1 360 63.3
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 1.5e-116 423.7 366 62.0
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 1.9e-116 423.3 367 61.9
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 1.2e-115 420.6 367 62.7
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 1.6e-115 420.2 369 61.5
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 2.1e-115 419.9 371 61.7
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 2.8e-115 419.5 402 59.2
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 2.3e-114 416.4 401 58.6
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 4.0e-114 415.6 366 61.2
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 4.0e-114 415.6 440 54.5
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 8.8e-114 414.5 379 60.9
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 1.2e-113 414.1 365 61.4
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 4.1e-111 405.6 355 62.8
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 5.4e-111 405.2 355 63.9
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 1.6e-110 403.7 428 54.0
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.7e-109 400.2 343 63.3
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 2.0e-105 386.7 402 56.0
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 7.5e-105 384.8 401 54.6
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.2e-102 377.5 435 51.0
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 2.3e-101 373.2 373 56.6
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 8.6e-101 371.3 296 68.2
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 1.6e-99 367.1 360 58.6
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 2.8e-99 366.3 374 52.7
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.8e-98 363.6 375 55.7
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 8.9e-98 361.3 341 58.1
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 3.4e-97 359.4 368 55.4
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 4.4e-97 359.0 290 65.5
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 2.2e-96 356.7 361 55.4
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 8.3e-96 354.8 334 58.4
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.2e-88 330.1 363 49.3
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 1.4e-87 327.4 368 49.2
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 3.2e-87 326.2 365 48.5
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.1e-75 287.0 164 90.2
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.5e-73 280.8 288 56.2
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.5e-70 269.6 183 74.3
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 3.9e-69 266.2 334 49.7
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 9.6e-68 261.5 278 53.2
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 3.4e-57 226.5 140 84.3
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 3.2e-55 219.9 339 41.9
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 7.1e-55 218.8 239 53.1
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 4.3e-52 209.5 290 44.5
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 9.6e-52 208.4 176 63.6
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.0e-48 198.4 185 55.1
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 6.5e-48 195.7 162 63.6
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 2.7e-38 163.7 158 58.9
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 1.1e-31 141.7 164 48.8
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 9.4e-31 138.7 128 60.2
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 2.7e-30 137.1 81 85.2
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 1.8e-29 134.4 71 91.5
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 4.2e-23 113.2 92 58.7
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 2.7e-22 110.5 59 86.4
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 2.6e-17 94.0 226 33.6
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 2.1e-14 84.3 46 71.7
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 4.7e-14 83.2 89 57.3
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.0e-13 82.0 46 71.7
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 4.0e-13 80.1 46 71.7
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 1.5e-07 61.6 49 67.3


User provided reference genes

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