Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G45790 Arabidopsis lyrata HOM05D007310 ORTHO05D002375 2.5e-122 442.2 233 100.0
AT2G14095 Arabidopsis thaliana HOM05D007310 ORTHO05D002375 2.3e-112 409.1 234 91.5
Carub.0003s2834 Capsella rubella HOM05D007310 ORTHO05D002375 7.0e-101 370.9 237 81.4
CARHR104210 Cardamine hirsuta HOM05D007310 ORTHO05D002375 1.3e-94 350.1 236 76.7
Sp3g27450 Schrenkiella parvula HOM05D007310 ORTHO05D002375 9.2e-85 317.4 234 74.4
BcaC01g03103 Brassica carinata HOM05D007310 ORTHO05D002375 2.8e-81 305.8 234 70.9
C03p56020 Brassica napus HOM05D007310 ORTHO05D002375 4.4e-79 298.5 235 70.2
BolC3t17888H Brassica oleracea HOM05D007310 ORTHO05D002375 4.4e-79 298.5 235 70.2
BraA03t13650Z Brassica rapa HOM05D007310 ORTHO05D002375 2.9e-78 295.8 234 69.7
A03p45150 Brassica napus HOM05D007310 ORTHO05D002375 1.1e-77 293.9 234 69.2
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 4.1e-77 292.0 235 68.5
Thhalv10022863m.g Eutrema salsugineum HOM05D007310 ORTHO05D002375 8.6e-75 284.3 189 75.7
THA.LOC104804411 Tarenaya hassleriana HOM05D007310 ORTHO05D002375 5.1e-35 152.1 217 45.2
Aa31LG8G12500 Aethionema arabicum HOM05D007310 ORTHO05D002375 1.9e-34 150.2 222 44.6
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 4.1e-24 115.9 164 37.8
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 6.9e-24 115.2 164 40.9
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 9.1e-24 114.8 164 37.2
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 4.5e-23 112.5 161 44.1
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 3.2e-21 106.3 124 41.9
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 4.2e-21 105.9 155 43.2
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 7.2e-21 105.1 129 43.4
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 9.4e-21 104.8 152 40.1
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 2.1e-20 103.6 192 37.0
SalBow8G1210 Salvia bowleyana HOM05D007310 ORTHO05D002375 2.7e-20 103.2 161 35.4
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 4.7e-20 102.4 154 40.3
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 6.1e-20 102.1 123 43.1
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 2.3e-19 100.1 151 39.7
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 3.9e-19 99.4 155 45.2
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 3.9e-19 99.4 130 42.3
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 5.2e-19 99.0 139 41.7
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 5.2e-19 99.0 155 34.8
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 6.7e-19 98.6 151 37.7
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 6.7e-19 98.6 138 42.0
RcHm_v2.0_Chr7g0236611 Rosa chinensis HOM05D007310 ORTHO05D002375 6.7e-19 98.6 169 35.5
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 8.8e-19 98.2 149 41.6
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 8.8e-19 98.2 130 42.3
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 1.1e-18 97.8 142 43.0
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 2.6e-18 96.7 230 31.3
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 4.4e-18 95.9 133 42.9
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 4.4e-18 95.9 129 41.9
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 4.4e-18 95.9 198 33.8
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 5.7e-18 95.5 170 35.9
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 7.4e-18 95.1 130 42.3
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 1.3e-17 94.4 149 38.3
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 6.3e-17 92.0 120 43.3
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 8.2e-17 91.7 141 37.6
GSVIVG01015685001 Vitis vinifera HOM05D007310 ORTHO05D002375 3.1e-16 89.7 171 36.8
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 4.1e-16 89.4 125 39.2
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 4.1e-16 89.4 210 33.8
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 5.3e-16 89.0 185 34.6
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 5.3e-16 89.0 163 34.4
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 5.3e-16 89.0 147 39.5
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 9.1e-16 88.2 130 36.9
Prupe.8G066300 Prunus persica HOM05D007310 ORTHO05D002375 9.1e-16 88.2 167 33.5
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 1.2e-15 87.8 129 39.5
Nitab4.5_0000863g0020 Nicotiana tabacum HOM05D007310 ORTHO05D002375 1.6e-15 87.4 134 38.8
Oeu022081.1 Olea europaea HOM05D007310 ORTHO05D002375 1.6e-15 87.4 129 38.0
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 2.0e-15 87.0 130 37.7
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 2.0e-15 87.0 138 40.6
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 3.5e-15 86.3 220 30.0
FAN15G0442 Fragaria x ananassa HOM05D007310 ORTHO05D002375 3.5e-15 86.3 154 32.5
HanXRQChr10g0290991 Helianthus annuus HOM05D007310 ORTHO05D002375 7.7e-15 85.1 137 37.2
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 1.7e-14 84.0 131 37.4
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 1.7e-14 84.0 173 34.7
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 1.7e-14 84.0 135 40.0
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 3.8e-14 82.8 146 34.9
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 5.0e-14 82.4 157 37.6
Lj4g0014623 Lotus japonicus HOM05D007310 ORTHO05D002375 6.5e-14 82.0 160 36.9
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 8.5e-14 81.6 136 39.7
Sabra17G0036600 Salix brachista HOM05D007310 ORTHO05D002375 1.1e-13 81.3 96 43.8
Sabra17G0042000 Salix brachista HOM05D007310 ORTHO05D002375 1.1e-13 81.3 96 44.8
Gohir.D02G199400 Gossypium hirsutum HOM05D007310 ORTHO05D002375 1.5e-13 80.9 124 40.3
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 1.9e-13 80.5 125 37.6
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 2.5e-13 80.1 192 33.9
MD05G1054900 Malus domestica HOM05D007310 ORTHO05D002375 4.2e-13 79.3 115 37.4
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 7.2e-13 78.6 118 39.0
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 7.2e-13 78.6 137 39.4
ECA234G2182 Erigeron canadensis HOM05D007310 ORTHO05D002375 9.4e-13 78.2 129 37.2
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 3.6e-12 76.3 117 35.9
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 4.7e-12 75.9 144 31.9
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 6.1e-12 75.5 99 41.4
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 8.0e-12 75.1 163 31.9
Glyma.08G070200 Glycine max HOM05D007310 ORTHO05D002375 4.0e-11 72.8 149 36.2
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 5.2e-11 72.4 119 33.6
Gorai.005G224000 Gossypium raimondii HOM05D007310 ORTHO05D002375 2.6e-10 70.1 205 28.8
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 3.3e-10 69.7 119 35.3
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 4.4e-10 69.3 130 36.2
Duzib132G0922 Durio zibethinus HOM05D007310 ORTHO05D002375 5.7e-10 68.9 163 34.4
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 5.7e-10 68.9 119 37.8
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.7e-09 67.4 119 36.1
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 2.8e-09 66.6 129 31.0
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 2.8e-09 66.6 140 32.9
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 2.8e-09 66.6 161 34.2
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 1.8e-08 63.9 117 32.5
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 2.7e-07 60.1 120 32.5
Peaxi162Scf00044g01721 Petunia axillaris HOM05D019315 ORTHO05D002375 2.7e-07 60.1 173 28.9
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 3.5e-07 59.7 151 28.5
CSS0048944 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 5.9e-07 58.9 64 43.8
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 1.3e-06 57.8 100 30.0
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.7e-06 57.4 117 32.5
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 2.9e-06 56.6 159 32.1
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 6.5e-06 55.5 142 33.8


User provided reference genes

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