Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 2.2e-67 258.8 134 100.0
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 1.4e-56 223.0 134 89.6
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 1.0e-51 206.8 134 82.8
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 3.8e-51 204.9 134 81.3
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 1.9e-50 202.6 135 81.5
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 8.0e-49 197.2 135 80.7
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 8.0e-49 197.2 135 80.7
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 1.2e-47 193.4 130 80.8
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 5.7e-47 191.0 133 77.4
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 4.9e-46 188.0 130 80.0
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 6.3e-46 187.6 135 78.5
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 1.2e-41 173.3 136 73.5
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 6.8e-40 167.5 120 77.5
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 1.9e-34 149.4 119 68.1
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 4.3e-34 148.3 119 67.2
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 4.3e-34 148.3 122 65.6
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 7.3e-34 147.5 122 67.2
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 7.3e-34 147.5 122 67.2
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 7.3e-34 147.5 122 67.2
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 1.2e-33 146.7 124 64.5
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 1.2e-33 146.7 124 66.1
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 2.1e-33 146.0 129 64.3
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 2.1e-33 146.0 124 65.3
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 3.6e-33 145.2 119 65.5
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 4.7e-33 144.8 119 65.5
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 4.7e-33 144.8 114 66.7
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 4.7e-33 144.8 127 62.2
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 4.7e-33 144.8 127 62.2
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 4.7e-33 144.8 127 62.2
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 8.0e-33 144.1 124 65.3
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 8.0e-33 144.1 124 65.3
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 1.0e-32 143.7 121 66.9
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 1.8e-32 142.9 125 65.6
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 2.3e-32 142.5 120 65.0
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 5.2e-32 141.4 118 66.9
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 6.8e-32 141.0 126 62.7
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 1.2e-31 140.2 124 62.9
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 1.2e-31 140.2 124 62.9
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.5e-31 139.8 119 65.5
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 1.5e-31 139.8 122 63.9
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 2.6e-31 139.0 117 65.0
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 3.4e-31 138.7 128 61.7
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 3.4e-31 138.7 128 60.9
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 5.8e-31 137.9 121 65.3
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 7.5e-31 137.5 115 65.2
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 7.5e-31 137.5 122 63.1
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 7.5e-31 137.5 122 63.1
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 1.7e-30 136.3 122 63.9
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 2.2e-30 136.0 113 64.6
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 2.2e-30 136.0 113 65.5
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 2.2e-30 136.0 113 64.6
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 2.2e-30 136.0 125 64.0
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 2.9e-30 135.6 113 69.0
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 2.9e-30 135.6 120 60.8
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 8.3e-30 134.0 120 60.8
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 1.1e-29 133.7 124 59.7
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 1.1e-29 133.7 114 64.0
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 1.4e-29 133.3 122 60.7
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 3.2e-29 132.1 114 62.3
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 3.2e-29 132.1 120 59.2
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 5.4e-29 131.3 108 64.8
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 7.0e-29 131.0 114 62.3
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 1.2e-28 130.2 121 59.5
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 1.2e-28 130.2 110 64.5
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 1.6e-28 129.8 114 61.4
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 1.6e-28 129.8 122 60.7
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 1.6e-28 129.8 106 65.1
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 2.0e-28 129.4 118 61.0
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 2.7e-28 129.0 111 63.1
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 2.7e-28 129.0 113 59.3
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 3.5e-28 128.6 108 65.7
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 3.5e-28 128.6 117 61.5
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 6.0e-28 127.9 116 61.2
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 7.8e-28 127.5 119 56.3
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 1.3e-27 126.7 99 66.7
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 2.3e-27 125.9 122 55.7
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 2.3e-27 125.9 111 61.3
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 2.3e-27 125.9 111 61.3
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 3.9e-27 125.2 121 58.7
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 5.0e-27 124.8 111 62.2
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 5.0e-27 124.8 119 55.5
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 5.0e-27 124.8 100 63.0
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 8.6e-27 124.0 123 57.7
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 1.1e-26 123.6 112 60.7
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 1.5e-26 123.2 117 60.7
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 1.9e-26 122.9 123 54.5
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 9.5e-26 120.6 119 57.1
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 9.5e-26 120.6 119 54.6
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 9.5e-26 120.6 120 59.2
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 1.2e-25 120.2 120 56.7
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 1.6e-25 119.8 124 58.1
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 1.6e-25 119.8 120 56.7
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 3.6e-25 118.6 114 55.3
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 4.7e-25 118.2 93 65.6
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 6.2e-25 117.9 92 67.4
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.8e-24 116.3 93 67.7
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 3.1e-24 115.5 154 48.1
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 1.1e-21 107.1 125 53.6
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 1.4e-21 106.7 93 65.6
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 1.4e-21 106.7 93 65.6
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 1.6e-20 103.2 94 62.8
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 2.1e-20 102.8 114 53.5
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 2.7e-20 102.4 92 64.1
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 2.3e-19 99.4 91 58.2
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 3.3e-18 95.5 88 65.9
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 1.6e-17 93.2 93 50.5
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 2.8e-17 92.4 69 72.5
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 2.8e-17 92.4 90 63.3
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 1.4e-16 90.1 69 71.0
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 2.3e-16 89.4 69 69.6
BcaB04g18782 Brassica carinata HOM05D006721 ORTHO05D000476 1.2e-15 87.0 70 65.7
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 1.5e-15 86.7 76 57.9
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 2.0e-15 86.3 92 45.7
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 7.6e-15 84.3 94 52.1
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 7.6e-15 84.3 94 52.1
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 6.4e-14 81.3 69 60.9
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 1.1e-13 80.5 90 51.1
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 2.4e-13 79.3 93 48.4
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 3.2e-13 79.0 125 37.6
BolC5t30890H Brassica oleracea HOM05D000263 ORTHO05D028311 1.7e-11 73.2 44 79.5
C08p15110 Brassica napus HOM05D000263 ORTHO05D028311 2.3e-11 72.8 44 79.5
BolC8t49141H Brassica oleracea HOM05D000263 ORTHO05D028311 2.3e-11 72.8 44 79.5
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 3.0e-11 72.4 68 55.9
PRCOL_00003504 Prasinoderma coloniale HOM05D006721 ORTHO05D000476 2.5e-10 69.3 73 49.3
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 7.3e-10 67.8 95 42.1
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 2.1e-09 66.2 60 63.3
DCAR_030976 Daucus carota HOM05D006721 ORTHO05D000476 8.1e-09 64.3 60 58.3
BcaC06g35701 Brassica carinata HOM05D000809 ORTHO05D001196 1.8e-08 63.2 35 88.6
SHI31376 Sapria himalayana HOM05D006721 ORTHO05D000476 8.9e-08 60.8 41 70.7


User provided reference genes

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