Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G45690 Arabidopsis lyrata HOM05D005872 ORTHO05D080292 2.7e-189 665.2 350 100.0
AL5G45450 Arabidopsis lyrata HOM05D000121 ORTHO05D000102 5.7e-22 109.4 61 93.4
Carub.0005s2937 Capsella rubella HOM05D000121 ORTHO05D000102 8.3e-21 105.5 62 93.5
Sp5g00820 Schrenkiella parvula HOM05D000121 ORTHO05D000102 2.4e-20 104.0 61 88.5
AL1G17470 Arabidopsis lyrata HOM05D005872 ORTHO05D008133 3.1e-20 103.6 56 92.9
Sp1g06070 Schrenkiella parvula HOM05D005872 ORTHO05D008133 4.1e-20 103.2 56 91.1
Carub.0001s0662 Capsella rubella HOM05D005872 ORTHO05D008133 5.4e-20 102.8 56 92.9
CARHR007030 Cardamine hirsuta HOM05D005872 ORTHO05D008133 5.4e-20 102.8 56 91.1
Thhalv10008395m.g Eutrema salsugineum HOM05D005872 ORTHO05D008133 2.0e-19 100.9 56 89.3
AT1G07320 Arabidopsis thaliana HOM05D005872 ORTHO05D008133 1.0e-18 98.6 56 87.5
Aa31LG1G6580 Aethionema arabicum HOM05D005872 ORTHO05D008133 1.5e-17 94.7 56 85.7
A10p05890 Brassica napus HOM05D005872 ORTHO05D008133 9.5e-17 92.0 56 82.1
THA.LOC104826298 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 1.6e-16 91.3 65 69.2
THA.LOC104808420 Tarenaya hassleriana HOM05D005872 ORTHO05D008133 2.1e-16 90.9 56 76.8
BcaC07g42461 Brassica carinata HOM05D005872 ORTHO05D008133 2.8e-16 90.5 56 80.4
C05p05390 Brassica napus HOM05D005872 ORTHO05D008133 2.8e-16 90.5 56 80.4
BolC5t29311H Brassica oleracea HOM05D005872 ORTHO05D008133 2.8e-16 90.5 56 80.4
BraA10t42851Z Brassica rapa HOM05D005872 ORTHO05D008133 2.8e-16 90.5 56 80.4
BcaC07g40769 Brassica carinata HOM05D000121 ORTHO05D000102 1.4e-15 88.2 61 80.3
A09p54570 Brassica napus HOM05D000121 ORTHO05D000102 4.0e-15 86.7 61 78.7
C08p37470 Brassica napus HOM05D000121 ORTHO05D000102 4.0e-15 86.7 61 78.7
BolC8t51326H Brassica oleracea HOM05D000121 ORTHO05D000102 4.0e-15 86.7 61 78.7
BraA09t40869Z Brassica rapa HOM05D000121 ORTHO05D000102 4.0e-15 86.7 61 78.7
AL5G26560 Arabidopsis lyrata HOM05D003318 ORTHO05D079812 4.4e-14 83.2 42 97.6
AL6G44250 Arabidopsis lyrata HOM05D003414 ORTHO05D008133 5.4e-12 76.3 39 100.0
AL7G35160 Arabidopsis lyrata HOM05D002988 ORTHO05D003479 2.7e-11 73.9 69 63.8
AT3G62700 Arabidopsis thaliana HOM05D000121 ORTHO05D000102 1.7e-10 71.2 42 92.9
AT4G19000 Arabidopsis thaliana HOM05D002988 ORTHO05D003479 2.3e-10 70.9 69 65.2
CARHR172970 Cardamine hirsuta HOM05D000121 ORTHO05D000102 5.0e-10 69.7 61 67.2
Atru.chr3.4076 Acer truncatum HOM05D005872 ORTHO05D008133 8.6e-10 68.9 69 58.0
ClCG02G019690 Citrullus lanatus HOM05D005872 ORTHO05D008133 1.1e-09 68.6 65 52.3
ClCG06G015810 Citrullus lanatus HOM05D005872 ORTHO05D008133 1.1e-09 68.6 42 73.8
MELO3C025869.2 Cucumis melo HOM05D005872 ORTHO05D008133 1.1e-09 68.6 42 73.8
CiPaw.14G061000 Carya illinoinensis HOM05D005872 ORTHO05D008133 2.5e-09 67.4 43 69.8
MD11G1080100 Malus domestica HOM05D005872 ORTHO05D008133 3.3e-09 67.0 66 54.5
Eucgr.J01939 Eucalyptus grandis HOM05D005872 ORTHO05D008133 5.6e-09 66.2 48 68.8
Prupe.6G060600 Prunus persica HOM05D005872 ORTHO05D008133 1.2e-08 65.1 59 57.6
Duzib168G1043 Durio zibethinus HOM05D005872 ORTHO05D008133 1.6e-08 64.7 75 52.0
Gohir.D08G012800 Gossypium hirsutum HOM05D005872 ORTHO05D008133 1.6e-08 64.7 73 50.7
Gorai.004G006900 Gossypium raimondii HOM05D005872 ORTHO05D008133 1.6e-08 64.7 73 53.4
MD03G1073800 Malus domestica HOM05D005872 ORTHO05D008133 1.6e-08 64.7 66 53.0
Sabra06G0170900 Salix brachista HOM05D005872 ORTHO05D008133 2.8e-08 63.9 77 48.1
Ah.08g220770 Amaranthus hybridus HOM05D005872 ORTHO05D008133 3.6e-08 63.5 58 55.2
TAR369G0221 Trochodendron aralioides HOM05D005872 ORTHO05D008133 3.6e-08 63.5 64 54.7
TAR369G0416 Trochodendron aralioides HOM05D005872 ORTHO05D008133 3.6e-08 63.5 64 54.7
CANSAT54G1024 Cannabis sativa HOM05D005872 ORTHO05D008133 4.7e-08 63.2 42 64.3
CsaV3_6G016380 Cucumis sativus L. HOM05D005872 ORTHO05D008133 4.7e-08 63.2 73 47.9
FvH4_3g38221 Fragaria vesca HOM05D005872 ORTHO05D008133 6.1e-08 62.8 74 48.6
FAN11G1028 Fragaria x ananassa HOM05D005872 ORTHO05D008133 6.1e-08 62.8 74 48.6
Gohir.A08G002100 Gossypium hirsutum HOM05D005872 ORTHO05D008133 6.1e-08 62.8 73 52.1
Potri.006G221100 Populus trichocarpa HOM05D005872 ORTHO05D008133 6.1e-08 62.8 77 46.8
Sed0022906 Sechium edule HOM05D005872 ORTHO05D008133 6.1e-08 62.8 42 69.0
FAN21G3245 Fragaria x ananassa HOM05D005872 ORTHO05D008133 8.0e-08 62.4 67 52.2
Lj3g0000632 Lotus japonicus HOM05D005872 ORTHO05D008133 1.0e-07 62.0 46 67.4
QL01p026804 Quercus lobata HOM05D005872 ORTHO05D008133 1.0e-07 62.0 42 64.3
AUR62001682 Chenopodium quinoa HOM05D005872 ORTHO05D008133 1.4e-07 61.6 58 51.7
COL.COLO4_19111 Corchorus olitorius HOM05D005872 ORTHO05D008133 1.4e-07 61.6 37 73.0
Haze_24262 Corylus avellana HOM05D005872 ORTHO05D008133 1.4e-07 61.6 77 45.5
Thhalv10005741m.g Eutrema salsugineum HOM05D000121 ORTHO05D000102 1.4e-07 61.6 37 89.2
Cfa011659 Carpinus fangiana HOM05D005872 ORTHO05D008133 1.8e-07 61.2 77 45.5
Manes.01G164100 Manihot esculenta HOM05D005872 ORTHO05D008133 2.3e-07 60.8 76 47.4
FAN16G1585 Fragaria x ananassa HOM05D005872 ORTHO05D008133 3.1e-07 60.5 67 50.7
Lj1A141T52 Lonicera japonica HOM05D005872 ORTHO05D008133 3.1e-07 60.5 66 51.5
Lalb_Chr12g0210551 Lupinus albus HOM05D005872 ORTHO05D008133 3.1e-07 60.5 41 61.0
PGR119G2098 Punica granatum HOM05D005872 ORTHO05D008133 3.1e-07 60.5 77 50.6
RcHm_v2.0_Chr5g0068721 Rosa chinensis HOM05D005872 ORTHO05D008133 3.1e-07 60.5 76 48.7
AUR62020100 Chenopodium quinoa HOM05D005872 ORTHO05D008133 4.0e-07 60.1 58 50.0
Thecc.09G305200 Theobroma cacao HOM05D005872 ORTHO05D008133 4.0e-07 60.1 74 52.7
Ciclev10028981m.g Citrus clementina HOM05D005872 ORTHO05D008133 5.2e-07 59.7 42 73.8
Nn2g13627 Nelumbo nucifera HOM05D005872 ORTHO05D008133 8.9e-07 58.9 78 43.6
Carub.0007s2217 Capsella rubella HOM05D002988 ORTHO05D003479 1.2e-06 58.5 69 56.5
Aqoxy4G02659 Aquilegia oxysepala HOM05D005872 ORTHO05D008133 2.0e-06 57.8 76 50.0
TWI75G1308 Tripterygium wilfordii HOM05D005872 ORTHO05D008133 2.0e-06 57.8 111 41.4
Hma1.2p1_1010F.1_g247380 Hydrangea macrophylla HOM05D005872 ORTHO05D008133 5.8e-06 56.2 65 50.8
Sp7g17720 Schrenkiella parvula HOM05D002988 ORTHO05D003479 7.5e-06 55.8 71 53.5
EL10Ac7g16129 Beta vulgaris HOM05D005872 ORTHO05D008133 9.8e-06 55.5 39 69.2
Lsat_1_v5_gn_5_172301 Lactuca sativa HOM05D005872 ORTHO05D008133 9.8e-06 55.5 102 42.2


User provided reference genes

Program Settings