Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 8.4e-235 816.6 402 100.0
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 2.1e-233 812.0 402 99.3
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 9.6e-231 803.1 402 97.5
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 2.6e-228 795.0 402 97.0
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 1.7e-227 792.3 402 96.0
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 1.7e-227 792.3 402 96.0
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 1.7e-227 792.3 402 96.0
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 2.2e-227 792.0 402 95.8
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 2.2e-227 792.0 402 95.8
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.2e-227 792.0 402 96.3
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 2.4e-226 788.5 402 96.0
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 2.4e-226 788.5 402 96.0
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 2.4e-226 788.5 402 96.0
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 5.4e-226 787.3 402 95.8
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 5.4e-226 787.3 402 95.8
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 9.3e-226 786.6 402 95.8
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 9.3e-226 786.6 402 95.5
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 1.7e-224 782.3 402 94.5
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.5
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 2.1e-214 748.8 402 90.3
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.3
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 88.8
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.6
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.6e-212 741.9 402 88.8
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 88.1
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 87.8
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 87.8
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 87.8
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.8
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 88.6
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 87.6
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 87.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.9e-211 738.4 401 87.8
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 87.3
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 88.8
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 87.6
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 6.4e-211 737.3 402 86.3
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 87.3
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 87.3
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 88.3
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 86.3
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 87.8
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 87.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 87.1
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 87.6
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 87.6
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 86.3
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 86.1
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 86.6
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 88.6
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.3
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 86.3
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 7.1e-210 733.8 402 87.6
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.3
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 86.6
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 86.1
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 2.7e-209 731.9 402 85.8
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 87.1
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 4.6e-209 731.1 411 86.4
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 4.6e-209 731.1 402 87.8
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 6.0e-209 730.7 402 86.3
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 7.9e-209 730.3 402 87.1
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 86.6
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.0e-208 729.9 402 86.8
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 87.3
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 1.8e-208 729.2 402 87.1
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 86.1
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 8.7e-208 726.9 402 86.3
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 8.7e-208 726.9 417 84.7
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.3
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 1.9e-207 725.7 402 86.6
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 85.6
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 86.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.5e-207 725.3 402 86.3
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 4.3e-207 724.5 402 86.6
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 87.1
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 1.3e-206 723.0 402 87.1
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 1.6e-206 722.6 402 86.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 1.6e-206 722.6 402 85.6
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 2.1e-206 722.2 402 85.8
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 2.8e-206 721.8 402 87.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 3.7e-206 721.5 402 85.8
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 6.2e-206 720.7 429 83.0
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 8.1e-206 720.3 402 85.6
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 1.1e-205 719.9 402 85.3
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.4e-205 719.5 402 84.6
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.8e-205 719.2 402 86.6
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 85.8
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 4.0e-205 718.0 402 85.6
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 6.9e-205 717.2 402 85.3
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 6.9e-205 717.2 438 80.6
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.2e-204 716.5 402 84.1
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 85.3
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 4.5e-204 714.5 402 84.6
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 5.8e-204 714.1 402 83.8
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 5.8e-204 714.1 402 83.6
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 7.6e-204 713.8 402 85.1
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 7.6e-204 713.8 416 83.7
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 1.0e-203 713.4 396 86.1
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.7e-203 712.6 402 85.1
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 2.2e-203 712.2 416 83.4
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 2.9e-203 711.8 402 84.3
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 3.8e-203 711.4 402 85.3
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 1.9e-202 709.1 402 85.1
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.6e-201 706.1 401 84.3
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 4.6e-201 704.5 402 85.3
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 4.6e-201 704.5 402 85.1
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 6.7e-200 700.7 402 84.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 2.5e-199 698.7 402 84.1
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 4.3e-199 698.0 419 82.6
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 7.4e-199 697.2 402 81.1
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 2.8e-198 695.3 402 82.8
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 5.3e-197 691.0 400 82.2
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 2.2e-195 685.6 402 81.1
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 3.2e-194 681.8 441 76.2
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 5.7e-191 671.0 402 81.6
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 2.2e-190 669.1 402 80.1
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 5.3e-189 664.5 375 84.0
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 6.9e-189 664.1 402 79.4
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 3.4e-188 661.8 402 78.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 8.5e-187 657.1 402 78.6
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 3.2e-186 655.2 357 86.8
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 5.5e-186 654.4 402 79.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 4.3e-183 644.8 360 85.6
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 5.3e-181 637.9 361 84.8
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 2.3e-176 622.5 402 75.6
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.1e-176 621.3 401 73.1
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.7e-174 616.3 402 72.9
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 3.1e-173 612.1 340 86.2
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 3.5e-172 608.6 402 71.4
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.1e-170 603.6 334 86.8
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 3.2e-170 602.1 402 70.9
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.2e-169 600.1 403 70.7
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.7e-169 599.0 403 71.2
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 6.7e-168 594.3 402 73.9
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.6e-161 573.2 401 67.3
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.4e-157 560.1 403 65.5
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.4e-157 560.1 402 66.4
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.1e-146 523.9 289 85.1
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 5.2e-144 515.0 403 68.2
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 4.6e-140 501.9 419 63.2
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 8.9e-136 487.6 402 63.9
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 7.8e-124 448.0 259 81.5
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 5.6e-122 441.8 394 55.1
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 4.7e-113 412.1 276 75.7
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.2e-111 407.5 384 53.4
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 1.8e-104 383.6 229 80.3
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.5e-98 364.0 219 79.9
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 1.3e-97 360.9 219 78.5
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 2.8e-97 359.8 219 77.6
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.5e-79 300.8 300 52.0
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.0e-78 298.1 163 88.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 2.5e-74 283.5 160 84.4
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 1.0e-54 218.4 116 90.5
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 4.5e-31 139.8 86 77.9
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.8e-30 136.7 353 28.6
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 8.6e-30 135.6 351 26.5
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 9.8e-18 95.5 47 93.6
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 5.4e-16 89.7 45 86.7
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 1.8e-11 74.7 72 55.6
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 3.4e-10 70.5 316 22.2


User provided reference genes

Program Settings