Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.6e-227 791.2 381 100.0
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.6e-225 785.0 381 99.0
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 5.7e-225 783.9 381 99.0
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 3.8e-221 771.2 382 98.2
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 3.8e-221 771.2 382 98.2
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.9e-218 761.1 380 97.9
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 4.1e-199 698.0 374 92.0
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.6e-197 690.6 374 91.2
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 6.8e-194 680.6 375 90.4
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 6.8e-194 680.6 372 91.7
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 6.8e-194 680.6 372 91.7
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.5e-193 679.5 373 90.6
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.5e-193 679.5 373 90.6
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 4.4e-193 677.9 375 89.3
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 4.4e-193 677.9 375 89.3
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 7.5e-193 677.2 376 90.4
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.2e-192 675.6 383 88.0
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.7e-192 674.9 372 90.3
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 4.5e-190 667.9 372 89.8
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 4.5e-190 667.9 382 87.4
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.1e-188 663.3 375 88.5
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.3e-188 661.8 375 88.3
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 2.8e-187 658.7 370 87.8
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 4.0e-186 654.8 373 88.5
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 4.0e-186 654.8 374 88.5
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-183 646.4 371 87.3
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-183 646.4 371 87.3
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-183 646.4 371 87.3
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-183 646.4 371 87.3
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 2.0e-182 642.5 371 87.1
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.7e-181 639.4 351 90.0
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.0e-181 638.6 373 86.3
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.0e-181 638.6 373 86.3
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.4e-178 629.8 375 85.9
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 4.0e-178 628.2 371 84.6
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.6e-174 616.3 373 83.6
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.0e-173 613.6 375 82.7
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.7e-173 612.8 340 89.1
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 5.2e-170 601.3 383 80.9
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.1e-167 593.6 376 82.7
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.1e-167 593.6 376 82.7
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.1e-167 593.6 376 82.7
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.1e-167 593.6 376 82.7
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.1e-167 593.6 376 82.7
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.1e-167 593.6 376 82.7
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 3.4e-161 572.0 352 83.5
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 5.6e-156 554.7 370 77.3
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 5.1e-149 531.6 378 74.1
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.5e-148 529.3 315 84.8
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 3.4e-145 518.8 302 86.1
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 6.4e-144 514.6 371 73.6
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 3.0e-141 505.8 303 85.1
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 6.0e-134 481.5 311 80.4
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 1.3e-133 480.3 287 84.3
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.4e-124 448.0 373 66.2
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 6.5e-120 434.9 235 88.9
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 8.5e-120 434.5 311 75.2
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.2e-119 432.2 277 79.1
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 5.1e-117 425.2 233 92.7
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 4.4e-108 395.6 195 99.5
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 5.3e-106 388.7 196 98.5
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 3.5e-105 386.0 268 75.7
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 2.7e-102 376.3 288 72.2
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 3.1e-98 362.8 187 96.3
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.6e-97 360.5 177 100.0
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.5e-97 359.0 276 71.0
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 3.2e-95 352.8 187 94.7
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 8.0e-94 348.2 187 94.1
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 8.0e-94 348.2 187 94.1
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.2e-92 344.4 187 93.0
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 5.7e-92 342.0 186 93.0
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-90 337.4 187 92.0
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 4.1e-90 335.9 287 65.5
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 9.1e-90 334.7 218 79.8
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 1.7e-88 330.5 187 89.8
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 3.8e-88 329.3 186 90.9
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.3e-83 312.0 297 57.6
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.4e-82 308.9 297 57.2
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 9.1e-82 308.1 175 82.3
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 9.1e-82 308.1 175 82.3
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.7e-75 287.3 170 87.1
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 5.6e-71 272.3 132 100.0
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.8e-69 267.3 160 84.4
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 8.9e-69 265.0 120 100.0
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 8.9e-69 265.0 120 100.0
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.7e-64 250.8 133 91.7
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.2e-62 242.3 137 86.1
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 8.0e-62 241.9 115 95.7
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.2e-59 233.8 123 93.5
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 6.0e-57 225.7 148 73.0
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.7e-56 224.2 118 94.9
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 9.5e-55 218.4 117 93.2
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.6e-52 210.3 130 81.5
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 4.4e-52 209.5 125 84.8
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-50 204.9 119 87.4
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 1.4e-50 204.5 116 91.4
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.4e-45 187.2 619 31.2
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 5.8e-44 182.6 115 80.9
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.4e-43 179.1 165 61.2
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 7.8e-41 172.2 89 94.4
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-39 167.9 89 92.1
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 1.5e-36 157.9 103 73.8
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.4e-36 156.4 90 88.9
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.4e-34 151.4 75 97.3
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 7.9e-33 145.6 81 88.9
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-32 144.4 89 85.4
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-32 144.4 89 85.4
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.4e-29 134.8 89 78.7
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 5.3e-29 132.9 68 94.1
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 5.3e-29 132.9 65 96.9
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 2.6e-28 130.6 81 85.2
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 8.4e-27 125.6 88 75.0
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-26 125.2 80 82.5
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.6e-25 121.3 75 85.3
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-25 121.3 62 93.5
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 4.6e-25 119.8 80 78.8
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 6.0e-25 119.4 98 65.3
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.0e-24 117.1 69 82.6
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.4e-23 112.5 74 78.4
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 2.8e-22 110.5 71 73.2
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 1.8e-21 107.8 57 89.5
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 2.4e-21 107.5 69 72.5
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.0e-21 105.5 168 45.2
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 1.3e-19 101.7 57 86.0
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-18 98.2 68 73.5
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 3.2e-18 97.1 97 55.7
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.3e-16 91.7 62 79.0
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 2.5e-15 87.4 48 85.4
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.5e-15 87.4 167 38.3
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 8.2e-14 82.4 49 85.7
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-12 78.2 67 61.2
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.4e-12 77.0 49 75.5
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 4.5e-12 76.6 51 74.5
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 1.0e-11 75.5 45 84.4
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 1.0e-11 75.5 47 76.6
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 2.2e-11 74.3 63 61.9
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.4e-10 71.6 88 47.7
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.2e-10 70.5 48 75.0
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 5.5e-10 69.7 47 74.5
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.8e-08 64.7 53 62.3
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-07 62.0 29 86.2
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 1.5e-07 61.6 48 66.7
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 2.5e-07 60.8 35 85.7
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 2.5e-07 60.8 28 96.4


User provided reference genes

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