Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 7.9e-137 490.3 231 100.0
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 7.4e-135 483.8 231 98.7
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.5e-114 415.6 197 99.5
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 7.2e-114 414.1 197 99.5
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 7.2e-114 414.1 197 99.5
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.7e-113 412.1 197 99.0
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.1e-109 398.7 197 97.0
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 4.5e-108 394.8 231 84.8
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 2.2e-107 392.5 197 95.9
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.2e-107 392.5 197 95.9
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 4.2e-106 388.3 197 94.4
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 4.2e-106 388.3 197 94.4
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 1.2e-105 386.7 197 94.4
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 6.1e-105 384.4 197 94.4
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.2e-104 381.3 197 94.4
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.2e-104 381.3 197 94.4
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.5e-103 379.8 196 93.4
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 2.6e-103 379.0 193 94.8
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.6e-103 379.0 193 94.8
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 2.6e-103 379.0 193 94.8
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 2.6e-103 379.0 193 94.8
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-103 379.0 187 97.9
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-103 379.0 187 97.9
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.6e-103 379.0 187 97.9
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 5.7e-103 377.9 197 92.9
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 5.7e-103 377.9 197 92.9
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.3e-102 376.7 198 93.9
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 3.7e-102 375.2 196 92.3
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 4.8e-102 374.8 197 92.9
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 4.8e-102 374.8 193 93.8
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.4e-101 373.2 192 93.8
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.4e-101 373.2 197 91.9
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.0e-100 369.4 193 91.2
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.0e-99 367.1 197 91.4
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.0e-99 367.1 197 91.4
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.9e-98 362.8 197 90.4
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.9e-98 362.8 197 90.4
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.9e-98 362.8 197 90.4
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.9e-98 362.8 197 90.4
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.9e-98 362.8 197 90.4
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.9e-98 362.8 197 90.4
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.3e-96 355.9 193 90.7
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.0e-96 355.1 193 90.2
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.4e-95 351.7 193 88.1
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 4.8e-94 348.2 192 88.0
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 1.4e-93 346.7 161 100.0
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.7e-91 339.7 165 96.4
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 4.2e-90 335.1 185 87.6
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 7.2e-90 334.3 167 95.2
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.6e-89 332.0 193 84.5
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 4.7e-89 331.6 165 94.5
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.8e-88 329.7 184 88.0
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 5.7e-87 324.7 197 83.8
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 7.5e-87 324.3 173 90.2
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 3.1e-85 318.9 165 93.9
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 5.4e-85 318.2 193 79.3
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.7e-83 313.2 164 91.5
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 5.0e-83 311.6 173 88.4
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.5e-82 310.1 183 85.8
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.6e-81 306.6 191 81.2
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 3.0e-80 302.4 161 89.4
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 4.0e-80 302.0 153 92.8
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.3e-78 297.0 137 99.3
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.9e-78 295.0 187 80.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.3e-75 286.2 165 85.5
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.6e-74 281.6 165 84.2
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 3.0e-72 275.8 161 83.2
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 3.0e-72 275.8 161 83.2
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 1.2e-71 273.9 164 81.7
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 2.2e-70 269.6 164 80.5
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 6.4e-70 268.1 163 82.2
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 9.2e-69 264.2 134 95.5
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 9.2e-69 264.2 136 95.6
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 6.6e-67 258.1 219 63.5
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.6e-67 258.1 219 63.5
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.6e-65 253.4 141 85.1
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 1.1e-64 250.8 124 100.0
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.5e-63 246.9 197 67.5
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.6e-63 246.1 162 77.2
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 5.8e-63 245.0 119 94.1
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.9e-62 241.9 161 76.4
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 1.3e-59 233.8 118 90.7
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 2.3e-59 233.0 184 64.7
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 7.3e-58 228.0 112 95.5
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-52 210.7 105 91.4
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 2.1e-52 209.9 104 99.0
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 6.6e-51 204.9 161 68.3
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 1.1e-50 204.1 108 96.3
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 1.2e-47 194.1 117 87.2
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 7.1e-45 184.9 80 100.0
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.1e-42 177.6 160 60.0
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.6e-42 174.5 197 51.8
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.6e-41 173.7 187 50.3
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 4.7e-41 172.2 91 92.3
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 5.8e-39 165.2 109 78.0
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 3.2e-37 159.5 79 87.3
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.2e-36 157.5 80 87.5
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 4.0e-32 142.5 137 58.4
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 3.4e-31 139.4 77 83.1
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 2.4e-29 133.3 61 96.7
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 7.1e-29 131.7 66 95.5
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 8.1e-25 118.2 55 96.4
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.1e-21 107.8 47 93.6
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 7.1e-21 105.1 52 90.4
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.1e-21 105.1 64 73.4
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 6.7e-19 98.6 187 36.4
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.6e-18 95.5 104 52.9
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 5.3e-16 89.0 51 70.6
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 1.5e-15 87.4 84 53.6
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.2e-14 83.6 52 88.5
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 6.5e-14 82.0 40 92.5
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.2e-12 77.8 40 87.5
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.5e-10 70.1 44 70.5
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 6.3e-09 65.5 34 88.2
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.3e-09 65.5 45 75.6
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 8.2e-09 65.1 35 85.7
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.2e-09 65.1 36 88.9
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 4.1e-08 62.8 83 42.2
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 3.8e-06 56.2 27 92.6


User provided reference genes

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