Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G44420 Arabidopsis lyrata HOM05D002965 ORTHO05D010536 3.2e-131 471.9 252 100.0
AT2G07674 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 1.2e-122 443.4 252 95.2
BNapus_Darmor_BZH_scaffold_234p00050 Brassica napus HOM05D002965 ORTHO05D010536 2.6e-77 292.7 250 68.4
BolSC28t60357H Brassica oleracea HOM05D002965 ORTHO05D010536 1.7e-76 290.0 249 64.3
BraSC48t46254Z Brassica rapa HOM05D002965 ORTHO05D010536 1.7e-76 290.0 249 64.3
ATMG01010 Arabidopsis thaliana HOM05D002965 ORTHO05D010536 3.5e-61 239.2 119 100.0
CARHR283260 Cardamine hirsuta HOM05D002965 ORTHO05D010536 1.6e-53 213.8 119 89.1
Thhalv10023135m.g Eutrema salsugineum HOM05D002965 ORTHO05D010536 3.4e-48 196.1 216 54.6
Aqoxy3G01134 Aquilegia oxysepala HOM05D002965 ORTHO05D010536 2.6e-40 169.9 203 52.7
SabraMtG0009900 Salix brachista HOM05D002965 ORTHO05D010536 2.6e-40 169.9 212 50.0
Solyc00g500226.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 2.8e-39 166.4 234 45.3
Solyc00g500262.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 2.8e-39 166.4 234 45.3
Solyc06g074585.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 4.8e-39 165.6 242 44.2
Solyc00g500351.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 1.4e-38 164.1 236 44.5
PGSC0003DMG400010573 Solanum tuberosum HOM05D002965 ORTHO05D010536 9.1e-38 161.4 225 44.9
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 2.7e-37 159.8 210 46.7
Lj6A7T8 Lonicera japonica HOM05D002965 ORTHO05D010536 1.3e-36 157.5 197 52.3
Solyc00g500114.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 8.0e-34 148.3 146 54.1
Ca_28560_v3 Cicer arietinum L. HOM05D002965 ORTHO05D010536 2.8e-31 139.8 142 53.5
Glyma.17G186200 Glycine max HOM05D002965 ORTHO05D010536 9.2e-30 134.8 172 48.8
HanXRQMTg0579151 Helianthus annuus HOM05D002965 ORTHO05D010536 5.9e-29 132.1 145 51.7
Hma1.2p1_0290F.1_g114710 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 1.1e-27 127.9 204 45.1
Hma1.2p1_0290F.1_g114715 Hydrangea macrophylla HOM05D002965 ORTHO05D010536 1.1e-27 127.9 204 45.1
Aa31csc464G20 Aethionema arabicum HOM05D000743 ORTHO05D000580 5.6e-27 125.6 128 54.7
PGR028G0005 Punica granatum HOM05D002965 ORTHO05D010536 9.5e-27 124.8 132 51.5
PGR069G0002 Punica granatum HOM05D002965 ORTHO05D010536 9.5e-27 124.8 132 51.5
PGR069G0012 Punica granatum HOM05D002965 ORTHO05D010536 9.5e-27 124.8 132 51.5
PGR069G0018 Punica granatum HOM05D002965 ORTHO05D010536 9.5e-27 124.8 132 51.5
PGR071G0002 Punica granatum HOM05D002965 ORTHO05D010536 9.5e-27 124.8 132 51.5
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-26 124.4 249 38.2
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-26 124.4 249 38.2
HanXRQChr07g0188971 Helianthus annuus HOM05D002965 ORTHO05D010536 1.2e-26 124.4 145 49.7
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 1.6e-26 124.0 111 56.8
ECA003G0005 Erigeron canadensis HOM05D002965 ORTHO05D000580 6.1e-26 122.1 139 50.4
ECA039G0005 Erigeron canadensis HOM05D002965 ORTHO05D010536 6.1e-26 122.1 139 50.4
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 6.1e-26 122.1 173 48.0
Eucgr.I01860 Eucalyptus grandis HOM05D002965 ORTHO05D010536 1.0e-25 121.3 115 51.3
PGR028G0001 Punica granatum HOM05D002864 ORTHO05D007972 5.2e-25 119.0 142 47.2
BraSC159t45718Z Brassica rapa HOM05D002965 ORTHO05D011945 2.9e-23 113.2 124 56.5
Gorai.013G137600 Gossypium raimondii HOM05D002965 ORTHO05D010536 2.9e-23 113.2 166 49.4
ATMG01020 Arabidopsis thaliana HOM05D002965 ORTHO05D011945 1.1e-22 111.3 79 77.2
Aa31csc464G90 Aethionema arabicum HOM05D002965 ORTHO05D011945 4.6e-21 105.9 128 60.9
Aa31csc1081G40 Aethionema arabicum HOM05D002965 ORTHO05D010536 1.0e-20 104.8 61 78.7
Thhalv10022998m.g Eutrema salsugineum HOM05D002965 ORTHO05D011945 3.9e-20 102.8 133 60.9
Gohir.D06G053851 Gossypium hirsutum HOM05D002965 ORTHO05D010536 3.9e-20 102.8 83 60.2
TPR.G28262 Trifolium pratense HOM05D002965 ORTHO05D010536 8.6e-20 101.7 149 42.3
Sopen11g024950 Solanum pennellii HOM05D000004 ORTHO05D000002 1.5e-19 100.9 99 49.5
Potri.007G062262 Populus trichocarpa HOM05D002965 ORTHO05D010536 1.9e-19 100.5 77 61.0
BcaC05g26887 Brassica carinata HOM05D002965 ORTHO05D010536 1.2e-18 97.8 71 66.2
PGSC0003DMG400040498 Solanum tuberosum HOM05D002965 ORTHO05D010514 1.2e-18 97.8 160 43.1
CARHR283030 Cardamine hirsuta HOM05D002965 ORTHO05D011945 3.6e-18 96.3 97 60.8
BcaC09g49585 Brassica carinata HOM05D008814 ORTHO05D010812 8.0e-18 95.1 107 57.9
arahy.Tifrunner.gnm1.ann1.LH5L6M Arachis hypogaea HOM05D002965 ORTHO05D010536 8.9e-17 91.7 98 46.9
HanXRQChr10g0297161 Helianthus annuus HOM05D002965 ORTHO05D010536 3.4e-16 89.7 77 54.5
HanXRQChr07g0188961 Helianthus annuus HOM05D002965 ORTHO05D010536 7.5e-16 88.6 100 52.0
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 1.3e-15 87.8 70 62.9
HanXRQChr07g0189021 Helianthus annuus HOM05D002965 ORTHO05D010536 2.9e-15 86.7 95 52.6
Lalb_Chr00c24g0406881 Lupinus albus HOM05D002965 ORTHO05D010536 2.9e-15 86.7 90 54.4
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 3.7e-15 86.3 93 45.2
EL10Ac5g12181 Beta vulgaris HOM05D002965 ORTHO05D010536 8.3e-15 85.1 77 54.5
CARHR283270 Cardamine hirsuta HOM05D002965 ORTHO05D011945 1.4e-14 84.3 75 70.7
CAN.G362.38 Capsicum annuum HOM05D002965 ORTHO05D010994 5.4e-14 82.4 72 54.2
VMungo0251G1451 Vigna mungo HOM05D002965 ORTHO05D010536 5.4e-14 82.4 71 54.9
Solyc11g045430.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 4.6e-13 79.3 76 47.4
ATMG00670 Arabidopsis thaliana HOM05D002965 ORTHO05D011945 3.0e-12 76.6 126 46.0
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.9e-12 76.3 48 70.8
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 6.6e-12 75.5 231 31.6
HanXRQChr02g0035251 Helianthus annuus HOM05D002965 ORTHO05D010536 8.6e-12 75.1 56 60.7
Psat0s7112g0120 Pisum sativum HOM05D002965 ORTHO05D010536 1.5e-11 74.3 82 50.0
BcaC05g26886 Brassica carinata HOM05D002965 ORTHO05D011945 2.5e-11 73.6 81 58.0
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 5.6e-11 72.4 70 58.6
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 2.8e-10 70.1 101 50.5
BraSC77t46663Z Brassica rapa HOM05D002965 ORTHO05D010536 8.1e-10 68.6 56 64.3
HanXRQChr05g0134431 Helianthus annuus HOM05D002965 ORTHO05D010536 3.1e-09 66.6 61 52.5
HanXRQChr11g0327841 Helianthus annuus HOM05D002965 ORTHO05D010536 5.2e-09 65.9 61 52.5
arahy.Tifrunner.gnm1.ann1.S21A07 Arachis hypogaea HOM05D008923 ORTHO05D011423 1.2e-08 64.7 51 64.7
Aa31csc1081G50 Aethionema arabicum HOM05D002965 ORTHO05D017245 2.0e-08 63.9 67 55.2
Solyc00g025300.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 7.6e-08 62.0 44 65.9
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 1.3e-07 61.2 107 46.7
Peaxi162Scf00348g00058 Petunia axillaris HOM05D002965 ORTHO05D010994 3.7e-07 59.7 56 50.0
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 6.4e-07 58.9 53 62.3
BolC1t03449H Brassica oleracea HOM05D010793 ORTHO05D011945 6.4e-07 58.9 53 62.3


User provided reference genes

Program Settings