Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.4e-102 376.3 192 100.0
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 9.6e-72 273.9 197 78.2
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 1.0e-60 237.3 223 63.7
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 2.1e-58 229.6 195 66.2
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 2.6e-53 212.6 219 58.4
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 5.0e-52 208.4 219 57.5
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 3.7e-47 192.2 221 55.2
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.7e-47 192.2 225 54.2
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.1e-46 190.7 235 51.5
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 1.4e-46 190.3 227 52.9
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 2.6e-45 186.0 216 55.1
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 3.4e-45 185.7 223 53.8
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 4.5e-45 185.3 224 53.6
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 1.0e-44 184.1 221 52.9
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 1.0e-44 184.1 221 52.9
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 1.0e-44 184.1 221 52.9
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.4e-43 180.3 222 51.8
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 4.2e-43 178.7 219 52.5
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 6.7e-41 171.4 230 48.7
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 2.7e-34 149.4 238 45.4
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 4.4e-32 142.1 239 42.7
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 9.1e-30 134.4 198 44.9
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 1.2e-29 134.0 237 42.2
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 2.7e-29 132.9 247 40.1
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 3.5e-29 132.5 261 39.8
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.5e-29 132.5 220 41.4
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.5e-29 132.5 240 40.4
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.5e-29 132.1 237 41.8
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.0e-28 131.0 218 42.2
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.7e-28 130.2 220 40.9
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 1.7e-28 130.2 249 41.0
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 3.8e-28 129.0 233 40.3
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 8.5e-28 127.9 250 37.6
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 8.5e-28 127.9 237 40.5
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 8.5e-28 127.9 240 40.0
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 1.1e-27 127.5 237 39.2
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.1e-27 127.5 215 43.3
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 1.1e-27 127.5 241 39.8
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 2.5e-27 126.3 238 39.9
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 4.2e-27 125.6 223 41.7
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 7.2e-27 124.8 223 42.6
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 9.4e-27 124.4 239 38.1
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 1.2e-26 124.0 249 37.8
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.6e-26 123.6 200 44.5
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 1.6e-26 123.6 200 44.5
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 1.6e-26 123.6 232 40.5
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.1e-26 123.2 244 38.1
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 2.1e-26 123.2 215 40.5
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 3.6e-26 122.5 220 41.4
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 4.7e-26 122.1 246 37.0
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 4.7e-26 122.1 231 42.0
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 4.7e-26 122.1 250 38.0
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 4.7e-26 122.1 200 44.0
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 1.0e-25 120.9 239 39.3
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.0e-25 120.9 238 38.7
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 2.3e-25 119.8 239 38.9
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 4.0e-25 119.0 202 42.1
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 8.8e-25 117.9 243 36.2
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.5e-24 117.1 247 39.3
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 4.4e-24 115.5 231 39.4
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 4.4e-24 115.5 237 37.6
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 5.7e-24 115.2 227 41.4
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 7.5e-24 114.8 238 36.6
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 7.5e-24 114.8 243 38.7
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 7.5e-24 114.8 247 38.5
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 1.3e-23 114.0 250 37.2
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.7e-23 113.6 242 36.4
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.7e-23 113.6 243 35.8
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 2.2e-23 113.2 246 35.8
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.8e-23 112.8 224 39.7
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 3.7e-23 112.5 230 38.7
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 8.3e-23 111.3 239 38.1
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 8.3e-23 111.3 251 37.5
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 8.3e-23 111.3 203 39.9
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 4.1e-22 109.0 227 36.6
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 5.4e-22 108.6 240 36.7
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 7.0e-22 108.2 247 35.2
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 7.0e-22 108.2 261 36.8
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 2.0e-21 106.7 239 36.8
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 2.0e-21 106.7 268 35.8
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 2.7e-21 106.3 225 35.1
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 2.7e-21 106.3 242 34.7
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 3.5e-21 105.9 231 34.6
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 5.9e-21 105.1 269 36.8
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 5.9e-21 105.1 238 37.8
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 7.7e-21 104.8 240 36.2
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.3e-20 104.0 203 38.4
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 5.0e-20 102.1 205 39.0
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 1.9e-19 100.1 198 37.4
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.9e-19 100.1 233 34.3
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 3.3e-19 99.4 245 34.3
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 4.2e-19 99.0 231 37.7
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 5.5e-19 98.6 251 33.5
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 5.5e-19 98.6 240 35.4
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 7.2e-19 98.2 253 35.2
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 1.2e-18 97.4 223 35.9
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-18 97.4 249 34.1
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.8e-17 93.6 179 42.5
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 3.0e-17 92.8 208 39.4
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 4.0e-17 92.4 202 37.1
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 5.2e-17 92.0 217 34.1
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.2e-16 90.9 214 33.2
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 2.0e-16 90.1 218 34.9
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 3.4e-16 89.4 244 33.6
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 4.4e-16 89.0 246 38.6
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 2.8e-15 86.3 208 34.1
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 2.8e-15 86.3 212 32.5
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 2.8e-15 86.3 212 37.3
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.1e-14 84.3 243 33.3
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 2.4e-14 83.2 234 33.3
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.4e-14 83.2 236 33.9
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 3.1e-14 82.8 193 35.2
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 9.2e-14 81.3 201 33.3
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 2.0e-13 80.1 211 33.2
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 1.3e-12 77.4 91 48.4
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 8.6e-12 74.7 227 31.7
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 4.3e-11 72.4 248 32.3
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 5.6e-11 72.0 227 30.8
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 7.3e-11 71.6 248 30.2
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 4.0e-09 65.9 101 45.5
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 4.0e-09 65.9 221 30.3
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 5.2e-09 65.5 210 31.0
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.2e-08 64.3 210 30.5
Thhalv10000359m.g Eutrema salsugineum HOM05D001181 ORTHO05D005506 3.4e-08 62.8 68 50.0
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 1.9e-06 57.0 210 28.1
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 7.0e-06 55.1 226 25.7
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 7.0e-06 55.1 237 30.0


User provided reference genes

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