Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G43910 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.5e-78 296.2 154 100.0
AL3G46610 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.7e-48 195.7 140 78.6
AL6G18290 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 5.6e-46 188.0 131 81.7
AL1G28800 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 6.2e-45 184.5 112 88.4
AT5G07950 Arabidopsis thaliana HOM05D005448 ORTHO05D006405 1.1e-44 183.7 131 78.6
Carub.0006s0685 Capsella rubella HOM05D005448 ORTHO05D006405 1.4e-41 173.3 131 72.5
CARHR205240 Cardamine hirsuta HOM05D005448 ORTHO05D006405 1.9e-41 172.9 131 71.8
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 3.0e-39 165.6 130 69.2
Aa31LG3G18560 Aethionema arabicum HOM05D005448 ORTHO05D006405 6.6e-39 164.5 130 69.2
Sp6g34990 Schrenkiella parvula HOM05D005448 ORTHO05D006405 6.6e-39 164.5 131 70.2
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 1.5e-38 163.3 130 69.2
BcaB05g21593 Brassica carinata HOM05D005448 ORTHO05D006405 5.6e-38 161.4 130 68.5
Thhalv10014193m.g Eutrema salsugineum HOM05D005448 ORTHO05D006405 2.8e-37 159.1 129 69.8
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 8.1e-37 157.5 131 65.6
BraA02t04938Z Brassica rapa HOM05D005448 ORTHO05D006405 1.5e-35 153.3 130 65.4
C02p03370 Brassica napus HOM05D005448 ORTHO05D006405 4.4e-35 151.8 137 62.8
BolC2t06299H Brassica oleracea HOM05D005448 ORTHO05D006405 4.4e-35 151.8 137 62.8
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 9.2e-33 144.1 115 67.0
AL1G43330 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-32 143.7 75 98.7
AL4G20140 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.2e-32 143.7 75 98.7
BcaC03g13203 Brassica carinata HOM05D005448 ORTHO05D006405 3.5e-32 142.1 159 54.1
AL5G40680 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.6e-32 141.7 144 64.6
AL6G22380 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 4.6e-32 141.7 144 64.6
THA.LOC104801284 Tarenaya hassleriana HOM05D005448 ORTHO05D006405 1.3e-31 140.2 131 58.0
AL7G18100 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 1.6e-29 133.3 128 63.3
AL3G19900 Arabidopsis lyrata HOM05D005448 ORTHO05D006405 2.1e-29 132.9 128 62.5
Duzib205G1002 Durio zibethinus HOM05D005448 ORTHO05D006405 1.5e-27 126.7 136 52.2
Haze_07701 Corylus avellana HOM05D005448 ORTHO05D006405 7.6e-27 124.4 135 50.4
Sabra18G0047800 Salix brachista HOM05D005448 ORTHO05D006405 7.6e-27 124.4 137 51.8
Potri.018G051500 Populus trichocarpa HOM05D005448 ORTHO05D006405 9.9e-27 124.0 131 55.0
CiPaw.11G051600 Carya illinoinensis HOM05D005448 ORTHO05D006405 1.3e-26 123.6 132 53.0
Manes.06G086000 Manihot esculenta HOM05D005448 ORTHO05D006405 1.7e-26 123.2 137 52.6
Gohir.A11G033100 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.2e-26 122.9 136 52.2
Gohir.D11G036400 Gossypium hirsutum HOM05D005448 ORTHO05D006405 2.2e-26 122.9 136 52.9
Gorai.007G039200 Gossypium raimondii HOM05D005448 ORTHO05D006405 2.2e-26 122.9 136 52.9
Cpa.g.sc94.25 Carica papaya HOM05D005448 ORTHO05D006405 1.1e-25 120.6 137 51.8
CsaV3_6G039380 Cucumis sativus L. HOM05D005448 ORTHO05D006405 1.1e-25 120.6 132 56.1
MBI17_g24520_MAGBIO Magnolia biondii HOM05D005448 ORTHO05D006405 4.2e-25 118.6 136 47.1
MELO3C014255.2 Cucumis melo HOM05D005448 ORTHO05D006405 9.3e-25 117.5 132 54.5
PGR044G0604 Punica granatum HOM05D005448 ORTHO05D006405 9.3e-25 117.5 132 51.5
Atru.chr12.1057 Acer truncatum HOM05D005448 ORTHO05D006405 1.2e-24 117.1 136 52.2
GSVIVG01007889001 Vitis vinifera HOM05D005448 ORTHO05D006405 1.6e-24 116.7 131 54.2
Oeu001027.1 Olea europaea HOM05D005448 ORTHO05D006405 2.7e-24 115.9 130 50.8
Solyc06g069510.3 Solanum lycopersicum HOM05D005448 ORTHO05D006405 3.5e-24 115.5 130 51.5
TAR636G2978 Trochodendron aralioides HOM05D005448 ORTHO05D006405 3.5e-24 115.5 145 46.2
CANSAT11G2386 Cannabis sativa HOM05D005448 ORTHO05D006405 6.0e-24 114.8 130 51.5
Sopen06g026800 Solanum pennellii HOM05D005448 ORTHO05D006405 6.0e-24 114.8 130 51.5
GSVIVG01007888001 Vitis vinifera HOM05D005448 ORTHO05D006405 6.0e-24 114.8 131 54.2
CAN.G587.40 Capsicum annuum HOM05D005448 ORTHO05D006405 1.3e-23 113.6 130 50.0
Prupe.7G041400 Prunus persica HOM05D005448 ORTHO05D006405 1.3e-23 113.6 132 51.5
QL10p019149 Quercus lobata HOM05D005448 ORTHO05D006405 1.3e-23 113.6 135 49.6
TAR371G1280 Trochodendron aralioides HOM05D005448 ORTHO05D006405 1.3e-23 113.6 128 48.4
Ciclev10020839m.g Citrus clementina HOM05D005448 ORTHO05D006405 1.7e-23 113.2 136 49.3
Dinv10698 Davidia involucrata HOM05D005448 ORTHO05D006405 2.3e-23 112.8 131 52.7
PGSC0003DMG400033055 Solanum tuberosum HOM05D005448 ORTHO05D006405 2.3e-23 112.8 130 49.2
MD17G1029400 Malus domestica HOM05D005448 ORTHO05D006405 3.9e-23 112.1 135 49.6
RcHm_v2.0_Chr7g0182771 Rosa chinensis HOM05D005448 ORTHO05D006405 3.9e-23 112.1 135 50.4
Thecc.03G099500 Theobroma cacao HOM05D005448 ORTHO05D006405 5.1e-23 111.7 136 47.8
Actinidia38176 Actinidia chinensis HOM05D005448 ORTHO05D006405 6.6e-23 111.3 129 50.4
Dinv17396 Davidia involucrata HOM05D005448 ORTHO05D006405 1.5e-22 110.2 129 52.7
Cc04_g16850 Coffea canephora HOM05D005448 ORTHO05D006405 1.9e-22 109.8 130 49.2
Rhsim12G0151600 Rhododendron simsii HOM05D005448 ORTHO05D006405 1.9e-22 109.8 132 52.3
Cc04_g13190 Coffea canephora HOM05D005448 ORTHO05D006405 3.3e-22 109.0 130 49.2
C04p62800 Brassica napus HOM05D005448 ORTHO05D006405 7.3e-22 107.8 128 53.9
RcHm_v2.0_Chr4g0399581 Rosa chinensis HOM05D005448 ORTHO05D006405 7.3e-22 107.8 135 49.6
Lalb_Chr07g0178271 Lupinus albus HOM05D005448 ORTHO05D006405 9.6e-22 107.5 136 46.3
SGA_v2.0_scaffold313G48306 Striga asiatica HOM05D005448 ORTHO05D006405 1.3e-21 107.1 131 48.1
MD14G1210300 Malus domestica HOM05D005448 ORTHO05D006405 1.6e-21 106.7 135 48.1
BolC4t27763H Brassica oleracea HOM05D005448 ORTHO05D006405 2.1e-21 106.3 128 53.1
Peaxi162Scf00013g00627 Petunia axillaris HOM05D005448 ORTHO05D006405 2.1e-21 106.3 130 50.0
CANSAT01G1259 Cannabis sativa HOM05D005448 ORTHO05D006405 2.8e-21 105.9 130 48.5
Lj5A104G41 Lonicera japonica HOM05D005448 ORTHO05D006405 2.8e-21 105.9 131 46.6
Hund02597 Selenicereus undatus HOM05D005448 ORTHO05D006405 2.8e-21 105.9 131 48.1
ECA246G3555 Erigeron canadensis HOM05D005448 ORTHO05D006405 3.6e-21 105.5 130 50.0
Migut.E01012 Erythranthe guttata HOM05D005448 ORTHO05D006405 3.6e-21 105.5 130 48.5
Eucgr.F03643 Eucalyptus grandis HOM05D005448 ORTHO05D006405 3.6e-21 105.5 136 47.8
HanXRQChr05g0157251 Helianthus annuus HOM05D005448 ORTHO05D006405 6.2e-21 104.8 133 49.6
Aqoxy3G03610 Aquilegia oxysepala HOM05D005448 ORTHO05D006405 8.1e-21 104.4 133 46.6
AUR62008511 Chenopodium quinoa HOM05D005448 ORTHO05D006405 2.4e-20 102.8 128 48.4
Lj4g0022538 Lotus japonicus HOM05D005448 ORTHO05D006405 3.1e-20 102.4 139 46.0
Nitab4.5_0001688g0100 Nicotiana tabacum HOM05D005448 ORTHO05D006405 4.0e-20 102.1 136 47.8
FvH4_5g14050 Fragaria vesca HOM05D005448 ORTHO05D006405 5.3e-20 101.7 131 47.3
FAN13G0193 Fragaria x ananassa HOM05D005448 ORTHO05D006405 5.3e-20 101.7 131 47.3
TPR.G2023 Trifolium pratense HOM05D005448 ORTHO05D006405 5.3e-20 101.7 136 44.9
Medtr4g109400 Medicago truncatula HOM05D005448 ORTHO05D006405 9.0e-20 100.9 136 44.1
MSTRG.11359 Avicennia marina HOM05D005448 ORTHO05D006405 1.2e-19 100.5 130 45.4
FAN18G0267 Fragaria x ananassa HOM05D005448 ORTHO05D006405 1.5e-19 100.1 131 46.6
SHI27027 Sapria himalayana HOM05D005448 ORTHO05D006405 4.4e-19 98.6 130 43.8
Glyma.05G022400 Glycine max HOM05D005448 ORTHO05D006405 5.8e-19 98.2 139 43.2
FAN08G1797 Fragaria x ananassa HOM05D005448 ORTHO05D006405 7.6e-19 97.8 131 45.8
Psat4g047920 Pisum sativum HOM05D005448 ORTHO05D006405 1.3e-18 97.1 139 43.2
Nn3g17421 Nelumbo nucifera HOM05D005448 ORTHO05D006405 3.8e-18 95.5 130 44.6
BcaC02g07836 Brassica carinata HOM05D005448 ORTHO05D006405 4.9e-18 95.1 115 52.2
Sc25g0001780 Simmondsia chinensis HOM05D005448 ORTHO05D006405 4.9e-18 95.1 128 45.3
TWI53G0232 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 3.2e-17 92.4 136 39.7
Os03g0213200 Oryza sativa ssp. japonica HOM05D005448 ORTHO05D006405 5.4e-17 91.7 139 37.4
Ca_21785_v3 Cicer arietinum L. HOM05D005448 ORTHO05D006405 1.2e-16 90.5 120 47.5
DCAR_024881 Daucus carota HOM05D005448 ORTHO05D006405 2.1e-16 89.7 128 42.2
Nitab4.5_0000361g0060 Nicotiana tabacum HOM05D005448 ORTHO05D006405 2.1e-16 89.7 158 41.1
Phvul.003G185700 Phaseolus vulgaris HOM05D005448 ORTHO05D006405 7.9e-16 87.8 139 41.7
CSS0038496 Camellia sinensis var. sinensis HOM05D005448 ORTHO05D006405 1.1e-14 84.0 129 45.0
ATR0064G115 Amborella trichopoda HOM05D005448 ORTHO05D006405 4.3e-14 82.0 130 36.9
HPP92_004716 Vanilla planifolia HOM05D005448 ORTHO05D006405 4.3e-14 82.0 135 38.5
AUR62021579 Chenopodium quinoa HOM05D005448 ORTHO05D006405 7.3e-14 81.3 125 40.0
TWI73G0142 Tripterygium wilfordii HOM05D005448 ORTHO05D006405 7.3e-14 81.3 92 47.8
Zm00001eb400320 Zea mays HOM05D005448 ORTHO05D006405 2.1e-13 79.7 126 38.1
PSO541G3212 Papaver somniferum HOM05D005448 ORTHO05D006405 4.8e-13 78.6 117 39.3
ClCG04G008840 Citrullus lanatus HOM05D005448 ORTHO05D006405 1.4e-12 77.0 132 44.7
Zm00001eb400290 Zea mays HOM05D005448 ORTHO05D006405 4.0e-12 75.5 126 37.3
arahy.Tifrunner.gnm1.ann1.6AQ98N Arachis hypogaea HOM05D005448 ORTHO05D006405 9.0e-12 74.3 139 39.6
Lsat_1_v5_gn_5_23221 Lactuca sativa HOM05D005448 ORTHO05D006405 9.0e-12 74.3 76 53.9
arahy.Tifrunner.gnm1.ann1.VF11UZ Arachis hypogaea HOM05D005448 ORTHO05D006405 1.2e-11 73.9 139 39.6
Sed0024402 Sechium edule HOM05D005448 ORTHO05D006405 2.6e-11 72.8 129 45.7
PSO675G8542 Papaver somniferum HOM05D005448 ORTHO05D006405 6.4e-10 68.2 130 34.6
A04p25650 Brassica napus HOM05D005448 ORTHO05D006405 1.1e-09 67.4 71 60.6
BraA04t18069Z Brassica rapa HOM05D005448 ORTHO05D006405 1.1e-09 67.4 71 60.6
vmacro16506 Vaccinium macrocarpon HOM05D005448 ORTHO05D006405 1.4e-09 67.0 181 34.3
Prupe.1G213800 Prunus persica HOM05D005448 ORTHO05D006405 2.4e-09 66.2 96 43.8
unitig_22.g5417 Utricularia gibba HOM05D005448 ORTHO05D006405 3.2e-09 65.9 140 35.0
Ah.02g113960 Amaranthus hybridus HOM05D005448 ORTHO05D006405 4.2e-09 65.5 151 32.5
DCAR_011598 Daucus carota HOM05D005448 ORTHO05D006405 1.2e-08 63.9 81 45.7
Mapoly0011s0155 Marchantia polymorpha HOM05D005448 ORTHO05D006405 4.6e-08 62.0 122 35.2
VMungo1215G2784 Vigna mungo HOM05D005448 ORTHO05D006405 1.0e-07 60.8 99 41.4
SEGI_17550 Sequoiadendron giganteum HOM05D005448 ORTHO05D006405 4.3e-06 55.5 99 37.4


User provided reference genes

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