Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 2016.9 1086 100.0
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1842.0 1070 92.1
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1788.1 1030 93.6
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1770.4 951 94.2
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1754.2 951 94.1
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1737.2 1122 85.8
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1724.5 952 93.3
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1724.5 952 93.3
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1722.6 952 93.2
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1704.5 1108 85.3
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1696.8 984 89.8
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1670.2 1097 83.8
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1468.4 1083 71.7
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1466.1 1088 72.9
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1464.1 1060 72.9
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1464.1 1085 71.8
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1463.0 1100 71.2
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1462.6 1098 71.7
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1458.0 1088 71.8
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1455.7 1081 72.5
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1451.0 1063 73.9
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1449.1 1093 71.5
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1445.3 1099 71.1
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1445.3 1099 71.1
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1444.5 1088 72.2
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1444.1 1088 72.4
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1443.3 1104 71.6
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1441.8 1087 72.8
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1441.0 1088 71.4
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1439.1 1096 71.6
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1436.0 1113 71.1
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1435.2 1073 70.8
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1433.7 1090 71.0
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1432.2 1090 70.7
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1426.4 1098 71.3
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1425.6 1034 73.9
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1425.6 1103 70.7
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1423.7 1082 71.1
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1423.3 1081 70.6
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1423.3 945 76.7
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1422.9 870 80.8
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1422.5 870 80.8
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1421.4 870 80.7
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1421.4 1078 72.1
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1418.3 1090 70.1
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1416.4 1081 70.2
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1415.2 869 81.0
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1414.1 1130 68.5
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1411.7 1084 69.1
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1410.2 1077 70.8
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1409.8 1090 69.7
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1409.8 1095 69.8
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1409.4 1104 69.4
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1406.7 1097 70.4
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1404.4 1078 70.8
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1401.0 1105 67.6
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1399.4 1093 68.6
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1396.7 1082 69.4
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1395.6 1063 70.1
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1394.0 1090 69.0
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1392.1 1097 68.9
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1388.6 980 72.1
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1378.6 1094 68.6
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1376.3 1056 69.2
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1369.8 1090 70.0
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1367.8 1124 67.0
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1367.4 1111 67.4
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1365.5 1062 71.3
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1365.5 1073 69.4
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1359.7 977 70.4
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1357.8 1070 68.7
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1357.0 1055 70.8
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1353.2 1095 67.5
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1352.0 896 75.3
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1343.9 1088 68.7
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1338.9 870 77.2
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1336.2 1085 66.4
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1330.1 1040 67.9
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1326.6 1182 63.2
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1323.9 1124 65.6
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1303.5 1118 65.6
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1303.1 1113 65.0
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1302.7 1063 66.4
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1295.4 1012 67.1
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1294.3 948 70.3
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1292.7 1094 64.2
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1291.6 1070 67.2
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1285.4 1150 63.7
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1263.4 1086 67.2
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1261.9 1090 63.1
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1250.7 1218 58.5
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1243.4 1067 65.5
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1233.8 926 69.0
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1231.9 1252 57.3
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1210.7 1052 61.9
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1207.6 1103 61.6
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 0.0e+00 1207.2 900 68.2
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1174.1 940 64.8
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 0.0e+00 1171.0 711 91.8
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1168.3 881 65.4
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 0.0e+00 1151.0 1082 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1109.4 945 60.7
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 5.3e-300 1034.6 693 74.5
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 6.9e-300 1034.2 691 74.5
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 5.1e-287 991.5 1084 54.7
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 4.4e-270 935.3 633 75.4
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 9.1e-268 927.5 743 61.2
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 2.8e-253 879.4 691 66.0
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.2e-248 864.0 545 77.6
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.8e-176 622.9 571 56.6
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 1.5e-169 601.3 318 94.3
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.4e-156 558.1 524 64.5
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 2.2e-152 544.3 445 62.7
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 1.3e-120 438.7 369 58.0
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-118 432.2 471 52.0
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 5.4e-111 406.8 400 64.2
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 6.6e-109 399.8 403 64.3
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 1.9e-87 328.6 1043 27.3
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 2.1e-86 325.1 249 64.3
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 1.1e-84 319.3 321 55.1
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.9e-84 318.5 269 61.0
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 4.0e-82 310.8 213 72.8
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 6.9e-82 310.1 277 58.5
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 4.6e-78 297.4 1061 26.2
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 9.6e-60 236.5 190 63.7
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 3.7e-59 234.6 135 80.0
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 5.5e-55 220.7 217 59.9
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 5.1e-53 214.2 386 36.8
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.2e-51 208.8 145 69.0
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 1.1e-42 179.9 243 47.7
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 9.1e-42 176.8 223 44.4
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 4.5e-41 174.5 99 81.8
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.2e-40 172.2 107 80.4
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 6.1e-38 164.1 104 69.2
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.0e-37 161.8 109 71.6
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 1.3e-35 156.4 104 70.2
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.2e-35 155.6 149 55.0
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.2e-33 149.8 480 28.3
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 3.5e-33 148.3 119 59.7
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.2e-31 141.4 119 55.5
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 5.5e-31 141.0 235 38.7
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.9e-29 134.8 93 74.2
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 1.5e-28 132.9 155 49.7
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 9.7e-28 130.2 155 49.0
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 8.2e-27 127.1 91 72.5
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.9e-24 118.6 108 59.3
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.9e-24 118.6 108 59.3
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.9e-24 118.6 108 59.3
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.4e-21 109.8 81 71.6
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 2.0e-20 105.9 97 67.0
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 1.3e-19 103.2 79 62.0
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 1.8e-18 99.4 78 70.5
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 3.1e-18 98.6 61 75.4
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.2e-17 96.7 133 48.1
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.6e-17 96.3 134 43.3
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.0e-17 95.9 59 78.0
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 4.5e-17 94.7 78 67.9
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.5e-17 94.7 61 67.2
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.5e-16 90.5 68 64.7
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 1.1e-15 90.1 47 97.9
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 4.2e-15 88.2 71 64.8
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-14 86.7 79 53.2
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 3.6e-14 85.1 49 79.6
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 8.8e-13 80.5 105 44.8
A07p06220 Brassica napus HOM05D003881 ORTHO05D004343 1.7e-11 76.3 77 55.8
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 3.1e-10 72.0 284 33.1
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.4e-10 71.2 192 37.0
Thhalv10005572m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 2.3e-08 65.9 52 73.1
PRCOL_00001933 Prasinoderma coloniale HOM05D026299 ORTHO05D028720 8.6e-08 63.9 157 26.8
SEGI_25041 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.1e-07 63.5 93 39.8
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 1.5e-07 63.2 66 51.5
MCO11G359 Micromonas commoda HOM05D026299 ORTHO05D028720 2.5e-07 62.4 228 22.4
BcaNung03874 Brassica carinata HOM05D001509 ORTHO05D001361 2.8e-06 58.9 164 28.0
BcaNung03870 Brassica carinata HOM05D001509 ORTHO05D001361 4.7e-06 58.2 176 26.7


User provided reference genes

Program Settings