Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 2.4e-177 625.5 356 100.0
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 8.6e-167 590.5 357 95.2
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.3e-162 576.6 355 92.4
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 2.1e-157 559.3 350 85.1
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 4.7e-157 558.1 355 83.9
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 8.1e-157 557.4 355 84.8
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.2e-153 545.0 341 85.6
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.2e-153 545.0 341 85.6
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.6e-152 543.1 346 82.9
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.5e-152 542.0 348 84.2
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.0e-151 540.4 357 82.4
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 2.9e-138 495.7 296 97.3
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 8.4e-138 494.2 302 95.4
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 8.1e-133 477.6 346 75.7
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 2.2e-130 469.5 357 78.2
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 2.2e-130 469.5 340 74.4
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 8.4e-130 467.6 355 71.3
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 1.6e-128 463.4 355 76.9
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 3.5e-128 462.2 356 71.6
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 6.0e-128 461.5 356 71.1
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.8e-127 459.9 348 77.6
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 3.0e-127 459.1 340 79.1
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 5.1e-127 458.4 354 69.8
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 5.1e-127 458.4 340 78.8
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 8.7e-127 457.6 341 72.4
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 8.7e-127 457.6 357 71.4
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 7.4e-126 454.5 356 70.5
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 7.4e-126 454.5 355 76.3
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 2.1e-125 453.0 350 70.9
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 1.1e-124 450.7 354 75.7
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 2.4e-124 449.5 354 73.4
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 6.9e-124 448.0 353 69.1
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 1.5e-123 446.8 341 76.2
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.9e-122 442.6 354 73.7
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 6.5e-122 441.4 356 68.8
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 6.5e-122 441.4 341 76.2
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 8.4e-122 441.0 339 73.7
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 1.1e-121 440.7 340 70.6
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 1.9e-121 439.9 345 69.6
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.5e-121 439.5 350 68.9
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.5e-121 439.5 341 75.7
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 3.2e-121 439.1 355 74.9
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 3.2e-121 439.1 350 68.9
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.2e-121 439.1 350 69.1
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 4.2e-121 438.7 367 72.5
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 7.2e-121 438.0 349 68.8
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 9.3e-121 437.6 354 72.9
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 1.6e-120 436.8 355 67.0
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 4.6e-120 435.3 355 67.3
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 6.1e-120 434.9 353 68.0
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 7.9e-120 434.5 349 69.3
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 2.3e-119 433.0 345 72.8
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 3.9e-119 432.2 341 69.8
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 6.7e-119 431.4 349 68.8
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 8.7e-119 431.0 434 57.8
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 1.1e-118 430.6 341 74.8
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 2.5e-118 429.5 351 70.9
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.6e-117 426.8 355 67.0
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 2.2e-117 426.4 334 74.9
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.1e-116 424.1 339 68.1
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 1.4e-116 423.7 351 72.1
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.8e-116 423.3 339 67.8
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 3.1e-116 422.5 334 76.3
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 3.1e-116 422.5 355 69.3
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 4.1e-116 422.2 346 67.6
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 6.9e-116 421.4 352 70.5
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 1.5e-115 420.2 351 64.4
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 1.5e-115 420.2 335 69.9
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 1.7e-114 416.8 351 63.5
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 2.9e-114 416.0 330 68.5
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 1.9e-113 413.3 323 75.5
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 3.2e-113 412.5 347 66.0
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 9.4e-113 411.0 354 70.3
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 2.1e-112 409.8 339 65.5
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 1.0e-111 407.5 354 69.8
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 5.1e-111 405.2 349 64.2
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.1e-110 404.1 334 69.2
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 1.5e-110 403.7 283 74.9
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 2.0e-110 403.3 392 61.0
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 2.5e-110 402.9 347 63.7
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 7.4e-110 401.4 297 76.4
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 2.8e-109 399.4 339 66.4
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 3.7e-109 399.1 329 66.6
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 8.2e-109 397.9 341 70.7
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 5.9e-107 391.7 362 61.6
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 3.8e-106 389.0 342 60.8
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 6.5e-106 388.3 363 68.0
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 9.4e-105 384.4 300 70.7
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.4e-103 380.6 312 71.2
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.5e-102 377.1 312 67.3
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 5.7e-102 375.2 335 63.0
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 2.8e-101 372.9 328 69.8
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.4e-100 370.5 339 62.5
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 2.4e-100 369.8 327 59.9
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 5.3e-100 368.6 339 66.7
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 5.9e-99 365.2 296 67.6
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 7.7e-99 364.8 297 69.4
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 1.0e-98 364.4 274 76.3
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 3.8e-98 362.5 353 65.4
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 3.6e-96 355.9 337 65.6
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 3.0e-95 352.8 407 57.2
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 1.1e-94 350.9 389 61.2
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 1.5e-94 350.5 339 61.1
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 3.3e-94 349.4 441 51.2
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 2.4e-92 343.2 229 77.7
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 2.9e-90 336.3 247 70.9
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 5.5e-89 332.0 334 61.1
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.8e-82 309.3 393 50.6
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 1.2e-80 304.3 340 51.8
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.2e-78 297.7 402 49.5
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 2.8e-77 293.1 235 68.9
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 3.7e-77 292.7 246 74.8
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.8e-72 276.6 233 67.4
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 4.0e-71 272.7 240 66.7
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 5.7e-70 268.9 197 76.1
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 5.4e-68 262.3 204 67.6
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 1.6e-67 260.8 217 65.4
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 7.8e-67 258.5 236 59.3
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 5.6e-65 252.3 223 61.4
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 6.8e-63 245.4 316 50.0
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 2.6e-62 243.4 324 42.6
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 4.1e-60 236.1 181 78.5
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 2.8e-56 223.4 334 41.9
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 7.5e-54 215.3 343 39.4
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.7e-50 204.1 148 70.9
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 1.5e-46 191.0 150 64.7
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.1e-40 168.7 126 69.0
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 1.1e-39 168.3 203 49.3
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 4.0e-39 166.4 144 67.4
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 1.4e-36 157.9 170 67.1
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 1.3e-29 134.8 349 30.1
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 2.2e-29 134.0 123 82.1
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.4e-23 114.8 168 45.2
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.5e-22 111.3 92 70.7
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 4.5e-22 109.8 112 59.8
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 4.9e-21 106.3 217 32.7
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 1.0e-18 98.6 111 71.2
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 1.4e-15 88.2 50 80.0
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 9.0e-15 85.5 78 59.0
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 4.9e-13 79.7 93 49.5
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 8.4e-13 79.0 53 77.4
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 1.8e-10 71.2 87 51.7


User provided reference genes

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