Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G43560 Arabidopsis lyrata HOM05D006080 ORTHO05D007382 3.7e-137 492.7 537 100.0
AT2G06000 Arabidopsis thaliana HOM05D006080 ORTHO05D007382 1.7e-126 457.2 537 96.1
Carub.0003s2711 Capsella rubella HOM05D006080 ORTHO05D007382 8.3e-113 411.8 216 90.7
CARHR103620 Cardamine hirsuta HOM05D006080 ORTHO05D007382 4.7e-108 396.0 219 87.2
Thhalv10002477m.g Eutrema salsugineum HOM05D006080 ORTHO05D007382 2.9e-105 386.7 213 87.8
Sp3g24500 Schrenkiella parvula HOM05D006080 ORTHO05D007382 1.3e-102 377.9 218 85.3
BcaC06g35949 Brassica carinata HOM05D006080 ORTHO05D007382 2.5e-101 373.6 213 84.0
C07p09380 Brassica napus HOM05D006080 ORTHO05D007382 2.3e-99 367.1 213 83.1
BolC7t41361H Brassica oleracea HOM05D006080 ORTHO05D007382 2.3e-99 367.1 213 83.1
BraA07t28425Z Brassica rapa HOM05D006080 ORTHO05D007382 1.2e-98 364.8 213 82.6
BcaB06g26878 Brassica carinata HOM05D006080 ORTHO05D007382 7.5e-98 362.1 211 82.5
A07p06330 Brassica napus HOM05D006080 ORTHO05D007382 4.9e-97 359.4 212 82.1
Aa31sc481G20 Aethionema arabicum HOM05D006080 ORTHO05D007382 2.6e-90 337.0 217 76.5
THA.LOC104815335 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 4.6e-87 326.2 211 73.9
THA.LOC104808885 Tarenaya hassleriana HOM05D006080 ORTHO05D007382 6.0e-79 299.3 212 69.8
Thecc.09G076600 Theobroma cacao HOM05D006080 ORTHO05D007382 8.7e-46 189.1 216 48.6
Gorai.013G224200 Gossypium raimondii HOM05D006080 ORTHO05D007382 4.1e-43 180.3 210 48.6
COL.COLO4_18095 Corchorus olitorius HOM05D006080 ORTHO05D007382 9.0e-43 179.1 210 49.0
Sed0020593 Sechium edule HOM05D006080 ORTHO05D007382 1.5e-42 178.3 212 47.6
Gohir.A13G190700 Gossypium hirsutum HOM05D006080 ORTHO05D007382 2.9e-41 174.1 210 47.6
Duzib168G1192 Durio zibethinus HOM05D006080 ORTHO05D007382 1.1e-40 172.2 218 45.4
Duzib187G1039 Durio zibethinus HOM05D006080 ORTHO05D007382 1.1e-40 172.2 199 47.7
Manes.09G158700 Manihot esculenta HOM05D006080 ORTHO05D007382 1.1e-40 172.2 199 49.2
Sabra06G0110900 Salix brachista HOM05D006080 ORTHO05D007382 1.4e-40 171.8 209 47.8
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.5e-40 171.0 191 48.2
Lj4g0003679 Lotus japonicus HOM05D006080 ORTHO05D007382 3.2e-40 170.6 183 49.2
MD02G1091700 Malus domestica HOM05D006080 ORTHO05D007382 5.5e-40 169.9 204 45.1
CiPaw.03G206100 Carya illinoinensis HOM05D006080 ORTHO05D007382 6.1e-39 166.4 200 46.0
QL02p058222 Quercus lobata HOM05D006080 ORTHO05D007382 7.9e-39 166.0 204 48.5
QL93p0100_0628 Quercus lobata HOM05D006080 ORTHO05D007382 7.9e-39 166.0 204 48.5
Phvul.009G114250 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 1.0e-38 165.6 186 47.3
Gorai.009G035900 Gossypium raimondii HOM05D006080 ORTHO05D007382 2.3e-38 164.5 218 41.7
MD15G1217800 Malus domestica HOM05D006080 ORTHO05D007382 2.3e-38 164.5 203 44.3
Potri.006G141800 Populus trichocarpa HOM05D006080 ORTHO05D007382 3.9e-38 163.7 202 47.0
VMungo1215G0155 Vigna mungo HOM05D006080 ORTHO05D007382 8.7e-38 162.5 214 41.6
Prupe.7G198600 Prunus persica HOM05D006080 ORTHO05D007382 1.5e-37 161.8 203 45.8
Phvul.011G177400 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 2.2e-36 157.9 186 46.2
FAN04G2899 Fragaria x ananassa HOM05D006080 ORTHO05D007382 2.4e-35 154.5 228 42.5
TPR.G30187 Trifolium pratense HOM05D006080 ORTHO05D007382 2.6e-34 151.0 184 44.0
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 5.9e-34 149.8 220 41.4
CSS0013189 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.0e-33 149.1 189 48.7
CSS0013911 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 1.0e-33 149.1 189 48.7
Ciclev10007804m.g Citrus clementina HOM05D006080 ORTHO05D007382 1.0e-33 149.1 206 42.7
Glyma.17G049100 Glycine max HOM05D006080 ORTHO05D007382 1.0e-33 149.1 205 42.9
arahy.Tifrunner.gnm1.ann1.YW7MJY Arachis hypogaea HOM05D006080 ORTHO05D007382 2.2e-33 147.9 205 41.5
Lalb_Chr07g0181201 Lupinus albus HOM05D006080 ORTHO05D007382 2.2e-33 147.9 183 44.8
Hund19654 Selenicereus undatus HOM05D006080 ORTHO05D007382 6.5e-33 146.4 224 39.7
SHI30075 Sapria himalayana HOM05D006080 ORTHO05D007382 1.1e-32 145.6 210 40.0
Lalb_Chr23g0276361 Lupinus albus HOM05D006080 ORTHO05D007382 1.9e-32 144.8 180 45.0
Glyma.06G019300 Glycine max HOM05D006080 ORTHO05D007382 3.2e-32 144.1 182 46.2
Phvul.009G021500 Phaseolus vulgaris HOM05D006080 ORTHO05D007382 3.2e-32 144.1 187 45.5
AUR62003304 Chenopodium quinoa HOM05D006080 ORTHO05D007382 4.2e-32 143.7 217 41.0
Cpa.g.sc28.32 Carica papaya HOM05D006080 ORTHO05D007382 5.5e-32 143.3 143 51.7
TWI14G1385 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 5.5e-32 143.3 200 43.5
Cfa002986 Carpinus fangiana HOM05D006080 ORTHO05D007382 7.2e-32 142.9 138 53.6
AUR62044025 Chenopodium quinoa HOM05D006080 ORTHO05D007382 7.2e-32 142.9 217 41.0
Aqoxy5G04299 Aquilegia oxysepala HOM05D006080 ORTHO05D007382 1.2e-31 142.1 221 40.7
Haze_26015 Corylus avellana HOM05D006080 ORTHO05D007382 1.6e-31 141.7 138 52.9
Nn7g36733 Nelumbo nucifera HOM05D006080 ORTHO05D007382 1.6e-31 141.7 186 43.5
CSS0008787 Camellia sinensis var. sinensis HOM05D006080 ORTHO05D007382 2.7e-31 141.0 193 47.2
Ah.07g204920 Amaranthus hybridus HOM05D002607 ORTHO05D008816 3.6e-31 140.6 183 42.6
PGR142G0728 Punica granatum HOM05D006080 ORTHO05D007382 3.6e-31 140.6 204 40.2
Rhsim12G0001600 Rhododendron simsii HOM05D006080 ORTHO05D007382 3.6e-31 140.6 189 43.9
Sc14g0000540 Simmondsia chinensis HOM05D006080 ORTHO05D007382 3.6e-31 140.6 212 41.0
Oeu000645.1 Olea europaea HOM05D006080 ORTHO05D007382 7.9e-31 139.4 199 40.2
arahy.Tifrunner.gnm1.ann1.3R1N4J Arachis hypogaea HOM05D006080 ORTHO05D007382 1.0e-30 139.0 188 42.6
Rhsim04G0100300 Rhododendron simsii HOM05D006080 ORTHO05D007382 1.8e-30 138.3 188 44.7
Glyma.04G019000 Glycine max HOM05D006080 ORTHO05D007382 2.3e-30 137.9 182 44.5
Lj9C313T10 Lonicera japonica HOM05D006080 ORTHO05D007382 2.3e-30 137.9 223 37.7
VMungo1309G1452 Vigna mungo HOM05D006080 ORTHO05D007382 3.0e-30 137.5 187 43.3
CANSAT56G0731 Cannabis sativa HOM05D006080 ORTHO05D007382 5.1e-30 136.7 138 52.2
vmacro00920 Vaccinium macrocarpon HOM05D006080 ORTHO05D007382 2.0e-29 134.8 189 43.9
MSTRG.16549 Avicennia marina HOM05D006080 ORTHO05D007382 4.4e-29 133.7 194 40.2
DCAR_029235 Daucus carota HOM05D006080 ORTHO05D007382 4.4e-29 133.7 231 36.4
TPR.G27762 Trifolium pratense HOM05D006080 ORTHO05D007382 5.7e-29 133.3 183 41.5
Medtr2g041700 Medicago truncatula HOM05D006080 ORTHO05D007382 7.4e-29 132.9 191 40.8
Lj6g0017816 Lotus japonicus HOM05D006080 ORTHO05D007382 9.7e-29 132.5 214 38.3
HanXRQChr05g0146121 Helianthus annuus HOM05D006080 ORTHO05D007382 2.2e-28 131.3 191 40.8
CsaV3_2G001150 Cucumis sativus L. HOM05D006080 ORTHO05D007382 2.8e-28 131.0 140 50.0
Psat1g133120 Pisum sativum HOM05D006080 ORTHO05D007382 4.8e-28 130.2 187 40.6
Migut.B00654 Erythranthe guttata HOM05D006080 ORTHO05D007382 6.3e-28 129.8 192 41.7
SalBow5G4726 Salvia bowleyana HOM05D006080 ORTHO05D007382 8.2e-28 129.4 226 37.6
Sc08g0008900 Simmondsia chinensis HOM05D006080 ORTHO05D007382 1.8e-27 128.3 211 38.9
FvH4_5g31880 Fragaria vesca HOM05D006080 ORTHO05D007382 4.1e-27 127.1 137 48.9
SalBow5G2015 Salvia bowleyana HOM05D006080 ORTHO05D007382 6.9e-27 126.3 226 37.2
SGA_v2.0_scaffold332G48925 Striga asiatica HOM05D006080 ORTHO05D007382 1.2e-26 125.6 224 36.6
CDE02G4345 Ceratophyllum demersum HOM05D006080 ORTHO05D007382 1.5e-26 125.2 185 42.2
ClCG11G001430 Citrullus lanatus HOM05D006080 ORTHO05D007382 2.0e-26 124.8 133 48.9
MELO3C004654.2 Cucumis melo HOM05D006080 ORTHO05D007382 3.4e-26 124.0 137 48.9
FAN08G1188 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.4e-26 124.0 145 46.9
FAN18G2998 Fragaria x ananassa HOM05D006080 ORTHO05D007382 3.4e-26 124.0 144 47.9
MBI19_g16224_MAGBIO Magnolia biondii HOM05D006080 ORTHO05D007382 1.0e-25 122.5 212 35.8
RcHm_v2.0_Chr7g0227901 Rosa chinensis HOM05D006080 ORTHO05D007382 5.0e-25 120.2 135 45.9
TWI59G0376 Tripterygium wilfordii HOM05D006080 ORTHO05D007382 1.1e-24 119.0 135 46.7
AUR62016281 Chenopodium quinoa HOM05D006080 ORTHO05D007382 1.4e-24 118.6 154 42.9
Lsat_1_v5_gn_2_12120 Lactuca sativa HOM05D006080 ORTHO05D007382 5.5e-24 116.7 179 37.4
HanXRQChr10g0292001 Helianthus annuus HOM05D006080 ORTHO05D007382 1.2e-23 115.5 185 39.5
Medtr4g040410 Medicago truncatula HOM05D006080 ORTHO05D007382 1.2e-23 115.5 149 40.9
CAN.G1702.1 Capsicum annuum HOM05D006080 ORTHO05D007382 2.1e-23 114.8 197 37.6
Ca_02204_v3 Cicer arietinum L. HOM05D006080 ORTHO05D007382 6.1e-23 113.2 179 38.5
Actinidia00227 Actinidia chinensis HOM05D006080 ORTHO05D007382 3.9e-22 110.5 140 45.7
Solyc01g104630.3 Solanum lycopersicum HOM05D006080 ORTHO05D007382 5.2e-22 110.2 194 38.1
Sopen01g047140 Solanum pennellii HOM05D006080 ORTHO05D007382 6.7e-22 109.8 194 37.1
PGSC0003DMG401029758 Solanum tuberosum HOM05D006080 ORTHO05D007382 8.8e-22 109.4 194 38.1
Atru.BG.18.p Acer truncatum HOM05D006080 ORTHO05D007382 1.5e-21 108.6 92 57.6
Cc02_g22120 Coffea canephora HOM05D006080 ORTHO05D007382 1.5e-21 108.6 167 36.5
TAR383G0956 Trochodendron aralioides HOM05D006080 ORTHO05D007382 7.4e-21 106.3 133 41.4
Nitab4.5_0000249g0340 Nicotiana tabacum HOM05D006080 ORTHO05D007382 2.2e-20 104.8 195 36.9
Nitab4.5_0009570g0010 Nicotiana tabacum HOM05D006080 ORTHO05D007382 2.4e-19 101.3 195 36.4
SalBow6G3562 Salvia bowleyana HOM05D006080 ORTHO05D007382 5.3e-19 100.1 233 31.8
SalBow6G5833 Salvia bowleyana HOM05D006080 ORTHO05D007382 5.3e-19 100.1 233 31.8
Eucgr.C00814 Eucalyptus grandis HOM05D006080 ORTHO05D007382 2.0e-18 98.2 112 45.5
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 4.5e-18 97.1 182 37.4
ECA238G3807 Erigeron canadensis HOM05D006080 ORTHO05D007382 3.8e-17 94.0 161 37.9
ATR0598G196 Amborella trichopoda HOM05D006080 ORTHO05D007382 4.7e-15 87.0 148 37.2
Gohir.D13G196370 Gossypium hirsutum HOM05D006080 ORTHO05D007382 1.5e-13 82.0 103 45.6
ATR0820G217 Amborella trichopoda HOM05D005973 ORTHO05D007285 6.5e-09 66.6 205 25.4
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 2.5e-08 64.7 165 29.1
Peaxi162Scf01290g00029 Petunia axillaris HOM05D006080 ORTHO05D007382 1.2e-07 62.4 110 39.1
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 1.6e-07 62.0 155 25.2
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 3.6e-07 60.8 155 26.5
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 6.1e-07 60.1 155 24.5
Zm00001eb058140 Zea mays HOM05D000424 ORTHO05D000355 6.1e-07 60.1 153 28.1
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 1.8e-06 58.5 151 24.5
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.8e-06 58.5 146 28.8
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 2.3e-06 58.2 155 23.9
Eucgr.F03831 Eucalyptus grandis HOM05D000424 ORTHO05D000355 3.0e-06 57.8 151 24.5
Sed0023429 Sechium edule HOM05D000424 ORTHO05D000355 3.0e-06 57.8 151 25.8
ClCG08G005980 Citrullus lanatus HOM05D000424 ORTHO05D000355 4.0e-06 57.4 151 26.5
Potri.001G139200 Populus trichocarpa HOM05D006819 ORTHO05D008763 4.0e-06 57.4 141 24.8
AUR62016357 Chenopodium quinoa HOM05D006819 ORTHO05D008763 5.2e-06 57.0 142 31.0
Duzib093G0352 Durio zibethinus HOM05D000424 ORTHO05D000355 5.2e-06 57.0 151 25.2
Duzib093G1185 Durio zibethinus HOM05D000424 ORTHO05D000355 5.2e-06 57.0 151 25.2
MELO3C010658.2 Cucumis melo HOM05D000424 ORTHO05D000355 6.8e-06 56.6 151 25.2
CsaV3_6G034100 Cucumis sativus L. HOM05D000424 ORTHO05D000355 6.8e-06 56.6 151 25.2
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 6.8e-06 56.6 115 30.4
MD05G1026300 Malus domestica HOM05D000424 ORTHO05D000355 6.8e-06 56.6 152 26.3
RhsimUnG0134300 Rhododendron simsii HOM05D000424 ORTHO05D000355 6.8e-06 56.6 151 25.8
RhsimUnG0143400 Rhododendron simsii HOM05D000424 ORTHO05D000355 6.8e-06 56.6 151 25.8
Sabra01G0108200 Salix brachista HOM05D006819 ORTHO05D008763 6.8e-06 56.6 141 24.8


User provided reference genes

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