Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 5.9e-68 260.8 134 100.0
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 5.5e-66 254.2 134 97.0
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.6e-60 235.3 134 91.8
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 8.0e-57 223.8 134 87.3
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.8e-56 222.6 133 88.0
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 2.3e-56 222.2 133 88.0
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 4.0e-56 221.5 134 86.6
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.5e-55 219.5 135 87.4
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.5e-55 219.5 135 87.4
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 5.7e-55 217.6 134 85.8
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 9.8e-55 216.9 133 85.7
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 9.8e-55 216.9 133 85.7
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 9.8e-55 216.9 133 85.7
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 8.3e-54 213.8 134 85.8
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 8.3e-54 213.8 134 85.8
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 2.9e-51 205.3 134 82.1
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 3.8e-51 204.9 133 82.0
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 9.4e-50 200.3 133 78.9
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 4.7e-49 198.0 132 76.5
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 5.7e-47 191.0 134 76.9
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 9.8e-47 190.3 133 78.2
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.8e-46 188.7 132 77.3
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.7e-46 188.3 132 73.5
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 4.9e-46 188.0 133 77.4
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 8.3e-46 187.2 134 77.6
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 8.3e-46 187.2 134 76.9
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 1.4e-45 186.4 134 78.4
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.8e-45 186.0 134 74.6
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.8e-45 186.0 134 74.6
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 1.8e-45 186.0 133 76.7
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.8e-45 186.0 132 75.8
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.8e-45 186.0 132 75.8
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.8e-45 186.0 133 76.7
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 2.4e-45 185.7 134 71.6
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.1e-45 185.3 133 74.4
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 3.1e-45 185.3 132 78.0
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 4.1e-45 184.9 134 74.6
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.6e-44 183.0 134 73.1
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 2.0e-44 182.6 132 75.8
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.0e-44 182.6 131 74.0
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 2.0e-44 182.6 132 77.3
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 2.7e-44 182.2 133 74.4
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 2.7e-44 182.2 133 74.4
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 2.7e-44 182.2 133 75.9
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 2.7e-44 182.2 132 76.5
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 2.7e-44 182.2 132 76.5
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 2.7e-44 182.2 130 74.6
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 3.5e-44 181.8 132 75.8
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 3.5e-44 181.8 117 79.5
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 7.7e-44 180.6 132 75.0
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 7.7e-44 180.6 134 71.6
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.0e-43 180.3 133 73.7
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.0e-43 180.3 132 75.0
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.3e-43 179.9 132 74.2
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.3e-43 179.9 132 77.3
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.7e-43 179.5 131 74.8
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.7e-43 179.5 117 78.6
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 2.3e-43 179.1 132 76.5
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.9e-43 178.7 117 76.1
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 3.8e-43 178.3 136 75.0
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 5.0e-43 177.9 134 69.4
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 5.0e-43 177.9 134 73.9
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 5.0e-43 177.9 134 73.9
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 6.6e-43 177.6 132 72.7
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 1.9e-42 176.0 132 72.7
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 2.5e-42 175.6 121 72.7
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.5e-42 175.6 134 70.1
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 4.2e-42 174.9 132 72.7
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 4.2e-42 174.9 132 72.7
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 9.5e-42 173.7 132 71.2
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.6e-41 172.9 132 73.5
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.8e-41 172.2 130 73.8
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 2.8e-41 172.2 119 76.5
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 3.6e-41 171.8 132 74.2
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 6.1e-41 171.0 135 73.3
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 6.1e-41 171.0 132 72.7
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.0e-40 170.2 140 67.9
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 1.4e-40 169.9 132 69.7
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.4e-40 169.9 132 69.7
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.4e-40 169.9 130 73.1
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.4e-40 169.9 134 71.6
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 1.4e-40 169.9 131 73.3
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 2.3e-40 169.1 136 69.9
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.0e-40 168.7 132 72.7
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 4.0e-40 168.3 120 73.3
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 4.0e-40 168.3 134 70.9
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 4.0e-40 168.3 117 73.5
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 5.2e-40 167.9 134 71.6
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 6.8e-40 167.5 132 73.5
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 6.8e-40 167.5 134 70.9
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 6.8e-40 167.5 135 71.1
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 6.8e-40 167.5 132 69.7
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 8.9e-40 167.2 135 71.9
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 1.2e-39 166.8 131 67.9
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 1.2e-39 166.8 134 69.4
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 1.5e-39 166.4 134 72.4
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 2.6e-39 165.6 118 72.9
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 2.6e-39 165.6 132 72.7
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 4.4e-39 164.9 137 70.8
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 4.4e-39 164.9 111 76.6
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.2e-38 162.5 109 81.7
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.9e-38 161.4 133 66.9
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.9e-38 161.4 133 66.9
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.9e-38 161.4 133 66.9
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 4.9e-38 161.4 119 73.1
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 6.4e-38 161.0 111 77.5
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 8.3e-38 160.6 140 68.6
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.1e-37 160.2 111 77.5
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.8e-37 159.5 130 71.5
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.1e-37 158.3 134 64.9
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 4.1e-37 158.3 134 64.9
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 5.4e-37 157.9 132 69.7
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 5.4e-37 157.9 139 67.6
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 9.2e-37 157.1 126 69.0
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.2e-36 156.8 134 64.9
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.2e-36 156.8 111 74.8
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.6e-36 156.4 133 66.2
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 2.7e-36 155.6 111 74.8
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.6e-36 154.8 139 68.3
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 5.9e-36 154.5 104 80.8
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 7.8e-36 154.1 111 73.9
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 2.3e-35 152.5 111 70.3
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.9e-35 151.8 99 80.8
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 6.6e-35 151.0 115 72.2
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 8.6e-35 150.6 91 82.4
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.5e-34 149.1 111 73.0
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 3.3e-34 148.7 91 84.6
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.2e-33 146.7 116 68.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.8e-32 142.9 77 92.2
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.8e-32 141.0 132 64.4
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 2.9e-30 135.6 78 88.5
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 4.9e-30 134.8 87 80.5
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.4e-30 134.4 135 62.2
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 3.2e-29 132.1 84 78.6
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.2e-29 132.1 75 85.3
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 9.2e-29 130.6 133 56.4
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 3.5e-28 128.6 112 63.4
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 5.6e-26 121.3 119 55.5
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.6e-25 119.8 69 88.4
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.6e-25 119.8 69 88.4
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 1.1e-24 117.1 121 59.5
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 1.8e-24 116.3 126 54.8
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.3e-24 115.9 95 66.3
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 2.6e-23 112.5 135 54.8
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 3.4e-23 112.1 98 63.3
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 4.4e-23 111.7 97 66.0
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.2e-20 103.6 95 65.3
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 3.0e-19 99.0 98 54.1
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 6.6e-19 97.8 117 52.1
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.7e-17 91.7 46 100.0
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.2e-16 88.2 105 54.3
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 8.9e-16 87.4 71 62.0
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 2.6e-15 85.9 91 51.6
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 7.1e-13 77.8 65 58.5


User provided reference genes

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