Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.8e-31 138.7 72 100.0
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.9e-26 120.9 69 92.8
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.5e-25 119.0 69 88.4
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.9e-25 118.6 69 88.4
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 8.2e-24 113.2 66 87.9
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 9.0e-23 109.8 69 81.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 3.4e-22 107.8 68 77.9
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 4.5e-22 107.5 69 78.3
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.0e-21 106.3 69 78.3
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 3.8e-21 104.4 69 76.8
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 6.5e-21 103.6 69 76.8
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 6.5e-21 103.6 69 76.8
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 6.5e-21 103.6 69 76.8
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.4e-20 102.4 69 75.4
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 3.5e-19 97.8 70 74.3
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 3.5e-19 97.8 70 74.3
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 3.5e-19 97.8 70 74.3
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 3.5e-19 97.8 70 74.3
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.0e-18 94.7 69 69.6
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 6.7e-18 93.6 69 72.5
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.5e-17 92.4 64 75.0
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 4.3e-17 90.9 63 73.0
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 5.7e-17 90.5 69 66.7
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 7.4e-17 90.1 69 71.0
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 7.4e-17 90.1 69 71.0
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 7.4e-17 90.1 69 71.0
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 7.4e-17 90.1 69 71.0
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 9.7e-17 89.7 63 73.0
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 9.7e-17 89.7 63 73.0
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 9.7e-17 89.7 61 72.1
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 9.7e-17 89.7 70 70.0
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 1.3e-16 89.4 69 69.6
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.3e-16 89.4 69 69.6
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 1.3e-16 89.4 70 68.6
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.3e-16 89.4 59 74.6
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.2e-16 88.6 69 72.5
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 2.2e-16 88.6 57 75.4
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 2.2e-16 88.6 69 71.0
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.2e-16 88.6 69 69.6
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 2.2e-16 88.6 69 66.7
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.8e-16 88.2 61 72.1
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.8e-16 88.2 69 66.7
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 2.8e-16 88.2 69 69.6
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 3.7e-16 87.8 69 72.5
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 4.8e-16 87.4 69 71.0
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 4.8e-16 87.4 71 67.6
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 6.3e-16 87.0 69 69.6
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 6.3e-16 87.0 69 69.6
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 6.3e-16 87.0 69 69.6
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 6.3e-16 87.0 67 67.2
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 6.3e-16 87.0 69 69.6
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 6.3e-16 87.0 70 67.1
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 6.3e-16 87.0 69 63.8
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 6.3e-16 87.0 69 69.6
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 8.2e-16 86.7 70 67.1
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.1e-15 86.3 69 71.0
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.1e-15 86.3 69 68.1
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.1e-15 86.3 70 65.7
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 1.1e-15 86.3 53 79.2
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.4e-15 85.9 69 68.1
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 1.4e-15 85.9 65 69.2
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 1.4e-15 85.9 71 66.2
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.4e-15 85.9 53 81.1
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.4e-15 85.9 53 81.1
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 1.4e-15 85.9 53 77.4
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.4e-15 85.9 64 65.6
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.8e-15 85.5 69 68.1
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.8e-15 85.5 54 77.8
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 2.4e-15 85.1 65 69.2
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 2.4e-15 85.1 65 69.2
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 2.4e-15 85.1 53 79.2
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 3.1e-15 84.7 68 67.6
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 3.1e-15 84.7 69 68.1
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 3.1e-15 84.7 69 66.7
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 4.1e-15 84.3 53 75.5
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 4.1e-15 84.3 53 75.5
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 4.1e-15 84.3 69 68.1
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 4.1e-15 84.3 69 68.1
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 5.3e-15 84.0 69 63.8
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 5.3e-15 84.0 53 79.2
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 6.9e-15 83.6 69 68.1
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 6.9e-15 83.6 69 68.1
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 6.9e-15 83.6 69 68.1
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 6.9e-15 83.6 69 62.3
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 6.9e-15 83.6 53 73.6
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 6.9e-15 83.6 53 79.2
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 9.0e-15 83.2 53 75.5
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 9.0e-15 83.2 69 68.1
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 9.0e-15 83.2 69 68.1
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 9.0e-15 83.2 63 66.7
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.2e-14 82.8 61 68.9
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.2e-14 82.8 61 68.9
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.2e-14 82.8 53 77.4
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.2e-14 82.8 61 68.9
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.2e-14 82.8 69 65.2
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.5e-14 82.4 69 65.2
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 1.5e-14 82.4 69 59.4
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 1.5e-14 82.4 60 71.7
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 1.5e-14 82.4 53 75.5
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 2.0e-14 82.0 53 71.7
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 2.0e-14 82.0 61 70.5
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.0e-14 82.0 69 65.2
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 2.0e-14 82.0 73 65.8
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.0e-14 82.0 53 75.5
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.0e-14 82.0 53 75.5
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.0e-14 82.0 53 75.5
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.0e-14 82.0 64 67.2
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.0e-14 82.0 61 63.9
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.0e-14 82.0 61 63.9
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.6e-14 81.6 51 76.5
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 3.4e-14 81.3 69 65.2
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 4.5e-14 80.9 69 65.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.5e-14 80.9 53 75.5
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 4.5e-14 80.9 69 63.8
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 5.9e-14 80.5 61 63.9
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 5.9e-14 80.5 61 65.6
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 5.9e-14 80.5 53 75.5
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 7.7e-14 80.1 57 70.2
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 7.7e-14 80.1 69 62.3
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 7.7e-14 80.1 69 63.8
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 1.0e-13 79.7 69 62.3
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.0e-13 79.7 61 63.9
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 1.0e-13 79.7 69 62.3
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 1.3e-13 79.3 47 80.9
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.7e-13 79.0 51 76.5
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 2.2e-13 78.6 53 71.7
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 2.2e-13 78.6 63 66.7
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.8e-13 77.8 50 76.0
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 3.8e-13 77.8 69 65.2
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 5.0e-13 77.4 54 70.4
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 8.5e-13 76.6 56 69.6
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 8.5e-13 76.6 64 67.2
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.9e-12 75.5 64 65.6
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 2.5e-12 75.1 68 60.3
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 1.6e-11 72.4 43 81.4
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 1.6e-11 72.4 46 76.1
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 2.7e-11 71.6 46 73.9
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 6.1e-11 70.5 43 79.1
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.0e-10 69.7 43 76.7
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 6.7e-10 67.0 54 63.0
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.7e-10 67.0 53 64.2
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.1e-09 66.2 57 63.2
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 3.3e-09 64.7 44 65.9
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 3.7e-08 61.2 39 79.5
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 6.3e-08 60.5 68 55.9
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 8.2e-08 60.1 65 58.5
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.4e-07 59.3 53 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 5.3e-07 57.4 53 52.8
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 5.3e-07 57.4 57 52.6
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 6.9e-07 57.0 53 60.4


User provided reference genes

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