Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 3.9e-229 797.7 391 100.0
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 6.9e-210 733.8 393 91.9
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 1.6e-190 669.5 393 85.8
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.8e-178 629.4 387 81.1
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 3.8e-176 621.7 401 78.8
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 9.4e-175 617.1 409 77.8
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 5.9e-161 571.2 403 75.7
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.3e-160 570.1 402 75.1
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 3.3e-159 565.5 404 74.5
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 3.3e-159 565.5 404 74.5
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 3.3e-159 565.5 404 74.5
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 5.6e-159 564.7 414 73.2
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 1.2e-140 503.8 431 64.5
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 3.9e-136 488.8 370 66.8
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.5e-135 486.1 369 65.9
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 9.6e-135 484.2 355 66.8
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 1.2e-134 483.8 399 66.4
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 3.6e-134 482.3 369 67.2
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 5.2e-133 478.4 355 66.2
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 6.8e-133 478.0 346 67.9
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.2e-132 477.2 349 65.6
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 2.0e-132 476.5 318 71.7
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 2.6e-132 476.1 327 71.3
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 4.9e-131 471.9 361 64.3
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 7.1e-130 468.0 344 68.3
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 1.2e-129 467.2 316 70.9
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.8e-129 464.5 377 62.6
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 1.3e-128 463.8 375 62.7
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 1.3e-128 463.8 360 62.5
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 9.6e-127 457.6 323 69.0
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 9.6e-127 457.6 358 64.8
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.6e-126 456.8 315 68.6
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 2.1e-126 456.4 375 61.9
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.1e-125 454.1 321 69.2
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.8e-125 453.4 348 66.4
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 2.4e-125 453.0 314 71.3
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 2.6e-124 449.5 320 68.4
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 3.4e-124 449.1 354 64.7
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 5.8e-124 448.4 327 67.3
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 7.6e-124 448.0 327 67.3
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 9.9e-124 447.6 336 66.4
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.3e-123 447.2 306 68.6
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.3e-123 447.2 343 65.6
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.7e-123 446.8 315 69.2
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 3.8e-123 445.7 319 66.8
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.9e-123 445.3 302 69.2
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 1.1e-122 444.1 313 70.0
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.4e-122 443.0 321 67.6
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.2e-122 442.6 304 68.1
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 5.4e-122 441.8 310 68.7
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 7.1e-122 441.4 305 69.5
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 9.3e-122 441.0 331 63.1
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.3e-120 437.2 329 65.0
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 2.3e-120 436.4 362 60.5
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.9e-120 435.6 338 64.2
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.1e-120 435.3 296 69.9
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 6.6e-120 434.9 332 65.1
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 3.3e-119 432.6 329 65.3
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 3.3e-119 432.6 251 78.5
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 4.3e-119 432.2 314 66.9
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 5.6e-119 431.8 307 68.4
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.3e-118 430.6 352 60.2
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 1.3e-118 430.6 307 68.1
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.8e-118 429.5 293 70.0
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 2.8e-118 429.5 382 57.6
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 4.8e-118 428.7 325 64.6
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.8e-117 426.8 295 69.5
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 2.4e-117 426.4 304 66.8
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 2.4e-117 426.4 336 62.5
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 5.3e-117 425.2 341 62.5
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 1.5e-116 423.7 326 62.9
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 2.2e-115 419.9 346 61.6
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 8.4e-115 417.9 338 63.6
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 7.1e-114 414.8 328 63.4
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 1.6e-113 413.7 403 54.3
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 2.1e-113 413.3 335 62.1
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.0e-112 411.0 321 62.6
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 6.7e-112 408.3 312 67.3
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 1.5e-111 407.1 353 59.8
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.9e-111 406.8 245 76.7
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 3.3e-111 406.0 303 66.0
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 2.1e-110 403.3 323 63.8
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 2.0e-108 396.7 370 55.7
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 3.8e-107 392.5 308 63.0
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.0e-104 384.4 321 61.4
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.3e-102 377.5 344 57.8
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 6.3e-102 375.2 309 59.2
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.1e-101 374.4 322 59.3
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 9.3e-98 361.3 310 58.4
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.2e-97 360.9 367 54.2
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 6.7e-96 355.1 302 60.9
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 8.7e-96 354.8 315 58.1
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.8e-94 349.7 231 70.6
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 3.8e-91 339.3 192 78.6
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 2.7e-89 333.2 386 46.6
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 5.1e-88 328.9 278 57.6
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 2.6e-84 316.6 239 64.0
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.7e-83 313.9 193 76.2
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 4.7e-81 305.8 280 54.6
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.8e-80 303.9 288 51.4
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 2.2e-75 287.0 271 52.0
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 6.5e-75 285.4 292 47.6
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.0e-71 273.9 372 46.5
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 5.7e-71 272.3 196 62.8
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 2.7e-65 253.4 230 52.2
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 9.5e-58 228.4 281 47.7
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 3.6e-57 226.5 130 76.2
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 8.0e-57 225.3 123 81.3
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 4.5e-52 209.5 172 62.8
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 8.9e-48 195.3 164 59.1
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 2.0e-47 194.1 114 79.8
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 7.5e-47 192.2 112 80.4
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.9e-42 177.6 193 51.8
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 4.9e-38 162.9 271 39.1
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.4e-37 161.4 183 51.4
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.0e-35 153.7 173 52.0
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 5.0e-35 152.9 198 40.4
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.5e-34 150.6 97 72.2
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 3.9e-27 126.7 62 87.1
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.8e-25 120.6 320 28.4
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 1.7e-22 111.3 98 59.2
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 3.8e-22 110.2 73 69.9
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 4.1e-21 106.7 69 65.2
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 7.8e-20 102.4 61 80.3
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 8.6e-19 99.0 195 36.9
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.1e-18 98.6 63 74.6
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.2e-17 95.1 78 59.0
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.6e-17 93.6 142 42.3
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 6.2e-17 92.8 77 59.7
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 4.0e-16 90.1 184 35.9
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 9.9e-15 85.5 145 37.9
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 2.7e-12 77.4 53 67.9
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 3.3e-10 70.5 109 38.5
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 9.6e-10 68.9 146 36.3
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 1.4e-08 65.1 40 77.5
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 6.9e-08 62.8 40 70.0


User provided reference genes

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