Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.5e-242 841.6 422 100.0
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.4e-184 649.0 318 98.7
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 5.4e-184 647.9 343 92.1
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 8.6e-174 614.0 318 94.0
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.1e-171 607.1 335 88.1
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 5.2e-171 604.7 341 86.2
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 4.4e-170 601.7 339 86.4
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 2.9e-169 599.0 339 86.4
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 2.9e-169 599.0 339 86.4
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 3.5e-167 592.0 339 85.5
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 4.7e-164 581.6 318 88.4
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-162 577.0 318 87.7
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 4.4e-162 575.1 318 86.8
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 7.6e-162 574.3 339 82.6
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 2.2e-161 572.8 339 82.3
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 1.4e-160 570.1 332 83.4
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 2.4e-160 569.3 339 82.0
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 4.2e-160 568.5 333 81.7
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 5.4e-160 568.2 318 86.5
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 9.9e-154 547.4 318 82.7
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 2.2e-145 519.6 316 76.6
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 2.4e-144 516.2 316 76.3
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 7.9e-143 511.1 321 74.1
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 1.8e-142 510.0 315 74.9
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 3.0e-142 509.2 321 74.1
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 6.7e-142 508.1 317 74.4
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 1.1e-141 507.3 316 74.7
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.9e-141 506.5 321 73.8
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.5e-141 506.1 320 73.8
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 4.3e-141 505.4 316 75.3
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 7.4e-141 504.6 316 74.4
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 9.6e-141 504.2 316 75.6
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.3e-140 503.8 320 74.7
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 2.1e-140 503.1 322 74.5
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 2.1e-140 503.1 316 73.1
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 6.2e-140 501.5 323 73.1
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 1.1e-139 500.7 318 74.2
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.4e-139 499.6 315 72.7
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 3.1e-139 499.2 319 74.3
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 4.0e-139 498.8 315 72.7
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 1.5e-138 496.9 315 74.6
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 1.5e-138 496.9 317 73.2
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 2.6e-138 496.1 316 75.0
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.4e-138 495.7 315 73.3
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 4.5e-138 495.4 315 73.3
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 4.5e-138 495.4 316 74.4
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 4.5e-138 495.4 316 74.4
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 7.6e-138 494.6 361 68.7
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 1.0e-137 494.2 316 74.4
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.0e-137 494.2 315 71.7
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 6.5e-137 491.5 361 67.9
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.4e-136 490.3 338 69.5
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 2.5e-136 489.6 346 70.5
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 2.5e-136 489.6 315 71.1
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 3.2e-136 489.2 321 73.5
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 4.2e-136 488.8 316 71.5
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 5.5e-136 488.4 315 72.7
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 9.3e-136 487.6 320 71.6
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 3.5e-135 485.7 315 72.1
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.6e-135 485.3 317 70.7
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 7.9e-135 484.6 324 70.7
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 2.3e-134 483.0 303 74.9
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.3e-134 483.0 315 71.1
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 3.0e-134 482.6 315 69.5
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.0e-134 482.6 333 68.5
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 5.1e-134 481.9 320 71.9
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 8.7e-134 481.1 319 71.5
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.1e-133 480.7 317 72.2
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 3.3e-133 479.2 336 67.9
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 2.2e-132 476.5 369 63.4
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 2.2e-132 476.5 315 70.8
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 2.2e-132 476.5 315 68.9
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.8e-132 476.1 315 69.5
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 4.8e-132 475.3 317 69.7
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 6.3e-132 474.9 318 69.8
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 6.3e-132 474.9 317 70.3
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 6.3e-132 474.9 318 69.8
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 6.3e-132 474.9 318 69.2
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 8.2e-132 474.6 318 69.5
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 8.2e-132 474.6 318 69.2
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 1.1e-131 474.2 380 59.5
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.1e-131 474.2 318 69.5
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.1e-131 474.2 315 68.9
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 1.8e-131 473.4 317 68.8
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 3.1e-131 472.6 315 67.9
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 3.1e-131 472.6 319 69.0
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 5.3e-131 471.9 316 69.6
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.3e-131 471.9 316 69.3
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 6.9e-131 471.5 324 68.8
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 9.0e-131 471.1 317 69.7
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.6e-130 469.5 317 69.4
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.4e-130 469.2 313 69.3
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 4.5e-130 468.8 367 61.9
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.9e-129 466.1 316 69.6
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 3.8e-129 465.7 315 70.5
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.1e-128 464.2 315 67.6
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 2.5e-128 463.0 316 68.7
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 3.2e-128 462.6 315 68.6
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 3.2e-128 462.6 315 66.3
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.5e-128 461.8 315 66.3
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 3.6e-127 459.1 322 68.3
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 6.1e-127 458.4 317 67.5
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.4e-126 457.2 322 65.5
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.8e-126 456.8 318 69.5
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 5.1e-126 455.3 315 67.6
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 2.5e-125 453.0 315 66.0
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.3e-124 450.7 321 66.4
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.1e-123 447.6 315 67.3
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.5e-122 443.7 315 65.1
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 2.0e-122 443.4 318 65.7
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.5e-122 442.2 329 65.3
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 4.5e-122 442.2 389 57.1
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 5.0e-121 438.7 416 55.5
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 9.4e-120 434.5 292 66.8
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.0e-118 431.0 290 70.3
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 8.8e-118 427.9 336 61.0
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.6e-117 426.4 315 65.7
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.7e-117 425.2 315 62.9
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 5.7e-117 425.2 315 63.2
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 2.0e-114 416.8 239 84.9
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 4.5e-114 415.6 328 60.7
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 5.9e-114 415.2 268 72.4
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.2e-113 413.3 319 64.3
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 2.9e-113 412.9 317 63.4
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.9e-112 410.2 284 69.7
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.2e-111 407.5 289 69.2
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 6.7e-110 401.7 315 60.3
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 1.2e-106 391.0 332 57.5
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.0e-102 377.9 321 58.9
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.8e-102 377.1 337 54.9
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 2.3e-102 376.7 318 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 3.3e-101 372.9 317 56.8
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 5.7e-101 372.1 319 58.6
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 3.1e-99 366.3 321 56.4
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 2.7e-95 353.2 305 58.7
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 5.2e-94 349.0 315 54.6
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 2.0e-93 347.1 243 68.7
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 6.3e-92 342.0 292 57.5
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 1.5e-88 330.9 353 47.9
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 3.4e-85 319.7 209 78.9
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 9.5e-80 301.6 211 72.5
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 9.5e-80 301.6 199 72.4
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 2.3e-73 280.4 182 72.5
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 2.3e-73 280.4 218 60.1
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.7e-65 254.2 165 72.1
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.9e-64 250.8 305 47.2
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 4.1e-59 233.0 151 75.5
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 6.2e-55 219.2 144 71.5
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 4.2e-51 206.5 140 66.4
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 5.6e-48 196.1 148 60.8
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 1.7e-44 184.5 127 78.0
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 1.4e-43 181.4 96 85.4
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.1e-42 177.6 123 66.7
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 5.6e-40 169.5 124 65.3
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.0e-37 161.0 107 67.3
AL3G42510 Arabidopsis lyrata HOM05D000081 ORTHO05D000036 2.4e-35 154.1 91 96.7
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.8e-33 147.9 93 74.2
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 4.0e-30 136.7 69 87.0
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 1.2e-29 135.2 91 67.0
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 8.7e-25 119.0 75 65.3
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 1.9e-24 117.9 72 81.9
AT2G04880 Arabidopsis thaliana HOM05D000081 ORTHO05D000036 4.3e-24 116.7 89 78.7
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 3.7e-23 113.6 74 68.9
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 6.2e-23 112.8 183 39.9
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 8.2e-23 112.5 66 72.7
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 5.8e-21 106.3 86 55.8
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.1e-19 102.1 57 73.7
Carub.0003s2648 Capsella rubella HOM05D000081 ORTHO05D000036 1.6e-15 88.2 113 58.4
CARHR102900 Cardamine hirsuta HOM05D000081 ORTHO05D000036 4.8e-15 86.7 96 65.6
Thhalv10002517m.g Eutrema salsugineum HOM05D000081 ORTHO05D000036 2.4e-14 84.3 100 65.0
Sp3g23480 Schrenkiella parvula HOM05D000081 ORTHO05D000036 5.3e-14 83.2 100 63.0
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 1.2e-13 82.0 65 72.3
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.4e-11 75.1 42 78.6
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 5.7e-08 63.2 54 53.7
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.7e-07 61.6 80 47.5


User provided reference genes

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