Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G42440 Arabidopsis lyrata HOM05D007219 ORTHO05D008995 1.1e-116 423.3 215 100.0
AT2G04845 Arabidopsis thaliana HOM05D007219 ORTHO05D008995 1.7e-109 399.4 215 93.5
Carub.0003s2645 Capsella rubella HOM05D007219 ORTHO05D008995 3.5e-107 391.7 214 92.5
Sp3g23430 Schrenkiella parvula HOM05D007219 ORTHO05D008995 4.1e-103 378.3 210 90.5
Thhalv10002661m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 1.2e-102 376.7 211 88.6
CARHR102840 Cardamine hirsuta HOM05D007219 ORTHO05D008995 5.5e-100 367.9 205 89.3
BolC3t17801H Brassica oleracea HOM05D007219 ORTHO05D008995 3.1e-95 352.1 205 83.9
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 1.8e-90 336.3 198 84.8
THA.LOC104826618 Tarenaya hassleriana HOM05D007219 ORTHO05D008995 5.9e-86 321.2 214 74.8
TAR626G0546 Trochodendron aralioides HOM05D007219 ORTHO05D008995 2.7e-78 295.8 195 72.8
Prupe.3G202800 Prunus persica HOM05D007219 ORTHO05D008995 8.5e-77 290.8 192 72.4
Cpa.g.sc395.3 Carica papaya HOM05D007219 ORTHO05D008995 1.9e-76 289.7 195 71.8
GSVIVG01030037001 Vitis vinifera HOM05D007219 ORTHO05D008995 3.2e-76 288.9 194 71.1
QL08p028873 Quercus lobata HOM05D007219 ORTHO05D008995 5.5e-76 288.1 192 71.4
Thecc.01G189100 Theobroma cacao HOM05D007219 ORTHO05D008995 5.5e-76 288.1 195 70.8
Duzib138G0301 Durio zibethinus HOM05D007219 ORTHO05D008995 4.7e-75 285.0 195 69.7
Gorai.001G193200 Gossypium raimondii HOM05D007219 ORTHO05D008995 1.4e-74 283.5 194 70.6
Gohir.A07G167500 Gossypium hirsutum HOM05D007219 ORTHO05D008995 1.8e-74 283.1 194 70.6
Gohir.D07G173000 Gossypium hirsutum HOM05D007219 ORTHO05D008995 4.0e-74 282.0 194 70.1
CANSAT64G0298 Cannabis sativa HOM05D007219 ORTHO05D008995 1.2e-73 280.4 194 68.6
RcHm_v2.0_Chr2g0156861 Rosa chinensis HOM05D007219 ORTHO05D008995 1.2e-73 280.4 194 69.6
FvH4_6g41300 Fragaria vesca HOM05D007219 ORTHO05D008995 1.5e-73 280.0 193 70.5
Nn1g03266 Nelumbo nucifera HOM05D007219 ORTHO05D008995 2.6e-73 279.3 188 69.7
FAN14G1895 Fragaria x ananassa HOM05D007219 ORTHO05D008995 7.5e-73 277.7 193 69.9
Potri.014G161800 Populus trichocarpa HOM05D007219 ORTHO05D008995 7.5e-73 277.7 192 70.3
vmacro12114 Vaccinium macrocarpon HOM05D007219 ORTHO05D008995 7.5e-73 277.7 194 68.0
Atru.chr6.3346 Acer truncatum HOM05D007219 ORTHO05D008995 9.8e-73 277.3 195 70.3
Cc07_g19250 Coffea canephora HOM05D007219 ORTHO05D008995 1.7e-72 276.6 194 69.1
Peaxi162Scf00147g01822 Petunia axillaris HOM05D007219 ORTHO05D008995 1.7e-72 276.6 195 68.2
CAN.G716.12 Capsicum annuum HOM05D007219 ORTHO05D008995 3.7e-72 275.4 195 67.7
MD09G1120700 Malus domestica HOM05D007219 ORTHO05D008995 3.7e-72 275.4 193 69.9
TWI36G0002 Tripterygium wilfordii HOM05D007219 ORTHO05D008995 3.7e-72 275.4 195 68.2
CsaV3_7G002720 Cucumis sativus L. HOM05D007219 ORTHO05D008995 6.3e-72 274.6 192 68.8
Sopen05g025870 Solanum pennellii HOM05D007219 ORTHO05D008995 8.3e-72 274.2 195 67.7
CSS0025035 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 1.1e-71 273.9 194 67.5
Nitab4.5_0011106g0020 Nicotiana tabacum HOM05D007219 ORTHO05D008995 1.1e-71 273.9 195 68.7
Manes.12G083700 Manihot esculenta HOM05D007219 ORTHO05D008995 1.4e-71 273.5 199 69.3
Eucgr.K00659 Eucalyptus grandis HOM05D007219 ORTHO05D008995 4.1e-71 271.9 193 69.4
Lj6g0005071 Lotus japonicus HOM05D007219 ORTHO05D008995 4.1e-71 271.9 193 66.3
Dinv05845 Davidia involucrata HOM05D007219 ORTHO05D008995 7.0e-71 271.2 188 69.1
Hund24148 Selenicereus undatus HOM05D007219 ORTHO05D008995 9.1e-71 270.8 189 69.3
Glyma.13G025700 Glycine max HOM05D007219 ORTHO05D008995 2.7e-70 269.2 193 66.8
Hma1.2p1_0133F.1_g061230 Hydrangea macrophylla HOM05D007219 ORTHO05D008995 4.5e-70 268.5 194 65.5
Lsat_1_v5_gn_5_121560 Lactuca sativa HOM05D007219 ORTHO05D008995 1.7e-69 266.5 195 64.6
Aqoxy1G04023 Aquilegia oxysepala HOM05D007219 ORTHO05D008995 2.2e-69 266.2 194 66.0
PGR142G0267 Punica granatum HOM05D007219 ORTHO05D008995 2.2e-69 266.2 200 65.5
Sed0018447 Sechium edule HOM05D007219 ORTHO05D008995 2.9e-69 265.8 169 75.1
Psat5g102680 Pisum sativum HOM05D007219 ORTHO05D008995 3.8e-69 265.4 193 64.2
CDE10G1006 Ceratophyllum demersum HOM05D007219 ORTHO05D008995 8.5e-69 264.2 181 69.6
Lalb_Chr22g0360881 Lupinus albus HOM05D007219 ORTHO05D008995 1.1e-68 263.8 197 62.9
Medtr3g083200 Medicago truncatula HOM05D007219 ORTHO05D008995 1.1e-68 263.8 193 65.3
Migut.M00020 Erythranthe guttata HOM05D007219 ORTHO05D008995 1.5e-68 263.5 195 63.6
Phvul.006G013300 Phaseolus vulgaris HOM05D007219 ORTHO05D008995 2.5e-68 262.7 193 64.2
arahy.Tifrunner.gnm1.ann1.N6EW4G Arachis hypogaea HOM05D007219 ORTHO05D008995 3.2e-68 262.3 192 65.1
SalBow7G0564 Salvia bowleyana HOM05D007219 ORTHO05D008995 7.2e-68 261.2 194 65.5
PGSC0003DMG400020758 Solanum tuberosum HOM05D007219 ORTHO05D008995 1.2e-67 260.4 171 72.5
TPR.G19322 Trifolium pratense HOM05D007219 ORTHO05D008995 2.1e-67 259.6 193 64.8
PSO302G0207 Papaver somniferum HOM05D007219 ORTHO05D008995 3.6e-67 258.8 180 68.9
ECA234G4660 Erigeron canadensis HOM05D007219 ORTHO05D008995 6.1e-67 258.1 195 63.6
ATR0712G058 Amborella trichopoda HOM05D007219 ORTHO05D008995 8.0e-67 257.7 196 65.3
DCAR_019229 Daucus carota HOM05D007219 ORTHO05D008995 1.0e-66 257.3 185 67.6
MSTRG.14930 Avicennia marina HOM05D007219 ORTHO05D008995 2.3e-66 256.1 195 63.6
CiPaw.03G278000 Carya illinoinensis HOM05D007219 ORTHO05D008995 3.0e-66 255.8 192 65.1
Oeu029809.1 Olea europaea HOM05D007219 ORTHO05D008995 3.0e-66 255.8 195 63.1
Haze_12702 Corylus avellana HOM05D007219 ORTHO05D008995 4.0e-66 255.4 187 66.8
HanXRQChr12g0373931 Helianthus annuus HOM05D007219 ORTHO05D008995 7.5e-65 251.1 188 63.8
AUR62017530 Chenopodium quinoa HOM05D007219 ORTHO05D008995 3.7e-64 248.8 256 52.3
HPP92_020392 Vanilla planifolia HOM05D007219 ORTHO05D008995 4.9e-64 248.4 173 69.9
MELO3C024213.2 Cucumis melo HOM05D007219 ORTHO05D008995 2.4e-63 246.1 192 63.5
Actinidia07878 Actinidia chinensis HOM05D007219 ORTHO05D008995 3.1e-63 245.7 168 69.6
Duzib133G0547 Durio zibethinus HOM05D007219 ORTHO05D008995 2.0e-62 243.0 189 64.0
Ciclev10016673m.g Citrus clementina HOM05D007219 ORTHO05D008995 1.5e-60 236.9 154 72.7
COL.COLO4_04268 Corchorus olitorius HOM05D007219 ORTHO05D008995 4.3e-60 235.3 185 61.6
Os03g0194400 Oryza sativa ssp. japonica HOM05D007219 ORTHO05D008995 4.3e-60 235.3 178 66.3
Sabra14G0123400 Salix brachista HOM05D007219 ORTHO05D008995 1.6e-59 233.4 266 50.0
MBI16_g42309_MAGBIO Magnolia biondii HOM05D007219 ORTHO05D008995 1.8e-58 229.9 170 68.2
FAN05G4854 Fragaria x ananassa HOM05D007219 ORTHO05D008995 6.8e-58 228.0 199 60.3
Dinv07849 Davidia involucrata HOM05D007219 ORTHO05D008995 3.7e-56 222.2 143 72.0
EL10Ac9g22747 Beta vulgaris HOM05D007219 ORTHO05D008995 1.6e-54 216.9 195 57.4
QL08p028923 Quercus lobata HOM05D007219 ORTHO05D008995 1.6e-54 216.9 342 39.2
arahy.Tifrunner.gnm1.ann1.E78GDQ Arachis hypogaea HOM05D007219 ORTHO05D008995 7.8e-54 214.5 318 39.9
arahy.Tifrunner.gnm1.ann1.XZ9N91 Arachis hypogaea HOM05D007219 ORTHO05D008995 7.8e-54 214.5 318 39.9
Zm00001eb401150 Zea mays HOM05D007219 ORTHO05D008995 2.3e-53 213.0 150 67.3
SGA_v2.0_scaffold73G24522 Striga asiatica HOM05D007219 ORTHO05D008995 4.7e-51 205.3 154 62.3
Mapoly0089s0028 Marchantia polymorpha HOM05D007219 ORTHO05D008995 1.5e-49 200.3 172 56.4
SMO115G0308 Selaginella moellendorffii HOM05D007219 ORTHO05D008995 3.4e-49 199.1 170 58.8
Ah.14g082820 Amaranthus hybridus HOM05D007219 ORTHO05D008995 6.6e-45 184.9 135 66.7
AUR62015074 Chenopodium quinoa HOM05D007219 ORTHO05D008995 1.5e-44 183.7 136 66.2
ClCG02G002620 Citrullus lanatus HOM05D007219 ORTHO05D008995 1.9e-44 183.3 139 63.3
FAN02G0754 Fragaria x ananassa HOM05D007219 ORTHO05D008995 1.9e-44 183.3 193 51.8
Sc21g0000880 Simmondsia chinensis HOM05D007219 ORTHO05D008995 5.2e-42 175.3 110 69.1
Cfa014252 Carpinus fangiana HOM05D007219 ORTHO05D008995 1.7e-40 170.2 133 60.9
VMungo0540G0477 Vigna mungo HOM05D007219 ORTHO05D008995 4.9e-40 168.7 191 47.1
Ca_16365_v3 Cicer arietinum L. HOM05D007219 ORTHO05D008995 1.1e-39 167.5 121 66.9
MCO15G116 Micromonas commoda HOM05D007219 ORTHO05D008995 1.7e-37 160.2 177 49.7
Rhsim06G0172900 Rhododendron simsii HOM05D007219 ORTHO05D008995 8.9e-34 147.9 253 39.9
CBR_g31837 Chara braunii HOM05D007219 ORTHO05D008995 2.9e-32 142.9 269 33.1
Thhalv10003074m.g Eutrema salsugineum HOM05D007219 ORTHO05D008995 1.9e-31 140.2 123 63.4
Nitab4.5_0002877g0050 Nicotiana tabacum HOM05D007219 ORTHO05D008995 5.1e-29 132.1 91 71.4
MD17G1111700 Malus domestica HOM05D007219 ORTHO05D008995 4.7e-27 125.6 109 56.9
SEGI_01956 Sequoiadendron giganteum HOM05D007219 ORTHO05D008995 8.1e-27 124.8 83 67.5
AagrBONN_evm.TU.Sc2ySwM_362.1409 Anthoceros agrestis HOM05D007219 ORTHO05D008995 9.6e-20 101.3 128 45.3
CSS0035148 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 6.2e-19 98.6 83 62.7
PRCOL_00004041 Prasinoderma coloniale HOM05D007219 ORTHO05D008995 1.5e-17 94.0 164 37.2
MD17G1111600 Malus domestica HOM05D007219 ORTHO05D008995 4.6e-14 82.4 75 57.3
Actinidia09773 Actinidia chinensis HOM05D007219 ORTHO05D008995 1.1e-12 77.8 55 61.8
Cre03.g184151 Chlamydomonas reinhardtii HOM05D007219 ORTHO05D008995 2.1e-11 73.6 110 39.1
Oeu027288.1 Olea europaea HOM05D007219 ORTHO05D008995 1.5e-09 67.4 52 65.4
CSS0021882 Camellia sinensis var. sinensis HOM05D005012 ORTHO05D005886 4.2e-07 59.3 34 70.6
CSS0030489 Camellia sinensis var. sinensis HOM05D007219 ORTHO05D008995 5.5e-07 58.9 37 62.2


User provided reference genes

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