Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 3.7e-48 194.5 96 100.0
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.7e-45 185.7 96 94.8
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.1e-39 166.4 96 89.6
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 1.2e-38 162.9 96 86.5
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.6e-38 162.5 96 86.5
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.6e-38 162.5 96 86.5
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.7e-38 161.8 96 85.4
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.7e-38 161.8 96 85.4
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.9e-36 155.6 96 83.3
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 2.5e-36 155.2 96 83.3
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.3e-29 132.1 108 64.8
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 3.9e-29 131.3 100 68.0
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 3.9e-29 131.3 100 68.0
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 6.6e-29 130.6 101 64.4
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.1e-28 129.8 100 67.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.1e-28 129.8 100 67.0
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.5e-28 128.6 97 70.1
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.3e-28 127.9 99 69.7
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 9.5e-28 126.7 100 66.0
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.2e-27 126.3 103 65.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.8e-27 125.2 100 65.0
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 1.8e-26 122.5 99 71.7
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 2.3e-26 122.1 109 59.6
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 5.2e-26 120.9 96 65.6
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 2.6e-25 118.6 93 63.4
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.3e-21 106.3 88 63.6
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 3.9e-21 104.8 109 52.3
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.5e-20 102.1 111 47.7
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.2e-19 99.8 110 47.3
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.6e-19 99.4 109 51.4
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 2.8e-19 98.6 106 50.0
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.8e-19 98.6 109 47.7
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 2.8e-19 98.6 110 46.4
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.6e-19 98.2 104 50.0
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 4.7e-19 97.8 102 50.0
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 8.1e-19 97.1 104 49.0
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.1e-18 96.7 102 49.0
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.4e-18 96.3 112 47.3
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.4e-18 96.3 112 47.3
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-18 96.3 104 49.0
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.4e-18 96.3 106 47.2
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 1.8e-18 95.9 122 44.3
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 2.3e-18 95.5 98 46.9
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 3.1e-18 95.1 114 47.4
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 4.0e-18 94.7 113 46.9
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 5.2e-18 94.4 113 46.9
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.5e-17 92.8 111 45.9
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.5e-17 92.8 108 46.3
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 2.0e-17 92.4 110 43.6
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 4.4e-17 91.3 109 46.8
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 5.8e-17 90.9 108 45.4
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 5.8e-17 90.9 95 51.6
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 7.6e-17 90.5 100 44.0
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 7.6e-17 90.5 103 46.6
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 9.9e-17 90.1 103 46.6
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.7e-16 89.4 104 44.2
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.7e-16 89.4 108 44.4
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 2.9e-16 88.6 105 44.8
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.9e-16 87.8 109 44.0
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.9e-16 87.8 109 44.0
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.9e-16 87.8 109 44.0
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 8.3e-16 87.0 109 44.0
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.4e-15 86.3 108 43.5
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.4e-15 86.3 111 45.9
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.9e-15 85.9 109 46.8
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 4.1e-15 84.7 104 44.2
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 7.1e-15 84.0 94 45.7
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 7.1e-15 84.0 108 41.7
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 9.2e-15 83.6 101 41.6
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 1.2e-14 83.2 103 45.6
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 1.6e-14 82.8 110 45.5
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.7e-14 82.0 107 42.1
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.7e-14 82.0 107 42.1
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 2.7e-14 82.0 108 45.4
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 2.7e-14 82.0 108 45.4
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 3.5e-14 81.6 108 41.7
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 3.5e-14 81.6 107 45.8
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 3.5e-14 81.6 107 44.9
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 6.0e-14 80.9 111 45.9
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 6.0e-14 80.9 106 38.7
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 6.0e-14 80.9 108 40.7
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 6.0e-14 80.9 119 40.3
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 7.8e-14 80.5 103 45.6
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 7.8e-14 80.5 103 45.6
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 7.8e-14 80.5 114 43.9
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.0e-13 80.1 107 40.2
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.0e-13 80.1 110 45.5
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.0e-13 80.1 88 44.3
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.3e-13 79.7 110 43.6
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.3e-13 79.7 96 42.7
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.7e-13 79.3 111 44.1
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 3.9e-13 78.2 104 40.4
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 5.1e-13 77.8 108 40.7
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 5.1e-13 77.8 110 40.0
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 6.6e-13 77.4 105 43.8
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 6.6e-13 77.4 87 46.0
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 8.6e-13 77.0 104 39.4
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 8.6e-13 77.0 86 45.3
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 3.3e-12 75.1 104 40.4
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 3.3e-12 75.1 123 39.0
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 4.3e-12 74.7 116 37.1
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 4.3e-12 74.7 130 36.2
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 7.3e-12 73.9 106 40.6
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.6e-11 72.8 90 45.6
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.6e-11 72.8 92 42.4
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.6e-11 72.8 108 41.7
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 2.1e-11 72.4 51 54.9
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.1e-11 72.4 97 39.2
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 2.8e-11 72.0 70 48.6
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.8e-11 72.0 88 42.0
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 2.8e-11 72.0 104 40.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 3.6e-11 71.6 105 41.9
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 6.2e-11 70.9 93 44.1
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 6.2e-11 70.9 99 38.4
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.1e-11 70.5 105 39.0
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.1e-10 70.1 107 37.4
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.4e-10 68.9 112 33.9
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.4e-10 68.9 116 35.3
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.1e-10 68.6 116 35.3
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 3.1e-10 68.6 97 42.3
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.0e-10 68.2 108 40.7
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 4.0e-10 68.2 95 41.1
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 5.2e-10 67.8 98 41.8
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.5e-09 66.2 108 38.0
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.6e-09 65.5 108 37.0
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.6e-09 65.5 110 38.2
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 3.4e-09 65.1 112 39.3
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.4e-09 65.1 107 38.3
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 4.4e-09 64.7 114 36.0
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 4.4e-09 64.7 104 40.4
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.3e-08 63.2 98 42.9
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 2.2e-08 62.4 114 35.1
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.8e-08 61.6 101 34.7
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 6.4e-08 60.8 77 40.3
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 6.4e-08 60.8 97 35.1
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 9.3e-07 57.0 101 37.6
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 2.7e-06 55.5 111 33.3
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 2.7e-06 55.5 35 54.3
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 4.6e-06 54.7 98 33.7
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 6.0e-06 54.3 86 38.4


User provided reference genes

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