Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G42130 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 4.1e-96 354.8 183 100.0
AT2G04480 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 5.0e-78 294.7 183 84.7
Sp3g23270 Schrenkiella parvula HOM05D009495 ORTHO05D004704 6.4e-73 277.7 183 82.5
CARHR102390 Cardamine hirsuta HOM05D009495 ORTHO05D004704 1.5e-69 266.5 184 78.8
Thhalv10002998m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 2.0e-66 256.1 184 74.5
Carub.0003s2613 Capsella rubella HOM05D009495 ORTHO05D004704 1.1e-61 240.4 210 68.1
BcaB06g26787 Brassica carinata HOM05D009495 ORTHO05D004704 1.2e-60 236.9 181 71.8
C07p10220 Brassica napus HOM05D009495 ORTHO05D004704 1.2e-60 236.9 184 72.8
BraA07t28463Z Brassica rapa HOM05D009495 ORTHO05D004704 3.4e-58 228.8 184 70.7
A07p06700 Brassica napus HOM05D009495 ORTHO05D004704 5.8e-58 228.0 184 70.7
BcaC06g35871 Brassica carinata HOM05D009495 ORTHO05D004704 1.5e-53 213.4 184 67.4
BolC7t41473H Brassica oleracea HOM05D009495 ORTHO05D004704 1.5e-53 213.4 184 67.4
AT5G35870 Arabidopsis thaliana HOM05D009495 ORTHO05D004704 1.4e-35 153.7 187 50.8
AL7G44750 Arabidopsis lyrata HOM05D009495 ORTHO05D004704 7.6e-34 147.9 174 51.1
Carub.0007s3167 Capsella rubella HOM05D009495 ORTHO05D004704 2.4e-32 142.9 190 50.0
Thhalv10005712m.g Eutrema salsugineum HOM05D009495 ORTHO05D004704 7.9e-31 137.9 186 48.9
Sp7g06260 Schrenkiella parvula HOM05D009495 ORTHO05D004704 7.9e-31 137.9 183 50.8
CARHR216740 Cardamine hirsuta HOM05D009495 ORTHO05D004704 3.0e-30 136.0 184 51.6
C09p26070 Brassica napus HOM05D009495 ORTHO05D004704 7.4e-29 131.3 184 46.2
BolC9t55510H Brassica oleracea HOM05D009495 ORTHO05D004704 7.4e-29 131.3 184 46.2
BcaB02g08048 Brassica carinata HOM05D009495 ORTHO05D004704 1.6e-28 130.2 183 48.1
C04p43510 Brassica napus HOM05D009495 ORTHO05D004704 3.4e-26 122.5 189 43.9
A04p10030 Brassica napus HOM05D009495 ORTHO05D004704 4.5e-26 122.1 177 47.5
BraA04t16665Z Brassica rapa HOM05D009495 ORTHO05D004704 4.5e-26 122.1 177 47.5
BcaC02g09504 Brassica carinata HOM05D009495 ORTHO05D004704 5.8e-26 121.7 191 44.0
Aa31sc203G20 Aethionema arabicum HOM05D009495 ORTHO05D004704 1.2e-23 114.0 189 44.4
BcaC04g21895 Brassica carinata HOM05D009495 ORTHO05D004704 2.1e-20 103.2 188 40.4
Sed0027972 Sechium edule HOM05D005849 ORTHO05D004704 4.8e-20 102.1 210 40.0
THA.LOC104808845 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 4.8e-20 102.1 217 41.5
Sed0012118 Sechium edule HOM05D005849 ORTHO05D004704 2.2e-17 93.2 227 37.4
Cfa014225 Carpinus fangiana HOM05D005849 ORTHO05D004704 1.1e-16 90.9 212 35.8
Duzib138G1177 Durio zibethinus HOM05D005849 ORTHO05D004704 1.1e-16 90.9 99 52.5
Haze_12628 Corylus avellana HOM05D005849 ORTHO05D004704 2.5e-16 89.7 191 38.2
A09p20650 Brassica napus HOM05D009495 ORTHO05D004704 5.5e-16 88.6 184 37.5
BraA09t37669Z Brassica rapa HOM05D009495 ORTHO05D004704 5.5e-16 88.6 184 37.5
THA.LOC104815364 Tarenaya hassleriana HOM05D005849 ORTHO05D004704 6.0e-15 85.1 86 59.3
COL.COLO4_19617 Corchorus olitorius HOM05D005849 ORTHO05D004704 1.3e-14 84.0 106 49.1
QL04p068477 Quercus lobata HOM05D005849 ORTHO05D004704 3.9e-14 82.4 223 34.1
Thecc.01G196200 Theobroma cacao HOM05D005849 ORTHO05D004704 5.1e-14 82.0 133 42.9
LjContig00081g0015024 Lotus japonicus HOM05D005849 ORTHO05D004704 6.7e-14 81.6 92 51.1
Psat2g002880 Pisum sativum HOM05D005849 ORTHO05D004704 1.1e-13 80.9 99 53.5
CiPaw.03G281900 Carya illinoinensis HOM05D005849 ORTHO05D004704 1.5e-13 80.5 101 46.5
MELO3C025957.2 Cucumis melo HOM05D005849 ORTHO05D004704 1.5e-13 80.5 130 42.3
CsaV3_6G009640 Cucumis sativus L. HOM05D005849 ORTHO05D004704 2.5e-13 79.7 238 34.9
TWI36G1699 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 2.5e-13 79.7 117 46.2
Manes.12G064702 Manihot esculenta HOM05D005849 ORTHO05D004704 3.3e-13 79.3 122 43.4
Glyma.13G006500 Glycine max HOM05D005849 ORTHO05D004704 7.4e-13 78.2 130 41.5
TWI18G0644 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 7.4e-13 78.2 91 51.6
Gorai.001G191400 Gossypium raimondii HOM05D005849 ORTHO05D004704 9.7e-13 77.8 99 47.5
Nn1g03187 Nelumbo nucifera HOM05D005849 ORTHO05D004704 9.7e-13 77.8 85 51.8
Potri.014G167700 Populus trichocarpa HOM05D005849 ORTHO05D004704 9.7e-13 77.8 93 50.5
Gohir.D07G171100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.3e-12 77.4 100 48.0
Sabra14G0127500 Salix brachista HOM05D005849 ORTHO05D004704 1.3e-12 77.4 142 38.0
Duzib133G0645 Durio zibethinus HOM05D005849 ORTHO05D004704 1.6e-12 77.0 256 32.8
MD09G1126800 Malus domestica HOM05D005849 ORTHO05D004704 2.8e-12 76.3 211 31.8
Lj8P136T22 Lonicera japonica HOM05D005849 ORTHO05D004704 3.7e-12 75.9 224 32.1
TPR.G35904 Trifolium pratense HOM05D005849 ORTHO05D004704 3.7e-12 75.9 218 32.6
CiPaw.04G197000 Carya illinoinensis HOM05D005849 ORTHO05D004704 6.3e-12 75.1 154 38.3
Cc03_g07410 Coffea canephora HOM05D005849 ORTHO05D004704 6.3e-12 75.1 107 46.7
Manes.13G061900 Manihot esculenta HOM05D005849 ORTHO05D004704 6.3e-12 75.1 122 45.1
Medtr3g082780 Medicago truncatula HOM05D005849 ORTHO05D004704 6.3e-12 75.1 75 53.3
TAR629G2787 Trochodendron aralioides HOM05D005849 ORTHO05D004704 6.3e-12 75.1 89 49.4
VMungo0540G2501 Vigna mungo HOM05D005849 ORTHO05D004704 6.3e-12 75.1 85 54.1
MD17G1117100 Malus domestica HOM05D005849 ORTHO05D004704 8.2e-12 74.7 168 33.9
Ca_06483_v3 Cicer arietinum L. HOM05D005849 ORTHO05D004704 1.4e-11 73.9 81 54.3
Gohir.A07G169800 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.1e-11 72.8 223 31.8
TPR.G11064 Trifolium pratense HOM05D005849 ORTHO05D004704 3.1e-11 72.8 184 33.7
Psat5g104280 Pisum sativum HOM05D005849 ORTHO05D004704 5.3e-11 72.0 204 33.3
Prupe.3G197400 Prunus persica HOM05D005849 ORTHO05D004704 5.3e-11 72.0 253 30.0
PGR083G2364 Punica granatum HOM05D005849 ORTHO05D004704 5.3e-11 72.0 186 35.5
RcHm_v2.0_Chr2g0155981 Rosa chinensis HOM05D005849 ORTHO05D004704 5.3e-11 72.0 224 33.0
Actinidia07866 Actinidia chinensis HOM05D005849 ORTHO05D004704 9.0e-11 71.2 107 45.8
Nn1g07503 Nelumbo nucifera HOM05D005849 ORTHO05D004704 1.2e-10 70.9 87 50.6
Gohir.D07G198400 Gossypium hirsutum HOM05D005849 ORTHO05D004704 3.4e-10 69.3 227 34.4
Medtr5g098480 Medicago truncatula HOM05D005849 ORTHO05D004704 3.4e-10 69.3 177 34.5
Rhsim06G0176600 Rhododendron simsii HOM05D005849 ORTHO05D004704 3.4e-10 69.3 124 41.9
Gorai.001G222200 Gossypium raimondii HOM05D005849 ORTHO05D004704 4.5e-10 68.9 227 34.8
Solyc07g045450.1 Solanum lycopersicum HOM05D005849 ORTHO05D004704 4.5e-10 68.9 89 47.2
Sopen07g023990 Solanum pennellii HOM05D005849 ORTHO05D004704 4.5e-10 68.9 89 47.2
Gohir.A07G192100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 7.7e-10 68.2 142 39.4
Phvul.007G121090 Phaseolus vulgaris HOM05D005849 ORTHO05D004704 7.7e-10 68.2 107 45.8
MBI19_g14891_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 1.0e-09 67.8 129 40.3
ClCG02G009210 Citrullus lanatus HOM05D005849 ORTHO05D004704 1.7e-09 67.0 114 37.7
Actinidia18832 Actinidia chinensis HOM05D005849 ORTHO05D004704 2.2e-09 66.6 116 41.4
ECA240G3450 Erigeron canadensis HOM05D005849 ORTHO05D004704 3.8e-09 65.9 111 40.5
Lsat_1_v5_gn_9_103781 Lactuca sativa HOM05D005849 ORTHO05D004704 3.8e-09 65.9 175 32.6
Cpa.g.sc136.30 Carica papaya HOM05D005849 ORTHO05D004704 5.0e-09 65.5 135 35.6
Ciclev10018021m.g Citrus clementina HOM05D005849 ORTHO05D004704 5.0e-09 65.5 135 40.7
Glyma.20G062100 Glycine max HOM05D005849 ORTHO05D004704 5.0e-09 65.5 149 31.5
MBI16_g22138_MAGBIO Magnolia biondii HOM05D005849 ORTHO05D004704 8.5e-09 64.7 84 47.6
Aqoxy4G02338 Aquilegia oxysepala HOM05D005849 ORTHO05D004704 1.1e-08 64.3 128 35.9
Lalb_Chr10g0107651 Lupinus albus HOM05D005849 ORTHO05D004704 1.4e-08 63.9 130 36.9
FAN09G2506 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.9e-08 63.5 99 45.5
Oeu064351.1 Olea europaea HOM05D005849 ORTHO05D004704 1.9e-08 63.5 117 39.3
EL10Ac9g22679 Beta vulgaris HOM05D005849 ORTHO05D004704 2.5e-08 63.2 134 35.1
DCAR_019680 Daucus carota HOM05D005849 ORTHO05D004704 3.2e-08 62.8 117 40.2
Dinv26604 Davidia involucrata HOM05D005849 ORTHO05D004704 3.2e-08 62.8 237 27.4
TAR629G2911 Trochodendron aralioides HOM05D005849 ORTHO05D004704 3.2e-08 62.8 156 36.5
FAN02G2959 Fragaria x ananassa HOM05D005849 ORTHO05D004704 4.2e-08 62.4 244 31.1
Peaxi162Scf00802g00130 Petunia axillaris HOM05D005849 ORTHO05D004704 4.2e-08 62.4 182 33.0
PSO541G2883 Papaver somniferum HOM05D005849 ORTHO05D004704 5.5e-08 62.0 112 37.5
Sc20g0004000 Simmondsia chinensis HOM05D005849 ORTHO05D004704 5.5e-08 62.0 105 41.0
PSO675G3647 Papaver somniferum HOM05D005849 ORTHO05D004704 7.2e-08 61.6 111 36.9
AUR62029117 Chenopodium quinoa HOM05D005849 ORTHO05D004704 9.4e-08 61.2 142 35.2
FvH4_6g40610 Fragaria vesca HOM05D005849 ORTHO05D004704 1.2e-07 60.8 225 31.1
FAN05G2424 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.2e-07 60.8 225 31.1
FAN14G3262 Fragaria x ananassa HOM05D005849 ORTHO05D004704 1.2e-07 60.8 225 31.1
ATR0827G126 Amborella trichopoda HOM05D005849 ORTHO05D004704 1.6e-07 60.5 109 40.4
Nn1g04368 Nelumbo nucifera HOM05D005849 ORTHO05D004704 2.1e-07 60.1 70 47.1
arahy.Tifrunner.gnm1.ann1.8Y07GA Arachis hypogaea HOM05D005849 ORTHO05D004704 3.6e-07 59.3 185 35.7
AUR62015005 Chenopodium quinoa HOM05D005849 ORTHO05D004704 7.9e-07 58.2 139 35.3
Os12g0498900 Oryza sativa ssp. japonica HOM05D005849 ORTHO05D004704 7.9e-07 58.2 143 36.4
CANSAT11G2057 Cannabis sativa HOM05D005849 ORTHO05D004704 1.0e-06 57.8 117 38.5
Gohir.A01G091100 Gossypium hirsutum HOM05D005849 ORTHO05D004704 1.4e-06 57.4 107 40.2
Lj1P796T11 Lonicera japonica HOM05D005849 ORTHO05D004704 1.4e-06 57.4 74 48.6
TWI38G0138 Tripterygium wilfordii HOM05D005849 ORTHO05D004704 1.8e-06 57.0 84 44.0
DCAR_012893 Daucus carota HOM05D005849 ORTHO05D004704 5.1e-06 55.5 135 34.8


User provided reference genes

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