Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 7.1e-90 334.0 174 100.0
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.3e-86 323.2 174 96.6
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 4.8e-86 321.2 174 96.0
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 1.5e-84 316.2 173 94.8
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 1.7e-83 312.8 173 93.6
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 6.4e-83 310.8 173 94.2
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.9e-82 309.3 174 94.3
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 3.2e-82 308.5 173 93.6
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 4.2e-82 308.1 174 90.8
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 5.5e-82 307.8 173 93.6
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 5.5e-82 307.8 173 93.6
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 7.1e-82 307.4 173 93.1
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 3.5e-73 278.5 164 86.6
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.2e-59 232.6 170 67.6
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.5e-58 229.2 171 66.7
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 2.5e-58 229.2 171 66.7
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 4.2e-58 228.4 170 67.1
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 7.2e-58 227.6 170 67.6
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 1.2e-57 226.9 168 67.3
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.6e-57 226.5 171 66.1
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 2.7e-57 225.7 163 68.7
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 4.7e-57 224.9 170 66.5
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 6.1e-57 224.6 166 66.3
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 7.9e-57 224.2 161 68.3
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 1.4e-56 223.4 164 68.3
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 3.0e-56 222.2 175 66.3
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 3.9e-56 221.9 170 64.1
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 8.8e-56 220.7 162 67.9
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 8.8e-56 220.7 164 67.7
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 8.8e-56 220.7 173 62.4
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 1.1e-55 220.3 167 62.9
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 1.5e-55 219.9 173 67.1
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 2.0e-55 219.5 173 64.7
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 2.6e-55 219.2 161 68.3
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.3e-55 218.8 160 66.9
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 3.3e-55 218.8 164 67.7
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 2.2e-54 216.1 161 65.2
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 3.7e-54 215.3 163 65.0
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.4e-53 212.6 170 63.5
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 2.4e-53 212.6 163 63.8
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 3.1e-53 212.2 166 65.1
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 3.1e-53 212.2 162 64.8
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 3.1e-53 212.2 162 64.8
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 4.1e-53 211.8 165 64.2
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 9.1e-53 210.7 161 62.7
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 1.2e-52 210.3 165 64.8
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.5e-52 209.9 162 67.9
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 2.0e-52 209.5 173 60.1
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 4.5e-52 208.4 161 64.0
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 5.9e-52 208.0 156 65.4
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 1.0e-51 207.2 174 62.1
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 1.3e-51 206.8 161 61.5
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.3e-51 206.8 161 63.4
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 1.7e-51 206.5 153 66.7
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 1.7e-51 206.5 175 63.4
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 3.8e-51 205.3 160 63.8
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 5.0e-51 204.9 163 65.6
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 5.0e-51 204.9 163 65.6
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 6.5e-51 204.5 173 60.7
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 8.5e-51 204.1 165 61.2
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 8.5e-51 204.1 155 67.7
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 1.9e-50 203.0 161 67.1
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.5e-50 202.6 163 65.0
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 2.5e-50 202.6 155 68.4
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 7.2e-50 201.1 163 63.8
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.6e-49 199.9 135 75.6
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 2.1e-49 199.5 163 63.8
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 2.7e-49 199.1 155 63.2
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 3.6e-49 198.7 149 65.8
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 6.1e-49 198.0 176 60.2
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 6.1e-49 198.0 180 58.3
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 1.0e-48 197.2 154 62.3
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.4e-48 196.8 154 63.0
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.8e-48 196.4 174 60.3
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.8e-48 196.4 161 60.2
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 1.8e-48 196.4 161 60.2
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 2.3e-48 196.1 156 60.3
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 3.0e-48 195.7 154 61.7
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 5.2e-48 194.9 137 67.2
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 1.1e-47 193.7 155 60.0
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 2.0e-47 193.0 170 60.6
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 3.3e-47 192.2 152 63.2
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 5.7e-47 191.4 154 63.0
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 5.7e-47 191.4 172 57.0
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 2.2e-46 189.5 211 49.3
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 2.8e-46 189.1 137 68.6
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 2.8e-46 189.1 162 56.2
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 3.7e-46 188.7 172 57.6
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 6.3e-46 188.0 172 57.6
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 8.2e-46 187.6 154 59.1
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 3.1e-45 185.7 131 69.5
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 3.1e-45 185.7 163 60.7
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 1.6e-44 183.3 165 55.8
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.0e-44 183.0 170 57.1
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 2.0e-44 183.0 217 47.9
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 2.6e-44 182.6 163 56.4
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 5.9e-44 181.4 147 62.6
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 7.7e-44 181.0 145 62.1
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 6.5e-43 177.9 146 58.9
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 5.5e-42 174.9 133 66.2
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 3.6e-41 172.2 175 55.4
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 2.3e-40 169.5 135 61.5
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 1.2e-39 167.2 173 52.6
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 2.2e-38 162.9 145 60.0
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 3.7e-38 162.2 150 52.7
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 1.1e-37 160.6 132 61.4
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 2.4e-37 159.5 134 61.9
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 9.1e-37 157.5 150 49.3
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 1.1e-34 150.6 128 60.2
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 4.2e-34 148.7 106 67.9
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 1.2e-31 140.6 111 64.0
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 4.8e-30 135.2 88 72.7
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 4.8e-30 135.2 88 70.5
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 2.0e-28 129.8 104 61.5
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 3.5e-28 129.0 127 56.7
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 1.7e-27 126.7 122 57.4
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 3.8e-27 125.6 80 73.8
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.2e-25 120.6 85 68.2
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 3.0e-24 115.9 135 40.7
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 5.4e-21 105.1 66 72.7
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 1.2e-20 104.0 88 58.0
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 2.9e-19 99.4 120 40.0
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 3.3e-18 95.9 53 83.0
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.3e-18 95.9 54 85.2
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 8.0e-17 91.3 52 78.8
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 9.8e-15 84.3 84 56.0
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 9.8e-15 84.3 70 60.0
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 9.8e-15 84.3 70 60.0
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 2.2e-14 83.2 60 65.0
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.7e-12 76.3 52 71.2
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 2.5e-10 69.7 82 40.2


User provided reference genes

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