Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 5.7e-264 913.7 455 100.0
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 5.7e-256 887.1 453 97.4
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 2.9e-252 874.8 455 95.4
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 7.7e-245 850.1 455 94.1
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 2.2e-244 848.6 456 94.1
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 1.9e-243 845.5 455 94.3
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 8.0e-242 840.1 454 93.4
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 1.8e-241 839.0 454 94.1
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 4.0e-241 837.8 454 93.8
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 6.8e-241 837.0 454 93.8
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.2e-240 836.3 454 93.6
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.2e-240 836.3 454 93.6
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 3.8e-236 821.2 455 91.4
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 2.5e-235 818.5 456 89.7
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 9.8e-232 806.6 457 89.1
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 5.8e-208 727.6 452 80.5
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 8.3e-207 723.8 447 80.8
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 8.3e-207 723.8 451 79.6
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 9.2e-206 720.3 454 78.9
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 1.6e-205 719.5 455 79.3
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 2.1e-205 719.2 454 78.4
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.1e-205 719.2 454 78.9
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 2.7e-205 718.8 443 81.9
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 2.7e-205 718.8 447 81.0
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 3.5e-205 718.4 455 78.9
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.5e-205 718.4 454 78.9
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 4.6e-205 718.0 455 78.7
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 3.0e-204 715.3 454 78.6
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 3.9e-204 714.9 449 80.0
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 5.1e-204 714.5 448 79.7
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 8.6e-204 713.8 449 80.0
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 8.6e-204 713.8 456 78.9
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 2.5e-203 712.2 425 82.6
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 5.6e-203 711.1 448 79.2
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 3.6e-202 708.4 449 79.3
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 4.7e-202 708.0 447 78.5
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 4.7e-202 708.0 427 81.3
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 2.0e-200 702.6 426 81.0
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 4.4e-200 701.4 425 80.2
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 5.8e-200 701.0 457 77.2
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 3.8e-199 698.4 448 77.9
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.9e-199 698.0 450 77.1
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 1.4e-198 696.4 445 77.3
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.9e-198 696.0 442 78.3
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 3.2e-198 695.3 457 75.7
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.1e-198 694.1 447 77.6
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 7.1e-198 694.1 455 76.9
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.1e-197 692.6 447 77.4
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 3.5e-197 691.8 447 76.7
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 4.6e-197 691.4 419 80.9
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 6.0e-197 691.0 428 78.7
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 7.8e-197 690.6 436 77.8
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.0e-196 690.3 459 76.0
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.3e-196 689.9 448 78.1
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.7e-196 689.5 447 77.4
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.7e-196 689.5 445 76.4
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 2.3e-196 689.1 446 79.1
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.5e-195 685.6 418 80.6
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 4.3e-195 684.9 448 76.3
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 7.3e-195 684.1 417 80.8
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 2.1e-194 682.6 456 73.7
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 6.2e-194 681.0 448 77.2
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.8e-193 679.5 451 74.9
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 6.9e-193 677.6 455 75.6
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 6.9e-193 677.6 448 76.1
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 2.6e-192 675.6 450 76.9
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 4.4e-192 674.9 457 75.5
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 4.4e-192 674.9 426 78.9
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 7.6e-192 674.1 425 78.6
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 2.2e-191 672.5 456 73.5
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 2.2e-191 672.5 451 75.4
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.2e-191 672.5 457 74.4
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.9e-191 671.4 443 75.4
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 4.9e-191 671.4 443 75.4
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 8.4e-191 670.6 431 76.6
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 8.4e-191 670.6 431 76.6
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 7.1e-190 667.5 456 73.7
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.2e-189 666.8 456 73.2
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.2e-189 666.8 419 79.0
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 2.1e-189 666.0 448 75.0
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.7e-189 665.6 449 74.4
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.7e-189 665.6 463 74.5
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.0e-188 663.7 441 75.7
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.3e-188 662.5 467 72.6
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 3.0e-188 662.1 447 72.9
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 8.7e-188 660.6 427 76.3
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 5.6e-187 657.9 441 75.1
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.6e-186 656.4 461 72.7
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 3.6e-186 655.2 429 76.5
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 4.8e-186 654.8 443 74.7
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 4.0e-185 651.7 467 72.6
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 5.3e-185 651.4 441 75.1
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 9.0e-185 650.6 460 71.3
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.2e-184 650.2 457 74.0
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 7.6e-184 647.5 454 71.8
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.3e-183 646.7 433 74.4
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 8.4e-183 644.0 455 72.5
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 3.2e-182 642.1 446 72.0
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 4.2e-182 641.7 419 75.4
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 9.3e-182 640.6 572 61.9
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 2.7e-181 639.0 419 73.5
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 3.5e-181 638.6 454 70.7
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.3e-180 636.0 458 72.9
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 9.6e-179 630.6 411 73.5
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.7e-175 619.8 447 71.6
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 6.4e-175 617.8 422 70.4
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.4e-174 615.9 448 69.9
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 3.2e-174 615.5 445 68.8
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 3.2e-174 615.5 475 66.9
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 4.2e-174 615.1 422 70.4
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.9e-171 606.3 363 80.4
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 3.1e-169 599.0 469 65.9
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 3.1e-169 599.0 445 68.5
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 9.0e-169 597.4 451 66.3
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.2e-168 597.0 431 70.3
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 1.3e-167 593.6 425 70.8
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 6.7e-164 581.3 421 69.6
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 8.2e-162 574.3 414 67.4
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.2e-160 570.5 449 65.0
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 3.6e-157 558.9 366 76.8
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 5.3e-153 545.0 457 64.3
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 1.4e-150 537.0 363 72.7
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.5e-150 536.2 395 69.9
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 7.4e-147 524.6 434 61.5
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 4.7e-141 505.4 332 73.5
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.8e-140 503.4 419 61.3
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.4e-137 493.8 428 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 9.1e-137 491.1 463 55.7
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 3.5e-136 489.2 438 60.3
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.8e-135 485.7 335 70.7
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 6.1e-133 478.4 438 56.2
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 2.4e-129 466.5 324 72.5
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 2.2e-122 443.4 394 60.2
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.4e-105 387.5 336 60.7
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 8.0e-101 371.7 294 63.9
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.4e-89 334.3 263 65.0
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.6e-88 330.9 209 78.0
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 2.7e-88 330.1 255 64.3
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 6.6e-87 325.5 208 79.3
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 2.4e-81 307.0 428 43.9
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 3.4e-75 286.6 197 72.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 9.9e-67 258.5 178 74.2
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 3.1e-52 210.3 160 70.0
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 1.0e-47 195.3 136 74.3
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 4.5e-43 179.9 150 61.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 7.2e-41 172.6 149 62.4
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 6.1e-40 169.5 233 46.8
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 3.9e-23 113.6 61 93.4
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 7.0e-12 76.3 56 64.3
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 7.5e-06 56.2 88 38.6


User provided reference genes

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