Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 0.0e+00 2162.1 1222 100.0
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 0.0e+00 1828.5 1242 86.6
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 0.0e+00 1608.6 1374 72.5
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 0.0e+00 1513.0 1240 67.7
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 0.0e+00 1453.0 1231 66.5
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 0.0e+00 1391.3 1242 63.3
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 0.0e+00 1391.3 1242 63.3
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 0.0e+00 1378.2 1240 62.7
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 0.0e+00 1375.1 1243 63.1
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 0.0e+00 1361.7 1237 62.5
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 0.0e+00 1321.2 1227 61.9
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 0.0e+00 1231.1 1260 58.2
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 9.2e-269 931.0 1361 46.7
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 4.5e-138 496.9 1404 32.4
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 8.1e-132 476.1 1427 31.0
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 7.4e-125 453.0 1299 31.1
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 1.3e-124 452.2 1428 30.2
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 1.0e-121 442.6 1470 30.1
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 6.7e-118 429.9 1413 30.6
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 8.7e-118 429.5 1367 29.5
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 1.5e-114 418.7 1311 29.8
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 5.0e-113 413.7 1365 29.6
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 9.3e-112 409.5 1412 29.0
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 9.3e-112 409.5 1434 29.5
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 1.3e-110 405.6 1450 30.8
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 4.3e-109 400.6 1409 32.6
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 4.1e-107 394.0 1385 28.7
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.2e-106 392.5 1366 29.5
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 1.5e-106 392.1 1413 28.6
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 2.0e-106 391.7 1254 30.7
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 4.5e-106 390.6 1470 28.6
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 4.5e-106 390.6 1362 29.4
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 3.8e-105 387.5 1395 29.4
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 9.4e-104 382.9 1473 28.0
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 9.4e-104 382.9 1408 28.7
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 2.8e-100 371.3 1332 29.4
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 2.0e-98 365.2 1421 28.1
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 5.9e-98 363.6 1343 28.9
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.3e-97 362.5 1343 28.9
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 8.5e-97 359.8 1344 28.8
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 1.4e-96 359.0 1362 27.3
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 2.5e-96 358.2 1237 29.2
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 1.6e-95 355.5 1241 29.2
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 6.1e-95 353.6 1346 28.5
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 9.1e-91 339.7 1335 28.2
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 4.5e-90 337.4 1387 28.6
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 5.0e-89 334.0 1370 26.4
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 6.5e-89 333.6 1343 27.5
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.1e-88 332.8 1336 28.6
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 4.2e-88 330.9 1375 26.3
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 1.6e-87 328.9 1490 26.8
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 2.7e-87 328.2 1379 27.6
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 5.7e-85 320.5 1252 28.7
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 2.2e-84 318.5 1288 27.3
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 8.2e-84 316.6 1383 27.7
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 5.9e-82 310.5 1125 28.9
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 1.3e-81 309.3 1275 28.6
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 3.8e-81 307.8 1283 28.2
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 5.0e-81 307.4 1256 27.0
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.5e-80 305.1 1249 28.4
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 6.1e-79 300.4 1278 27.5
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 8.0e-79 300.1 1361 27.1
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.4e-78 299.3 1276 27.0
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 5.2e-78 297.4 1317 26.9
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 5.7e-77 293.9 1228 28.8
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 9.8e-77 293.1 1257 28.1
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 9.8e-77 293.1 1257 28.1
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 6.3e-76 290.4 1334 26.3
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 4.5e-74 284.3 1386 24.7
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 8.6e-73 280.0 1216 27.1
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 2.5e-72 278.5 1339 27.1
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 2.8e-71 275.0 1347 26.8
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 4.7e-71 274.2 1174 27.5
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 4.9e-68 264.2 1357 25.4
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 1.8e-67 262.3 1334 25.9
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 2.9e-65 255.0 514 34.0
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 8.6e-65 253.4 1389 24.9
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 1.9e-64 252.3 415 38.3
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 9.5e-64 250.0 424 38.7
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 9.5e-64 250.0 424 38.7
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 9.5e-64 250.0 1547 26.2
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.5e-61 242.7 443 36.3
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.9e-59 235.7 1142 26.0
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 2.5e-56 225.3 443 35.2
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 2.1e-55 222.2 348 39.4
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 3.6e-55 221.5 256 51.2
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 6.8e-54 217.2 554 30.9
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 8.9e-54 216.9 426 32.4
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 1.5e-53 216.1 1319 26.5
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 2.6e-53 215.3 1310 25.6
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.7e-52 211.5 1121 26.7
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 3.7e-52 211.5 1312 23.2
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 2.7e-50 205.3 1230 24.9
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 7.8e-50 203.8 411 33.6
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 2.3e-49 202.2 486 33.1
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 3.0e-49 201.8 472 32.2
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.1e-47 195.7 1392 22.7
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.4e-46 193.0 1227 24.7
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 4.0e-46 191.4 1375 22.5
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 9.9e-45 186.8 310 37.7
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 1.1e-43 183.3 1321 23.3
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.3e-41 176.4 313 42.2
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 3.0e-41 175.3 1304 23.5
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 1.1e-40 173.3 1273 23.3
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 2.5e-40 172.2 270 36.3
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 4.3e-40 171.4 310 40.0
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 8.1e-39 167.2 389 30.1
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 1.8e-38 166.0 307 34.5
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 2.4e-38 165.6 279 39.1
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 2.9e-36 158.7 1243 22.0
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 5.4e-35 154.5 293 34.8
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 3.0e-33 148.7 266 39.8
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 6.2e-31 141.0 1243 24.5
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 1.4e-30 139.8 262 40.1
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 5.4e-27 127.9 133 59.4
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 5.4e-27 127.9 133 59.4
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 1.8e-22 112.8 259 35.5
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 1.2e-21 110.2 379 28.8
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 1.3e-20 106.7 141 44.0
A03p44260 Brassica napus HOM05D005171 ORTHO05D041371 3.8e-20 105.1 87 62.1
BraA03t13556Z Brassica rapa HOM05D005171 ORTHO05D041371 3.8e-20 105.1 87 62.1
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 1.8e-17 96.3 143 39.9
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 5.1e-17 94.7 137 50.4
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 6.7e-17 94.4 141 38.3
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.8e-15 89.0 130 46.2
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 8.1e-15 87.4 315 28.6
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 9.0e-14 84.0 129 38.0
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 5.5e-11 74.7 149 31.5
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 1.0e-09 70.5 91 46.2
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 8.7e-09 67.4 90 40.0
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 8.7e-09 67.4 70 51.4
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 8.7e-09 67.4 113 40.7
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 2.5e-08 65.9 121 38.8
CDE02G3322 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 8.2e-07 60.8 130 33.8
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 8.2e-07 60.8 106 34.0
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.1e-06 60.5 125 33.6
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.4e-06 59.3 223 31.8


User provided reference genes

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