Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 2.4e-102 375.6 197 100.0
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 3.2e-94 348.6 200 92.5
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 1.3e-84 316.6 200 84.0
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 8.1e-82 307.4 201 84.1
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 8.1e-82 307.4 201 84.1
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 4.0e-81 305.1 201 84.6
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 4.0e-81 305.1 201 84.6
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 1.2e-80 303.5 201 83.1
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 1.4e-73 280.0 202 77.7
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 1.2e-69 266.9 201 76.1
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 3.0e-68 262.3 202 73.3
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 3.1e-65 252.3 199 71.9
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 9.9e-56 220.7 204 64.2
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 5.6e-51 204.9 203 61.6
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 8.1e-50 201.1 161 65.8
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 1.4e-49 200.3 160 65.0
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 9.0e-49 197.6 161 65.8
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 5.8e-48 194.9 161 64.0
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 5.8e-48 194.9 172 63.4
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 1.7e-47 193.4 198 57.6
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 2.9e-47 192.6 211 55.9
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 1.4e-46 190.3 201 56.7
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.4e-46 190.3 201 56.7
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 3.2e-46 189.1 196 56.1
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 4.2e-46 188.7 199 56.8
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 5.5e-46 188.3 196 55.1
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 5.5e-46 188.3 182 59.9
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 7.1e-46 188.0 182 59.3
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 1.2e-45 187.2 164 63.4
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 2.1e-45 186.4 170 62.4
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 3.5e-45 185.7 173 61.3
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 4.6e-45 185.3 151 62.9
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 6.0e-45 184.9 182 59.9
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.0e-44 184.1 206 53.9
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.8e-44 183.3 190 56.3
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 2.3e-44 183.0 219 52.1
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 3.0e-44 182.6 192 56.2
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 3.0e-44 182.6 185 57.8
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 3.0e-44 182.6 190 55.8
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 6.7e-44 181.4 212 54.2
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 6.7e-44 181.4 206 55.8
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 8.7e-44 181.0 187 56.1
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 1.5e-43 180.3 227 52.0
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 4.3e-43 178.7 177 58.8
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 4.3e-43 178.7 167 59.9
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 5.7e-43 178.3 199 55.8
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 9.6e-43 177.6 206 53.4
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 1.3e-42 177.2 193 55.4
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 1.6e-42 176.8 222 51.4
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 2.1e-42 176.4 117 74.4
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 2.8e-42 176.0 208 51.0
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 3.7e-42 175.6 199 56.8
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 6.2e-42 174.9 151 62.3
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 6.2e-42 174.9 200 51.0
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 8.2e-42 174.5 199 55.8
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.1e-41 174.1 195 55.9
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 1.1e-41 174.1 151 62.3
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 1.1e-41 174.1 188 52.1
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 1.1e-41 174.1 195 52.8
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.8e-41 173.3 151 60.9
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.8e-41 173.3 182 56.0
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.8e-41 173.3 204 52.5
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 3.1e-41 172.6 150 60.7
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 3.1e-41 172.6 146 62.3
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 4.0e-41 172.2 141 64.5
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 4.0e-41 172.2 202 52.5
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 6.9e-41 171.4 187 52.9
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 9.0e-41 171.0 211 51.2
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 1.2e-40 170.6 214 51.9
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 2.6e-40 169.5 188 53.7
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 4.5e-40 168.7 153 58.8
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 7.6e-40 167.9 198 52.5
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 1.0e-39 167.5 218 52.8
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.0e-39 167.5 146 63.0
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.3e-39 167.2 110 73.6
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 1.7e-39 166.8 107 72.9
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 2.2e-39 166.4 202 51.0
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 2.2e-39 166.4 149 55.7
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 3.8e-39 165.6 190 49.5
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 5.0e-39 165.2 182 53.3
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 6.5e-39 164.9 118 69.5
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 8.4e-39 164.5 199 49.2
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 8.4e-39 164.5 195 51.8
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 1.1e-38 164.1 196 51.0
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 1.1e-38 164.1 202 51.0
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 1.1e-38 164.1 112 68.8
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 2.5e-38 162.9 201 54.2
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 2.5e-38 162.9 213 49.8
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 3.2e-38 162.5 106 73.6
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 4.2e-38 162.2 185 51.4
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 5.5e-38 161.8 182 52.2
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 5.5e-38 161.8 182 52.7
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 7.1e-38 161.4 191 52.4
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 9.3e-38 161.0 190 52.1
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 1.2e-37 160.6 197 51.3
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 1.2e-37 160.6 202 52.0
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 1.2e-37 160.6 203 53.2
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 1.6e-37 160.2 153 55.6
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 3.5e-37 159.1 190 51.6
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 1.9e-35 153.3 153 49.7
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 4.3e-35 152.1 106 59.4
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 3.4e-32 142.5 166 54.2
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 1.3e-31 140.6 200 46.0
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.4e-30 137.1 126 61.9
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 2.5e-30 136.3 88 73.9
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 3.2e-30 136.0 158 53.2
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 5.7e-27 125.2 125 48.0
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 7.4e-27 124.8 145 52.4
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 2.2e-26 123.2 115 51.3
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 1.4e-25 120.6 109 52.3
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 3.1e-25 119.4 101 50.5
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 7.2e-22 108.2 135 51.1
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.1e-17 94.4 134 48.5
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 1.2e-16 90.9 72 59.7
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 2.8e-10 69.7 138 44.2
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 2.6e-08 63.2 130 40.8
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 1.7e-07 60.5 108 46.3
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.9e-06 57.0 39 71.8


User provided reference genes

Program Settings