Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 0.0e+00 1142.1 601 100.0
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 0.0e+00 1110.9 601 97.0
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 0.0e+00 1087.0 603 94.4
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1082.4 601 93.3
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 0.0e+00 1082.4 601 93.3
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 0.0e+00 1078.5 603 95.4
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 0.0e+00 1077.0 601 95.0
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 4.1e-312 1074.3 604 93.9
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 4.5e-309 1063.9 601 93.8
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 3.2e-307 1057.7 601 93.7
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 9.4e-307 1056.2 602 93.5
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 2.0e-304 1048.5 602 92.9
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 2.0e-304 1048.5 602 92.9
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 2.0e-304 1048.5 602 92.9
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 3.7e-303 1044.3 601 90.3
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 4.8e-303 1043.9 601 90.0
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 9.4e-299 1029.6 608 88.5
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.1e-294 1016.1 603 88.6
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 3.8e-292 1007.7 610 87.0
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.1e-282 975.3 552 89.9
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 9.1e-278 959.9 552 91.7
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 1.5e-267 926.0 610 79.0
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 3.3e-259 898.3 601 79.4
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 3.6e-258 894.8 601 78.9
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 4.7e-258 894.4 601 77.9
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 8.0e-258 893.6 605 78.7
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 2.3e-257 892.1 601 78.9
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 4.0e-257 891.3 600 77.8
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 5.2e-257 891.0 600 77.5
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 8.9e-257 890.2 601 77.2
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 4.4e-256 887.9 601 75.9
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 5.8e-256 887.5 593 79.4
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 1.7e-255 885.9 606 75.7
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.4e-254 882.9 607 76.4
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 4.1e-254 881.3 602 76.9
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 4.1e-254 881.3 604 76.2
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.1e-254 881.3 601 76.4
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 5.4e-254 880.9 601 77.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 5.4e-254 880.9 601 75.9
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.4e-254 880.9 604 76.2
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 7.0e-254 880.6 602 77.1
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 9.2e-254 880.2 606 77.1
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.6e-253 879.4 601 76.0
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.0e-253 877.5 607 75.9
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 7.8e-253 877.1 603 76.8
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 5.0e-252 874.4 607 75.9
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 1.9e-251 872.5 602 77.1
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.8e-250 868.6 601 74.5
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 2.8e-250 868.6 599 77.0
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 2.8e-250 868.6 601 75.5
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 4.7e-250 867.8 599 76.6
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 4.7e-250 867.8 602 76.4
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 6.2e-250 867.5 604 75.5
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.8e-249 865.9 602 76.9
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.0e-248 862.4 606 74.6
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 4.4e-248 861.3 609 74.9
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 3.7e-247 858.2 612 74.2
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 6.4e-247 857.4 605 75.4
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 7.1e-246 854.0 603 75.8
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.1e-245 852.4 606 73.9
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.7e-245 852.0 605 74.0
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 3.5e-245 851.7 605 73.9
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 4.6e-245 851.3 603 73.6
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.8e-245 850.5 615 70.4
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 7.8e-245 850.5 605 73.7
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.3e-244 849.0 615 70.4
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 8.6e-244 847.0 600 75.7
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 8.6e-244 847.0 600 75.7
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.5e-243 845.5 600 74.2
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 3.3e-243 845.1 594 73.6
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.3e-243 844.0 607 73.8
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.1e-242 842.4 600 74.3
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.1e-242 842.4 600 74.2
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 4.7e-242 841.3 600 74.3
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.8e-241 839.3 495 91.9
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 3.1e-241 838.6 603 72.6
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 6.8e-241 837.4 600 72.8
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 1.2e-240 836.6 600 73.3
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.0e-240 835.9 601 73.7
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 2.0e-240 835.9 603 73.8
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 2.6e-240 835.5 603 74.1
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.3e-239 833.2 600 74.3
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.3e-239 833.2 602 72.9
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 3.2e-238 828.6 618 72.8
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.6e-237 826.2 606 73.6
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 4.6e-237 824.7 600 72.0
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 7.8e-237 823.9 600 73.2
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 8.6e-236 820.5 607 71.7
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.5e-235 819.7 613 70.3
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.2e-234 816.6 606 71.9
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.2e-234 816.6 619 70.3
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 2.1e-234 815.8 600 71.8
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 4.7e-234 814.7 600 73.3
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 6.2e-234 814.3 599 71.5
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 8.9e-233 810.4 600 72.5
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.2e-232 810.1 594 71.2
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 3.4e-232 808.5 600 72.3
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 2.9e-231 805.4 600 71.2
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 3.5e-229 798.5 600 71.2
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 1.7e-228 796.2 608 69.7
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 3.6e-226 788.5 602 71.6
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 4.8e-226 788.1 601 68.4
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 6.9e-225 784.3 606 69.5
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 3.4e-224 781.9 601 69.4
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 9.9e-224 780.4 606 68.8
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 6.4e-223 777.7 604 70.0
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.0e-220 768.8 604 69.4
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.1e-219 766.9 616 67.0
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.5e-219 766.5 602 65.9
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 9.6e-219 763.8 613 69.2
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 1.6e-218 763.1 648 64.8
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 2.1e-218 762.7 616 67.7
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.4e-214 749.2 606 66.7
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.5e-211 739.2 619 65.8
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 1.2e-208 730.3 601 66.2
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 2.1e-205 719.5 531 73.4
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.0e-204 717.2 600 66.8
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 1.6e-202 709.9 601 65.7
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 8.2e-202 707.6 601 65.2
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.0e-196 690.6 569 65.2
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.5e-195 686.0 474 75.3
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.2e-171 607.4 606 57.8
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 4.0e-156 555.8 607 52.4
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 2.2e-154 550.1 606 51.7
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.3e-151 540.8 522 60.7
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.3e-143 514.2 605 51.2
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 9.5e-134 481.5 619 44.1
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 5.8e-131 472.2 601 50.4
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.4e-124 451.1 593 45.2
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.3e-87 328.2 209 77.0
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 4.8e-85 319.7 243 65.8
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 1.0e-82 312.0 324 52.8
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 9.1e-76 288.9 629 34.5
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 7.4e-62 242.7 589 31.6
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 3.1e-60 237.3 241 61.0
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 5.3e-60 236.5 213 61.0
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 3.8e-50 203.8 147 68.7
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.7e-48 197.6 151 70.2
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 1.1e-33 149.1 79 92.4
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 9.5e-33 146.0 79 91.1
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 3.1e-31 141.0 201 43.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 5.2e-31 140.2 98 66.3
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 5.8e-30 136.7 627 23.9
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.4e-20 105.5 72 69.4
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.4e-15 89.0 114 42.1
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 5.2e-15 87.0 217 41.9
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.2e-11 75.9 93 49.5
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 6.6e-10 70.1 59 61.0


User provided reference genes

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