Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G40300 Arabidopsis lyrata HOM05D003373 ORTHO05D013173 1.1e-88 330.1 181 100.0
AT3G24690 Arabidopsis thaliana HOM05D003373 ORTHO05D013173 5.2e-51 204.9 159 79.2
C03p36240 Brassica napus HOM05D003373 ORTHO05D013173 4.4e-42 175.3 159 70.4
BolC3t15933H Brassica oleracea HOM05D003373 ORTHO05D013173 4.4e-42 175.3 159 70.4
A03p29950 Brassica napus HOM05D003373 ORTHO05D013173 1.7e-38 163.3 158 67.1
BcaB01g01800 Brassica carinata HOM05D003373 ORTHO05D013173 2.8e-36 156.0 161 64.0
A09p26380 Brassica napus HOM05D003373 ORTHO05D013173 2.0e-34 149.8 163 63.8
BraA09t38212Z Brassica rapa HOM05D003373 ORTHO05D013173 2.0e-34 149.8 163 63.8
BraA03t12184Z Brassica rapa HOM05D003373 ORTHO05D013173 2.2e-33 146.4 159 64.2
BcaC04g21286 Brassica carinata HOM05D003373 ORTHO05D013173 1.2e-31 140.6 163 61.3
C09p33540 Brassica napus HOM05D003373 ORTHO05D013173 1.5e-29 133.7 163 58.3
BolC9t56189H Brassica oleracea HOM05D003373 ORTHO05D013173 1.5e-29 133.7 163 58.3
Thhalv10029189m.g Eutrema salsugineum HOM05D003373 ORTHO05D013173 4.7e-20 102.1 157 52.2
AL1G38400 Arabidopsis lyrata HOM05D003373 ORTHO05D004419 6.8e-19 98.2 96 59.4
AT1G27090 Arabidopsis thaliana HOM05D003373 ORTHO05D004419 6.8e-19 98.2 96 59.4
Nitab4.5_0000710g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.5e-18 97.1 73 74.0
MELO3C012054.2 Cucumis melo HOM05D003373 ORTHO05D004419 5.8e-18 95.1 106 53.8
Thecc.02G234000 Theobroma cacao HOM05D003373 ORTHO05D004419 5.8e-18 95.1 73 74.0
Zm00001eb053410 Zea mays HOM05D003373 ORTHO05D004419 7.5e-18 94.7 74 67.6
EL10Ac6g13134 Beta vulgaris HOM05D003373 ORTHO05D004419 1.3e-17 94.0 81 65.4
Duzib248G1211 Durio zibethinus HOM05D003373 ORTHO05D004419 1.3e-17 94.0 118 53.4
Gohir.D05G323100 Gossypium hirsutum HOM05D003373 ORTHO05D004419 1.3e-17 94.0 73 71.2
Gorai.009G346800 Gossypium raimondii HOM05D003373 ORTHO05D004419 1.3e-17 94.0 73 71.2
Thhalv10007745m.g Eutrema salsugineum HOM05D003373 ORTHO05D004419 1.7e-17 93.6 113 53.1
THA.LOC104822090 Tarenaya hassleriana HOM05D003373 ORTHO05D004419 2.2e-17 93.2 75 68.0
Zm00001eb217180 Zea mays HOM05D003373 ORTHO05D004419 2.2e-17 93.2 74 66.2
BraA09t39545Z Brassica rapa HOM05D003373 ORTHO05D006520 2.9e-17 92.8 101 56.4
Carub.0001s2388 Capsella rubella HOM05D003373 ORTHO05D004419 2.9e-17 92.8 118 50.8
Gorai.012G121700 Gossypium raimondii HOM05D003373 ORTHO05D004419 2.9e-17 92.8 72 70.8
Nitab4.5_0003297g0010 Nicotiana tabacum HOM05D003373 ORTHO05D004419 2.9e-17 92.8 93 62.4
BcaB03g11980 Brassica carinata HOM05D003373 ORTHO05D004419 3.7e-17 92.4 75 69.3
BcaC05g26344 Brassica carinata HOM05D003373 ORTHO05D004419 3.7e-17 92.4 75 69.3
BolC5t31088H Brassica oleracea HOM05D003373 ORTHO05D004419 3.7e-17 92.4 75 69.3
Sp1g21690 Schrenkiella parvula HOM05D003373 ORTHO05D004419 3.7e-17 92.4 117 49.6
A08p27730 Brassica napus HOM05D003373 ORTHO05D004419 4.9e-17 92.0 100 57.0
A09p40480 Brassica napus HOM05D003373 ORTHO05D004419 4.9e-17 92.0 101 56.4
Duzib268G0991 Durio zibethinus HOM05D003373 ORTHO05D004419 4.9e-17 92.0 106 54.7
Gohir.A04G097600 Gossypium hirsutum HOM05D003373 ORTHO05D004419 4.9e-17 92.0 73 69.9
Ciclev10031519m.g Citrus clementina HOM05D003373 ORTHO05D004419 6.4e-17 91.7 101 56.4
CsaV3_5G032210 Cucumis sativus L. HOM05D003373 ORTHO05D004419 6.4e-17 91.7 107 52.3
Duzib251G0793 Durio zibethinus HOM05D003373 ORTHO05D004419 6.4e-17 91.7 106 54.7
Actinidia31168 Actinidia chinensis HOM05D003373 ORTHO05D004419 8.3e-17 91.3 77 66.2
QL03p066330 Quercus lobata HOM05D003373 ORTHO05D004419 8.3e-17 91.3 73 69.9
Cfa009067 Carpinus fangiana HOM05D003373 ORTHO05D004419 1.4e-16 90.5 77 61.0
BraA08t34708Z Brassica rapa HOM05D003373 ORTHO05D004419 1.9e-16 90.1 100 56.0
Hma1.2p1_1045F.1_g251400 Hydrangea macrophylla HOM05D003373 ORTHO05D004419 1.9e-16 90.1 78 62.8
Cc11_g13620 Coffea canephora HOM05D003373 ORTHO05D004419 2.4e-16 89.7 74 67.6
Gohir.A05G320900 Gossypium hirsutum HOM05D003373 ORTHO05D004419 2.4e-16 89.7 109 54.1
PGR102G0330 Punica granatum HOM05D003373 ORTHO05D004419 2.4e-16 89.7 112 52.7
CiPaw.05G141000 Carya illinoinensis HOM05D003373 ORTHO05D004419 3.2e-16 89.4 76 64.5
Haze_12097 Corylus avellana HOM05D003373 ORTHO05D004419 3.2e-16 89.4 77 61.0
Sopen05g002860 Solanum pennellii HOM05D003373 ORTHO05D004419 3.2e-16 89.4 109 52.3
ClCG05G024690 Citrullus lanatus HOM05D003373 ORTHO05D004419 5.4e-16 88.6 120 50.0
COL.COLO4_36201 Corchorus olitorius HOM05D003373 ORTHO05D004419 5.4e-16 88.6 110 52.7
Atru.chr11.1870 Acer truncatum HOM05D003373 ORTHO05D004419 7.1e-16 88.2 69 65.2
arahy.Tifrunner.gnm1.ann1.NIK4ZB Arachis hypogaea HOM05D003373 ORTHO05D004419 7.1e-16 88.2 77 62.3
C05p23700 Brassica napus HOM05D003373 ORTHO05D004419 7.1e-16 88.2 111 52.3
unitig_52.g17172 Utricularia gibba HOM05D003373 ORTHO05D004419 7.1e-16 88.2 95 57.9
BcaC07g39253 Brassica carinata HOM05D003373 ORTHO05D004419 9.2e-16 87.8 100 59.0
Gohir.D04G137300 Gossypium hirsutum HOM05D003373 ORTHO05D004419 9.2e-16 87.8 112 51.8
Nitab4.5_0002382g0020 Nicotiana tabacum HOM05D003373 ORTHO05D004419 9.2e-16 87.8 89 57.3
Solyc05g006900.2 Solanum lycopersicum HOM05D003373 ORTHO05D004419 9.2e-16 87.8 109 52.3
arahy.Tifrunner.gnm1.ann1.YF4WKN Arachis hypogaea HOM05D003373 ORTHO05D004419 1.2e-15 87.4 77 62.3
CARHR024810 Cardamine hirsuta HOM05D003373 ORTHO05D004419 1.2e-15 87.4 75 65.3
Nn3g17111 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.2e-15 87.4 120 47.5
Nitab4.5_0008971g0050 Nicotiana tabacum HOM05D003373 ORTHO05D004419 1.2e-15 87.4 109 54.1
MSTRG.2363 Avicennia marina HOM05D003373 ORTHO05D004419 1.6e-15 87.0 110 53.6
DCAR_007126 Daucus carota HOM05D003373 ORTHO05D004419 1.6e-15 87.0 90 60.0
Lj3A1043T79 Lonicera japonica HOM05D003373 ORTHO05D004419 1.6e-15 87.0 101 54.5
Lalb_Chr10g0097901 Lupinus albus HOM05D003373 ORTHO05D004419 1.6e-15 87.0 73 67.1
CDE08G0466 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 2.1e-15 86.7 75 64.0
CDE09G0772 Ceratophyllum demersum HOM05D003373 ORTHO05D004419 2.1e-15 86.7 73 65.8
Haze_17060 Corylus avellana HOM05D003373 ORTHO05D004419 2.1e-15 86.7 77 59.7
Lj2g0024788 Lotus japonicus HOM05D003373 ORTHO05D004419 2.1e-15 86.7 104 55.8
Psat2g126240 Pisum sativum HOM05D003373 ORTHO05D004419 2.1e-15 86.7 92 55.4
vmacro16318 Vaccinium macrocarpon HOM05D003373 ORTHO05D004419 2.1e-15 86.7 111 51.4
Ah.02g131980 Amaranthus hybridus HOM05D003373 ORTHO05D004419 2.7e-15 86.3 73 65.8
BcaB07g32385 Brassica carinata HOM05D003373 ORTHO05D004419 2.7e-15 86.3 105 52.4
BolC8t49893H Brassica oleracea HOM05D003373 ORTHO05D004419 2.7e-15 86.3 100 58.0
SGA_v2.0_scaffold87G26974 Striga asiatica HOM05D003373 ORTHO05D004419 2.7e-15 86.3 122 51.6
TWI36G0800 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 2.7e-15 86.3 74 62.2
Glyma.01G041300 Glycine max HOM05D003373 ORTHO05D004419 3.5e-15 85.9 72 63.9
Lj6A795T73 Lonicera japonica HOM05D003373 ORTHO05D004419 3.5e-15 85.9 100 49.0
Manes.05G095400 Manihot esculenta HOM05D003373 ORTHO05D004419 3.5e-15 85.9 127 47.2
Potri.010G034900 Populus trichocarpa HOM05D003373 ORTHO05D004419 3.5e-15 85.9 75 64.0
Actinidia04028 Actinidia chinensis HOM05D003373 ORTHO05D004419 4.6e-15 85.5 114 52.6
Sc11g0001580 Simmondsia chinensis HOM05D003373 ORTHO05D004419 4.6e-15 85.5 106 51.9
TPR.G31079 Trifolium pratense HOM05D003373 ORTHO05D004419 4.6e-15 85.5 80 61.2
RcHm_v2.0_Chr4g0445281 Rosa chinensis HOM05D003373 ORTHO05D004419 6.0e-15 85.1 73 63.0
SGA_v2.0_scaffold63G21675 Striga asiatica HOM05D003373 ORTHO05D004419 6.0e-15 85.1 124 52.4
MBI01_g01238_MAGBIO Magnolia biondii HOM05D003373 ORTHO05D004419 7.8e-15 84.7 77 59.7
Dinv24947 Davidia involucrata HOM05D003373 ORTHO05D004419 1.0e-14 84.3 98 51.0
PGSC0003DMG400007711 Solanum tuberosum HOM05D003373 ORTHO05D004419 1.0e-14 84.3 83 59.0
AUR62026466 Chenopodium quinoa HOM05D003373 ORTHO05D004419 1.3e-14 84.0 121 46.3
Dinv34191 Davidia involucrata HOM05D003373 ORTHO05D004419 1.3e-14 84.0 118 46.6
Sabra08G0147700 Salix brachista HOM05D003373 ORTHO05D004419 1.3e-14 84.0 92 57.6
Hund25279 Selenicereus undatus HOM05D003373 ORTHO05D004419 1.3e-14 84.0 75 61.3
PSO017G0861 Papaver somniferum HOM05D003373 ORTHO05D004419 1.7e-14 83.6 69 63.8
PSO478G2017 Papaver somniferum HOM05D003373 ORTHO05D004419 1.7e-14 83.6 69 63.8
Potri.008G194200 Populus trichocarpa HOM05D003373 ORTHO05D004419 1.7e-14 83.6 92 56.5
Cpa.g.sc5.285 Carica papaya HOM05D003373 ORTHO05D004419 2.3e-14 83.2 115 47.8
Migut.L01354 Erythranthe guttata HOM05D003373 ORTHO05D004419 3.0e-14 82.8 92 58.7
MSTRG.13397 Avicennia marina HOM05D003373 ORTHO05D004419 3.9e-14 82.4 111 51.4
Sed0023513 Sechium edule HOM05D003373 ORTHO05D004419 3.9e-14 82.4 96 51.0
Solyc01g010440.4 Solanum lycopersicum HOM05D003373 ORTHO05D004419 3.9e-14 82.4 87 57.5
Sopen01g006060 Solanum pennellii HOM05D003373 ORTHO05D004419 3.9e-14 82.4 87 57.5
CANSAT35G1086 Cannabis sativa HOM05D003373 ORTHO05D004419 5.1e-14 82.0 131 42.7
AUR62026278 Chenopodium quinoa HOM05D003373 ORTHO05D004419 5.1e-14 82.0 121 44.6
TWI18G0023 Tripterygium wilfordii HOM05D003373 ORTHO05D004419 5.1e-14 82.0 109 49.5
Aa31LG4G10950 Aethionema arabicum HOM05D003373 ORTHO05D004419 6.6e-14 81.6 121 46.3
Oeu043029.1 Olea europaea HOM05D003373 ORTHO05D004419 6.6e-14 81.6 59 74.6
Os03g0688200 Oryza sativa ssp. japonica HOM05D003373 ORTHO05D004419 6.6e-14 81.6 74 59.5
Peaxi162Scf00209g00714 Petunia axillaris HOM05D003373 ORTHO05D004419 6.6e-14 81.6 91 56.0
Rhsim12G0129000 Rhododendron simsii HOM05D003373 ORTHO05D004419 6.6e-14 81.6 103 52.4
SalBow2G1107 Salvia bowleyana HOM05D003373 ORTHO05D004419 6.6e-14 81.6 105 53.3
Manes.01G192000 Manihot esculenta HOM05D003373 ORTHO05D004419 8.6e-14 81.3 131 45.0
PSO591G0008 Papaver somniferum HOM05D003373 ORTHO05D004419 8.6e-14 81.3 73 64.4
VMungo1215G0200 Vigna mungo HOM05D003373 ORTHO05D004419 8.6e-14 81.3 114 48.2
Eucgr.B02587 Eucalyptus grandis HOM05D003373 ORTHO05D004419 1.1e-13 80.9 79 60.8
FAN07G0752 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.1e-13 80.9 73 63.0
Lalb_Chr04g0256431 Lupinus albus HOM05D003373 ORTHO05D004419 1.1e-13 80.9 109 47.7
PSO832G2541 Papaver somniferum HOM05D003373 ORTHO05D004419 1.5e-13 80.5 75 61.3
Sabra10G0029900 Salix brachista HOM05D003373 ORTHO05D004419 1.5e-13 80.5 92 53.3
PGSC0003DMG400017635 Solanum tuberosum HOM05D003373 ORTHO05D004419 1.5e-13 80.5 109 49.5
SGA_v2.0_scaffold467G52045 Striga asiatica HOM05D003373 ORTHO05D004419 1.5e-13 80.5 118 49.2
TAR622G0593 Trochodendron aralioides HOM05D003373 ORTHO05D004419 1.5e-13 80.5 130 46.2
unitig_62.g23682 Utricularia gibba HOM05D003373 ORTHO05D004419 1.5e-13 80.5 94 54.3
HPP92_019601 Vanilla planifolia HOM05D003373 ORTHO05D004419 1.5e-13 80.5 106 50.9
HPP92_019651 Vanilla planifolia HOM05D003373 ORTHO05D004419 1.5e-13 80.5 106 50.9
FvH4_4g35680 Fragaria vesca HOM05D003373 ORTHO05D004419 1.9e-13 80.1 73 61.6
FAN22G0404 Fragaria x ananassa HOM05D003373 ORTHO05D004419 1.9e-13 80.1 73 61.6
Nn4g23016 Nelumbo nucifera HOM05D003373 ORTHO05D004419 1.9e-13 80.1 122 43.4
Phvul.002G067800 Phaseolus vulgaris HOM05D003373 ORTHO05D004419 1.9e-13 80.1 69 62.3
Medtr5g037960 Medicago truncatula HOM05D003373 ORTHO05D004419 2.5e-13 79.7 107 48.6
SGA_v2.0_scaffold166G38286 Striga asiatica HOM05D003373 ORTHO05D004419 2.5e-13 79.7 92 55.4
Migut.E00120 Erythranthe guttata HOM05D003373 ORTHO05D004419 3.3e-13 79.3 124 47.6
FAN17G1936 Fragaria x ananassa HOM05D003373 ORTHO05D004419 3.3e-13 79.3 73 61.6
ATR0665G354 Amborella trichopoda HOM05D003373 ORTHO05D004419 4.3e-13 79.0 69 59.4
PGR119G0099 Punica granatum HOM05D003373 ORTHO05D004419 4.3e-13 79.0 71 59.2
PGSC0003DMG400010979 Solanum tuberosum HOM05D003373 ORTHO05D013173 4.3e-13 79.0 73 61.6
TAR374G1081 Trochodendron aralioides HOM05D003373 ORTHO05D004419 4.3e-13 79.0 124 45.2
FAN12G3521 Fragaria x ananassa HOM05D003373 ORTHO05D004419 5.6e-13 78.6 73 60.3
Ca_04701_v3 Cicer arietinum L. HOM05D003373 ORTHO05D004419 7.3e-13 78.2 109 46.8
Oeu057174.1 Olea europaea HOM05D003373 ORTHO05D004419 7.3e-13 78.2 121 43.8
MD16G1080200 Malus domestica HOM05D003373 ORTHO05D004419 9.6e-13 77.8 91 51.6
CSS0018229 Camellia sinensis var. sinensis HOM05D003373 ORTHO05D004419 1.2e-12 77.4 105 49.5
Glyma.02G022800 Glycine max HOM05D003373 ORTHO05D004419 1.2e-12 77.4 118 47.5
Lalb_Chr17g0340241 Lupinus albus HOM05D003373 ORTHO05D004419 1.2e-12 77.4 76 56.6
GSVIVG01020088001 Vitis vinifera HOM05D003373 ORTHO05D004419 1.6e-12 77.0 55 69.1
MD13G1080700 Malus domestica HOM05D003373 ORTHO05D004419 2.1e-12 76.6 102 48.0
SalBow3G2377 Salvia bowleyana HOM05D003373 ORTHO05D004419 2.1e-12 76.6 64 67.2
Lsat_1_v5_gn_4_9400 Lactuca sativa HOM05D003373 ORTHO05D004419 6.2e-12 75.1 130 42.3
TAR629G0400 Trochodendron aralioides HOM05D003373 ORTHO05D004419 6.2e-12 75.1 121 45.5
HanXRQChr17g0570411 Helianthus annuus HOM05D003373 ORTHO05D004419 2.4e-11 73.2 78 53.8
DCAR_031055 Daucus carota HOM05D003373 ORTHO05D004419 4.0e-11 72.4 93 50.5
VMungo0540G1512 Vigna mungo HOM05D003373 ORTHO05D013173 5.2e-11 72.0 114 45.6
Pp3c16_590 Physcomitrium patens HOM05D003373 ORTHO05D004419 6.8e-11 71.6 99 44.4
SEGI_31454 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 1.2e-10 70.9 78 51.3
Aqoxy3G03242 Aquilegia oxysepala HOM05D003373 ORTHO05D004419 2.0e-10 70.1 104 45.2
Lsat_1_v5_gn_8_163340 Lactuca sativa HOM05D003373 ORTHO05D004419 3.4e-10 69.3 122 39.3
VMungo0464G1165 Vigna mungo HOM05D003373 ORTHO05D004419 9.9e-10 67.8 114 43.9
SMO141G0251 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 2.2e-09 66.6 105 42.9
SEGI_00885 Sequoiadendron giganteum HOM05D003373 ORTHO05D004419 3.8e-09 65.9 126 35.7
SMO012G0008 Selaginella moellendorffii HOM05D003373 ORTHO05D004419 8.4e-09 64.7 100 45.0
Mapoly0083s0034 Marchantia polymorpha HOM05D003373 ORTHO05D004419 1.9e-08 63.5 149 35.6
Lsat_1_v5_gn_8_36201 Lactuca sativa HOM05D003373 ORTHO05D004419 2.4e-08 63.2 114 38.6
Pp3c25_8180 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.4e-08 63.2 145 37.2
Pp3c25_8182 Physcomitrium patens HOM05D003373 ORTHO05D004419 2.4e-08 63.2 145 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3903 Anthoceros agrestis HOM05D003373 ORTHO05D004419 3.2e-08 62.8 88 42.0
CBR_g4061 Chara braunii HOM05D003373 ORTHO05D004419 3.2e-08 62.8 98 38.8
HanXRQChr03g0092821 Helianthus annuus HOM05D003373 ORTHO05D004419 5.4e-08 62.0 112 39.3
ECA234G3640 Erigeron canadensis HOM05D003373 ORTHO05D004419 4.6e-07 58.9 108 40.7
SalBow8G0803 Salvia bowleyana HOM05D003373 ORTHO05D004419 8.7e-06 54.7 66 59.1


User provided reference genes

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