Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 9.2e-48 193.7 94 100.0
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.1e-28 129.4 103 71.8
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.9e-24 116.3 94 71.3
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 5.8e-18 94.7 99 61.6
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 5.8e-18 94.7 99 61.6
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 5.8e-18 94.7 99 61.6
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.0e-17 94.0 83 65.1
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.2e-17 92.8 90 58.9
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.9e-17 92.4 85 58.8
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.9e-17 92.4 90 57.8
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 4.9e-17 91.7 99 60.6
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 6.5e-17 91.3 46 93.5
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.5e-17 91.3 90 58.9
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.5e-17 91.3 90 57.8
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 8.4e-17 90.9 100 59.0
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 8.4e-17 90.9 46 93.5
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 8.4e-17 90.9 46 93.5
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 8.4e-17 90.9 46 93.5
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 8.4e-17 90.9 90 57.8
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 8.4e-17 90.9 51 86.3
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.1e-16 90.5 90 57.8
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 1.4e-16 90.1 100 60.0
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 1.9e-16 89.7 54 85.2
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 1.9e-16 89.7 54 85.2
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.9e-16 89.7 79 62.0
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 2.5e-16 89.4 86 55.8
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 7.1e-16 87.8 48 85.4
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.6e-15 86.7 90 60.0
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 2.1e-15 86.3 90 56.7
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.5e-15 85.5 88 55.7
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 4.6e-15 85.1 90 55.6
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-14 84.0 52 76.9
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 1.0e-14 84.0 52 76.9
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.0e-14 84.0 94 50.0
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 1.0e-14 84.0 86 57.0
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.0e-14 84.0 77 58.4
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 1.0e-14 84.0 87 54.0
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.3e-14 83.6 59 78.0
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.3e-14 83.6 74 59.5
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.8e-14 83.2 48 79.2
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 1.8e-14 83.2 78 56.4
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 3.0e-14 82.4 51 78.4
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 3.0e-14 82.4 83 57.8
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 3.0e-14 82.4 92 56.5
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.9e-14 82.0 52 75.0
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 5.1e-14 81.6 102 50.0
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 5.1e-14 81.6 42 85.7
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.7e-14 81.3 41 87.8
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 6.7e-14 81.3 41 87.8
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 6.7e-14 81.3 44 77.3
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 6.7e-14 81.3 49 79.6
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 6.7e-14 81.3 42 81.0
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 6.7e-14 81.3 87 54.0
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 8.7e-14 80.9 46 80.4
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 8.7e-14 80.9 78 53.8
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 8.7e-14 80.9 90 54.4
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 8.7e-14 80.9 55 70.9
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 1.1e-13 80.5 79 50.6
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.1e-13 80.5 39 92.3
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 1.1e-13 80.5 39 92.3
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.5e-13 80.1 93 51.6
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.5e-13 80.1 42 85.7
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.5e-13 80.1 42 85.7
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 1.5e-13 80.1 42 85.7
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.5e-13 80.1 109 44.0
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 1.9e-13 79.7 42 83.3
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.9e-13 79.7 94 54.3
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.9e-13 79.7 98 50.0
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 1.9e-13 79.7 62 61.3
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 1.9e-13 79.7 64 64.1
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 2.5e-13 79.3 56 67.9
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 2.5e-13 79.3 63 66.7
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 3.3e-13 79.0 109 45.0
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 3.3e-13 79.0 63 63.5
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 4.3e-13 78.6 42 81.0
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 4.3e-13 78.6 86 51.2
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 5.7e-13 78.2 61 63.9
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 5.7e-13 78.2 110 47.3
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 7.4e-13 77.8 38 89.5
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 9.6e-13 77.4 47 74.5
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 1.3e-12 77.0 40 87.5
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 1.3e-12 77.0 41 82.9
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 1.6e-12 76.6 103 50.5
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.6e-12 76.6 37 89.2
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 2.1e-12 76.3 39 87.2
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 2.1e-12 76.3 38 86.8
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 2.1e-12 76.3 52 63.5
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.8e-12 75.9 38 84.2
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 2.8e-12 75.9 57 64.9
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 3.7e-12 75.5 37 89.2
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 4.8e-12 75.1 38 86.8
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 4.8e-12 75.1 38 84.2
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 4.8e-12 75.1 38 84.2
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 4.8e-12 75.1 38 84.2
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 4.8e-12 75.1 35 94.3
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 6.3e-12 74.7 35 91.4
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 8.2e-12 74.3 39 87.2
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 8.2e-12 74.3 39 82.1
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 8.2e-12 74.3 84 54.8
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 8.2e-12 74.3 35 91.4
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.1e-11 73.9 36 88.9
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.1e-11 73.9 54 63.0
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 1.1e-11 73.9 37 86.5
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 1.4e-11 73.6 36 88.9
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 1.4e-11 73.6 35 91.4
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.8e-11 73.2 93 47.3
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.8e-11 73.2 39 82.1
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 2.4e-11 72.8 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 2.4e-11 72.8 35 91.4
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 2.4e-11 72.8 45 68.9
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 2.4e-11 72.8 94 48.9
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 3.1e-11 72.4 95 48.4
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 3.1e-11 72.4 43 69.8
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 3.1e-11 72.4 39 82.1
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 3.1e-11 72.4 39 82.1
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 4.1e-11 72.0 45 68.9
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 5.3e-11 71.6 83 51.8
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 5.3e-11 71.6 35 91.4
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 6.9e-11 71.2 92 48.9
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 1.2e-10 70.5 36 86.1
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.0e-10 69.7 56 64.3
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 2.6e-10 69.3 104 45.2
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.6e-10 69.3 89 43.8
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 4.5e-10 68.6 35 80.0
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 1.4e-08 63.5 38 71.1
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 3.2e-08 62.4 35 71.4


User provided reference genes

Program Settings