Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G39310 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 1.1e-80 303.1 148 100.0
AT3G24060 Arabidopsis thaliana HOM05D005430 ORTHO05D007814 9.1e-78 293.5 148 96.6
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 1.2e-66 256.5 144 86.8
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 1.4e-65 253.1 148 81.8
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 1.5e-64 249.6 127 91.3
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 2.6e-64 248.8 144 83.3
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 2.6e-64 248.8 144 83.3
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 2.2e-63 245.7 144 81.9
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 4.1e-62 241.5 123 89.4
CARHR100160 Cardamine hirsuta HOM05D005430 ORTHO05D007814 1.6e-61 239.6 149 77.9
C01p39510 Brassica napus HOM05D005430 ORTHO05D007814 1.5e-56 223.0 134 80.6
BolC1t03901H Brassica oleracea HOM05D005430 ORTHO05D007814 4.4e-56 221.5 134 79.9
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 4.2e-51 204.9 141 68.8
FAN17G1087 Fragaria x ananassa HOM05D005430 ORTHO05D007814 5.5e-43 177.9 141 61.0
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 9.5e-43 177.2 140 59.3
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 2.1e-42 176.0 137 61.3
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 2.8e-42 175.6 147 60.5
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 3.6e-42 175.3 139 58.3
FAN07G2372 Fragaria x ananassa HOM05D005430 ORTHO05D007814 3.6e-42 175.3 122 65.6
FvH4_4g05670 Fragaria vesca HOM05D005430 ORTHO05D007814 4.7e-42 174.9 141 58.9
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 4.7e-42 174.9 136 62.5
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 4.7e-42 174.9 136 62.5
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 4.7e-42 174.9 136 62.5
FAN22G2342 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.0e-41 173.7 122 64.8
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 1.8e-41 172.9 137 60.6
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 2.3e-41 172.6 142 58.5
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 4.0e-41 171.8 116 65.5
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 4.0e-41 171.8 139 58.3
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 5.2e-41 171.4 141 57.4
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 6.8e-41 171.0 136 58.8
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 8.9e-41 170.6 140 58.6
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 8.9e-41 170.6 140 57.9
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 1.2e-40 170.2 145 58.6
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 2.6e-40 169.1 142 57.0
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 9.8e-40 167.2 149 56.4
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 1.3e-39 166.8 112 64.3
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 1.3e-39 166.8 142 56.3
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.7e-39 166.4 122 63.1
QL06p023021 Quercus lobata HOM05D005430 ORTHO05D007814 1.7e-39 166.4 122 62.3
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.7e-39 166.4 134 58.2
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 2.8e-39 165.6 138 56.5
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 2.8e-39 165.6 142 58.5
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 6.3e-39 164.5 140 55.0
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 6.3e-39 164.5 122 61.5
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 1.8e-38 162.9 142 54.9
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 2.4e-38 162.5 143 55.9
CsaV3_2G012000 Cucumis sativus L. HOM05D005430 ORTHO05D007814 2.4e-38 162.5 120 62.5
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 3.1e-38 162.2 119 59.7
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 4.1e-38 161.8 112 58.0
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 4.1e-38 161.8 112 61.6
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 7.0e-38 161.0 138 54.3
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 7.0e-38 161.0 138 54.3
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 1.2e-37 160.2 112 60.7
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 3.5e-37 158.7 143 55.2
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 4.5e-37 158.3 146 50.7
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 1.7e-36 156.4 142 54.2
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 2.3e-36 156.0 142 54.9
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 3.8e-36 155.2 135 56.3
Sc13g0002820 Simmondsia chinensis HOM05D005430 ORTHO05D007814 5.0e-36 154.8 139 50.4
MELO3C006342.2 Cucumis melo HOM05D005430 ORTHO05D007814 6.6e-36 154.5 142 54.2
CsaV3_3G011340 Cucumis sativus L. HOM05D005430 ORTHO05D007814 8.6e-36 154.1 114 60.5
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 8.6e-36 154.1 141 54.6
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 1.5e-35 153.3 136 53.7
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 2.5e-35 152.5 136 53.7
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 3.3e-35 152.1 141 52.5
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 4.3e-35 151.8 136 53.7
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 4.3e-35 151.8 142 52.8
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 7.3e-35 151.0 136 52.2
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 1.2e-34 150.2 111 60.4
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 1.2e-34 150.2 137 53.3
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 1.2e-34 150.2 141 51.8
Medtr2g030100 Medicago truncatula HOM05D005430 ORTHO05D007814 2.1e-34 149.4 141 53.2
TPR.G26356 Trifolium pratense HOM05D005430 ORTHO05D007814 2.1e-34 149.4 141 52.5
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 2.8e-34 149.1 141 51.1
Medtr2g030080 Medicago truncatula HOM05D005430 ORTHO05D007814 3.6e-34 148.7 141 50.4
Migut.N00331 Erythranthe guttata HOM05D005430 ORTHO05D007814 8.0e-34 147.5 140 50.0
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 1.4e-33 146.7 140 51.4
CAN.G1745.2 Capsicum annuum HOM05D005430 ORTHO05D007814 2.3e-33 146.0 138 46.4
arahy.Tifrunner.gnm1.ann1.D09HZI Arachis hypogaea HOM05D005430 ORTHO05D007814 4.0e-33 145.2 135 48.1
Oeu033089.1 Olea europaea HOM05D005430 ORTHO05D007814 5.2e-33 144.8 136 52.9
CAN.G706.30 Capsicum annuum HOM05D005430 ORTHO05D007814 6.8e-33 144.4 153 48.4
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 6.8e-33 144.4 116 54.3
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 1.2e-32 143.7 143 49.7
HanXRQChr02g0059521 Helianthus annuus HOM05D005430 ORTHO05D007814 9.8e-32 140.6 145 46.2
Solyc12g098110.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 2.2e-31 139.4 148 48.6
Sopen12g032930 Solanum pennellii HOM05D005430 ORTHO05D007814 6.4e-31 137.9 148 48.0
PGSC0003DMG400016877 Solanum tuberosum HOM05D005430 ORTHO05D007814 1.1e-30 137.1 147 48.3
SGA_v2.0_scaffold2G00855 Striga asiatica HOM05D005430 ORTHO05D007814 7.0e-30 134.4 114 55.3
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 2.0e-29 132.9 143 44.8
vmacro22822 Vaccinium macrocarpon HOM05D005430 ORTHO05D007814 2.5e-27 125.9 112 57.1
Nitab4.5_0008614g0010 Nicotiana tabacum HOM05D005430 ORTHO05D007814 6.8e-25 117.9 121 48.8
SHI00018 Sapria himalayana HOM05D005430 ORTHO05D007814 1.7e-23 113.2 128 46.9
EL10Ac3g06777 Beta vulgaris HOM05D005430 ORTHO05D007814 3.7e-23 112.1 98 51.0
Actinidia25081 Actinidia chinensis HOM05D005430 ORTHO05D007814 2.4e-22 109.4 111 53.2
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 2.0e-16 89.7 138 37.0
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 1.3e-15 87.0 145 35.9
SalBow2G0067 Salvia bowleyana HOM05D005430 ORTHO05D000119 1.9e-14 83.2 112 36.6
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 3.2e-14 82.4 111 34.2
Thecc.04G213200 Theobroma cacao HOM05D005430 ORTHO05D007814 3.2e-14 82.4 143 33.6
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 4.1e-14 82.0 112 34.8
Gohir.D09G053020 Gossypium hirsutum HOM05D005430 ORTHO05D007814 7.1e-14 81.3 141 34.8
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 9.2e-14 80.9 94 40.4
Gohir.A09G053300 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.6e-13 80.1 141 34.0
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.1e-13 79.7 94 40.4
Gorai.006G055400 Gossypium raimondii HOM05D005430 ORTHO05D007814 2.1e-13 79.7 141 34.0
Potri.001G053300 Populus trichocarpa HOM05D005430 ORTHO05D007814 2.1e-13 79.7 146 34.2
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 3.5e-13 79.0 134 33.6
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.5e-13 79.0 94 39.4
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 4.6e-13 78.6 136 33.1
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 4.6e-13 78.6 135 31.1
Oeu024845.1 Olea europaea HOM05D005430 ORTHO05D007814 1.7e-12 76.6 111 32.4
COL.COLO4_05733 Corchorus olitorius HOM05D005430 ORTHO05D007814 2.3e-12 76.3 145 31.7
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.0e-12 75.9 110 35.5
Migut.H02432 Erythranthe guttata HOM05D005430 ORTHO05D000119 3.9e-12 75.5 109 35.8
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.1e-11 73.9 90 38.9
Manes.04G148500 Manihot esculenta HOM05D000256 ORTHO05D000119 1.1e-11 73.9 123 31.7
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 1.1e-11 73.9 139 31.7
COL.COLO4_34098 Corchorus olitorius HOM05D000048 ORTHO05D000207 1.5e-11 73.6 94 37.2
Nitab4.5_0003185g0070 Nicotiana tabacum HOM05D005430 ORTHO05D007814 1.5e-11 73.6 77 46.8
Migut.J01121 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.9e-11 73.2 119 31.9
COL.COLO4_05734 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.3e-11 72.4 148 30.4
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 4.3e-11 72.0 113 31.9
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 5.6e-11 71.6 116 34.5
Peaxi162Scf01007g00016 Petunia axillaris HOM05D000256 ORTHO05D000119 2.1e-10 69.7 137 34.3
Hma1.2p1_0785F.1_g217560 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 3.6e-10 68.9 115 32.2
Potri.010G008300 Populus trichocarpa HOM05D000256 ORTHO05D000119 6.2e-10 68.2 128 28.1
PGR083G1564 Punica granatum HOM05D005430 ORTHO05D007814 8.1e-10 67.8 123 34.1
Duzib151G1037 Durio zibethinus HOM05D005430 ORTHO05D007814 1.1e-09 67.4 110 30.9
Migut.H02436 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.8e-09 66.6 103 34.0
Hma1.2p1_0146F.1_g065590 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 1.8e-09 66.6 121 32.2
Potri.003G201300 Populus trichocarpa HOM05D005430 ORTHO05D000119 1.8e-09 66.6 142 31.7
Eucgr.H00099 Eucalyptus grandis HOM05D010815 ORTHO05D011855 3.1e-09 65.9 111 38.7
Thecc.04G215700 Theobroma cacao HOM05D005430 ORTHO05D007814 3.1e-09 65.9 140 27.9
COL.COLO4_05731 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.2e-09 65.1 142 29.6
unitig_699.g19174 Utricularia gibba HOM05D000256 ORTHO05D000119 8.9e-09 64.3 90 38.9
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 1.2e-08 63.9 115 31.3
Migut.H02457 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.0e-08 63.2 112 31.2
Ciclev10023262m.g Citrus clementina HOM05D005430 ORTHO05D007814 3.4e-08 62.4 83 31.3
Hma1.2p1_1359F.1_g278080 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 3.4e-08 62.4 139 29.5
TPR.G24977 Trifolium pratense HOM05D022600 ORTHO05D000119 3.4e-08 62.4 108 33.3
Hma1.2p1_0903F.1_g234940 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.4e-08 62.0 139 29.5
Rhsim09G0049800 Rhododendron simsii HOM05D000256 ORTHO05D000119 4.4e-08 62.0 138 29.0
TWI14G0081 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 4.4e-08 62.0 127 29.9
Carub.0002s1136 Capsella rubella HOM05D000256 ORTHO05D000119 5.8e-08 61.6 135 28.9
CAN.G742.38 Capsicum annuum HOM05D000256 ORTHO05D000119 5.8e-08 61.6 112 31.2
Gorai.009G341000 Gossypium raimondii HOM05D005430 ORTHO05D007814 7.6e-08 61.2 142 28.9
Hma1.2p1_0146F.1_g065570 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 7.6e-08 61.2 136 29.4
Ciclev10023991m.g Citrus clementina HOM05D000256 ORTHO05D000119 9.9e-08 60.8 121 31.4
Rhsim03G0222400 Rhododendron simsii HOM05D005430 ORTHO05D007814 1.3e-07 60.5 138 26.8
Gohir.D05G318200 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.7e-07 60.1 142 28.2
Lj4g0012468 Lotus japonicus HOM05D000256 ORTHO05D000119 1.7e-07 60.1 143 26.6
CANSAT35G0230 Cannabis sativa HOM05D000256 ORTHO05D000119 2.9e-07 59.3 93 32.3
Migut.N00479 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.9e-07 59.3 98 34.7
CiPaw.13G128600 Carya illinoinensis HOM05D000256 ORTHO05D000119 3.8e-07 58.9 99 32.3
SalBow2G2503 Salvia bowleyana HOM05D005430 ORTHO05D000119 3.8e-07 58.9 122 28.7
PSO724G0195 Papaver somniferum HOM05D000256 ORTHO05D000119 4.9e-07 58.5 81 37.0
SalBow4G2587 Salvia bowleyana HOM05D000256 ORTHO05D000119 4.9e-07 58.5 126 30.2
CAN.G229.22 Capsicum annuum HOM05D000256 ORTHO05D000119 8.4e-07 57.8 122 28.7
COL.COLO4_05730 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.1e-06 57.4 114 28.1
Migut.C00644 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.4e-06 57.0 137 29.9
COL.COLO4_17920 Corchorus olitorius HOM05D000256 ORTHO05D000119 1.9e-06 56.6 116 29.3
Migut.F01972 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.9e-06 56.6 139 26.6
Migut.F01940 Erythranthe guttata HOM05D000256 ORTHO05D000119 2.4e-06 56.2 134 32.1
TPR.G15971 Trifolium pratense HOM05D000256 ORTHO05D000119 3.2e-06 55.8 98 30.6
Hma1.2p1_0453F.1_g156140 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 4.2e-06 55.5 143 29.4
Carub.0007s1716 Capsella rubella HOM05D000256 ORTHO05D000119 7.1e-06 54.7 93 34.4
CAN.G222.33 Capsicum annuum HOM05D000256 ORTHO05D000119 9.2e-06 54.3 127 33.1
Haze_20148 Corylus avellana HOM05D000256 ORTHO05D000119 9.2e-06 54.3 88 34.1


User provided reference genes

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