Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 9.5e-286 986.5 628 100.0
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 9.7e-222 773.9 640 80.2
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 1.1e-204 717.2 634 72.7
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.9e-185 653.3 444 83.6
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.1e-177 627.5 634 71.0
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 1.0e-162 577.8 629 69.5
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 5.8e-150 535.4 611 69.7
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 2.4e-127 460.3 584 58.4
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 1.1e-121 441.4 633 57.0
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 1.1e-116 424.9 567 55.7
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 4.2e-116 422.9 642 47.7
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 7.9e-115 418.7 667 47.5
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.4e-114 417.9 678 45.9
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 2.8e-112 410.2 651 50.7
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 1.3e-109 401.4 654 51.5
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 4.2e-108 396.4 589 43.3
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 5.5e-108 396.0 631 47.4
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.0e-106 391.7 650 50.3
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 1.4e-106 391.3 653 50.5
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 8.8e-106 388.7 656 50.2
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 8.8e-106 388.7 571 47.3
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 1.5e-105 387.9 682 44.0
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 3.3e-105 386.7 650 42.8
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 7.4e-105 385.6 579 42.5
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.7e-104 384.4 583 48.5
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.8e-103 380.9 648 46.0
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 1.8e-103 380.9 638 44.8
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 3.1e-103 380.2 627 48.8
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 4.5e-102 376.3 609 41.5
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 3.8e-101 373.2 614 49.7
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 1.1e-100 371.7 624 47.4
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.1e-100 371.7 665 42.0
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 2.5e-100 370.5 586 48.5
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 4.2e-100 369.8 596 52.2
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 5.5e-100 369.4 647 42.0
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 5.5e-100 369.4 634 45.1
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 7.2e-100 369.0 641 45.1
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 9.4e-100 368.6 608 46.9
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 1.6e-99 367.9 643 42.1
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.0e-98 365.2 590 50.8
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 5.2e-98 362.8 588 45.4
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 6.7e-98 362.5 627 46.7
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 6.7e-98 362.5 609 48.4
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 1.5e-97 361.3 618 47.7
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 1.5e-97 361.3 651 43.6
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.5e-97 361.3 633 43.0
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.0e-97 360.9 635 44.1
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 3.7e-96 356.7 583 53.7
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 4.8e-96 356.3 646 47.1
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 1.1e-95 355.1 587 46.2
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 1.1e-95 355.1 571 48.5
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.2e-94 351.7 642 41.4
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.6e-94 351.3 588 45.7
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 3.5e-94 350.1 665 43.9
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 5.9e-94 349.4 608 48.4
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 7.7e-94 349.0 625 46.9
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 3.8e-93 346.7 632 44.9
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 5.0e-93 346.3 582 52.4
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 3.2e-92 343.6 583 51.8
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 4.2e-92 343.2 687 42.1
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.2e-91 341.7 646 43.3
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.2e-91 341.7 580 47.4
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 1.2e-91 341.7 597 41.5
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 2.7e-91 340.5 590 40.7
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.0e-90 338.6 652 41.1
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 6.8e-90 335.9 578 48.4
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.2e-89 335.1 578 52.4
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.5e-89 334.7 579 51.8
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 1.7e-88 331.3 595 46.1
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 4.8e-88 329.7 683 43.3
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 9.1e-87 325.5 633 45.5
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 2.0e-86 324.3 671 44.4
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 4.5e-86 323.2 646 45.2
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 2.2e-85 320.9 609 43.7
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 3.8e-85 320.1 520 45.0
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 6.5e-85 319.3 676 40.7
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 1.1e-84 318.5 658 40.0
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 5.5e-84 316.2 637 43.0
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.2e-83 315.1 506 47.6
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 1.2e-83 315.1 651 39.8
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 3.6e-83 313.5 646 39.2
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 1.2e-81 308.5 595 49.1
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 3.4e-81 307.0 650 44.0
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.7e-80 304.7 629 40.7
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 1.4e-79 301.6 595 43.9
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 1.8e-79 301.2 670 38.5
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.7e-78 297.4 635 45.7
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 2.8e-75 287.3 647 40.8
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 8.0e-75 285.8 537 45.4
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 1.0e-74 285.4 539 45.6
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 6.8e-74 282.7 583 38.3
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 4.4e-73 280.0 453 48.3
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 4.4e-73 280.0 646 40.7
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 2.2e-72 277.7 596 47.8
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 3.5e-70 270.4 602 44.4
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 8.6e-69 265.8 598 40.1
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 7.5e-65 252.7 569 39.9
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 6.4e-64 249.6 593 41.1
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 1.5e-60 238.4 631 40.9
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.3e-60 237.3 164 93.3
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 8.0e-59 232.6 566 36.7
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.4e-58 231.9 603 36.7
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 5.2e-58 229.9 566 37.1
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 6.8e-58 229.6 621 34.6
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 6.8e-58 229.6 427 43.1
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.9e-56 224.2 432 40.0
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.9e-55 221.5 622 33.6
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 1.1e-52 212.2 594 36.0
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 4.3e-52 210.3 573 42.4
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 1.5e-49 201.8 419 38.2
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 3.5e-46 190.7 247 50.6
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.7e-45 188.3 306 42.5
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 6.6e-37 159.8 559 34.5
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 1.4e-34 152.1 572 36.5
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 7.6e-33 146.4 365 41.6
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.6e-30 138.7 284 42.3
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 3.3e-28 131.0 196 42.3
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 4.3e-28 130.6 646 31.6
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 4.8e-27 127.1 316 38.6
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 3.4e-25 120.9 330 34.2
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 1.7e-24 118.6 224 46.0
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 4.2e-23 114.0 136 47.8
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 8.7e-21 106.3 626 31.8
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 8.7e-21 106.3 624 27.1
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 2.0e-17 95.1 171 37.4
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 1.1e-15 89.4 90 56.7
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.7e-13 80.1 98 56.1
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.1e-12 79.3 100 55.0
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.9e-12 78.6 100 56.0
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 1.6e-11 75.5 174 43.1
BcaB01g00592 Brassica carinata HOM05D057673 ORTHO05D006636 1.1e-07 62.8 91 44.0
BcaB01g00593 Brassica carinata HOM05D057673 ORTHO05D006636 1.1e-07 62.8 91 44.0
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.2e-06 59.3 553 25.3
Nitab4.5_0005621g0100 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.2e-06 59.3 122 37.7


User provided reference genes

Program Settings