Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 7.2e-193 677.2 366 100.0
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.8e-180 636.0 366 93.7
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 2.3e-162 575.9 366 86.1
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 1.9e-161 572.8 367 85.8
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 6.2e-160 567.8 367 84.2
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-157 559.7 368 83.4
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.7e-157 559.7 368 83.4
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 4.9e-157 558.1 367 83.1
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-156 556.6 367 82.8
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.4e-156 556.6 367 82.8
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 7.0e-156 554.3 367 84.2
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 4.3e-153 545.0 368 82.1
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 4.3e-153 545.0 368 82.1
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 7.3e-153 544.3 367 82.6
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 8.1e-152 540.8 367 82.0
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 3.1e-151 538.9 367 80.9
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 4.4e-150 535.0 367 80.4
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 4.4e-150 535.0 367 80.4
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.2e-149 532.7 367 81.2
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 4.1e-148 528.5 368 81.0
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 2.7e-147 525.8 367 79.8
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 4.6e-147 525.0 367 80.4
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 6.6e-146 521.2 349 81.9
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 5.6e-129 464.9 334 77.2
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 4.0e-119 432.2 371 64.4
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.8e-111 406.8 374 60.4
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 3.3e-89 332.8 373 52.8
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 6.9e-87 325.1 370 51.4
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.2e-86 324.3 368 49.7
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.5e-86 323.9 372 49.5
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 3.4e-86 322.8 369 50.7
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 3.4e-86 322.8 369 50.7
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 5.9e-86 322.0 368 51.6
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.3e-85 320.9 368 51.9
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.2e-85 320.1 369 50.7
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.8e-85 319.3 378 48.1
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 1.1e-84 317.8 369 51.5
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.9e-84 317.0 364 49.5
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.2e-84 316.2 378 48.4
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 4.2e-84 315.8 372 50.0
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.5e-84 315.5 372 50.0
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 7.2e-84 315.1 363 50.1
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 9.4e-84 314.7 370 50.3
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.4e-84 314.7 372 49.5
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 9.4e-84 314.7 372 49.5
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.4e-82 310.8 368 49.5
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.8e-82 310.5 366 48.4
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 1.8e-82 310.5 371 50.1
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.8e-82 310.5 371 50.1
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.0e-82 309.7 368 49.7
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.9e-82 309.3 371 47.7
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 3.9e-82 309.3 323 52.9
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 8.8e-82 308.1 368 49.5
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.1e-81 307.8 381 49.3
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.6e-81 306.6 379 47.8
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.3e-81 306.2 368 50.0
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 2.8e-80 303.1 373 46.6
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 1.8e-79 300.4 337 52.2
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 3.1e-79 299.7 366 48.4
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 4.1e-79 299.3 370 48.1
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.0e-78 297.0 372 47.6
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.6e-78 296.6 367 49.3
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.2e-77 293.5 372 46.8
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 2.2e-77 293.5 372 47.0
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 2.2e-77 293.5 365 48.2
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 5.0e-77 292.4 375 46.7
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.1e-76 291.2 374 45.7
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.1e-76 291.2 372 47.3
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 3.2e-76 289.7 364 47.5
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 5.5e-76 288.9 370 47.0
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 7.2e-76 288.5 377 44.8
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.2e-75 287.7 374 46.5
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 1.4e-74 284.3 325 49.2
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.8e-74 283.9 322 51.2
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 4.0e-74 282.7 357 47.9
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 5.2e-74 282.3 355 47.3
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.2e-73 281.2 366 44.0
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.5e-73 280.8 413 45.8
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.6e-73 280.0 337 47.5
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 4.4e-73 279.3 357 47.3
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 7.5e-73 278.5 366 45.6
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 1.3e-72 277.7 355 46.8
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 2.2e-72 276.9 366 44.0
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 2.8e-72 276.6 368 43.5
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 8.2e-72 275.0 351 47.0
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 3.1e-71 273.1 363 45.7
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 4.1e-71 272.7 365 45.8
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 9.1e-71 271.6 371 46.6
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.0e-69 268.1 369 45.8
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 6.5e-69 265.4 372 43.3
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 6.5e-69 265.4 371 42.6
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 8.5e-69 265.0 376 42.8
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 1.5e-68 264.2 365 43.3
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.5e-68 263.5 371 42.9
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 4.7e-67 259.2 365 43.8
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.8e-66 257.3 369 45.3
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 1.8e-66 257.3 351 45.3
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 5.2e-66 255.8 375 42.9
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 5.2e-66 255.8 302 46.7
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 6.8e-66 255.4 364 43.4
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 6.8e-66 255.4 364 43.4
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 7.5e-65 251.9 370 43.8
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 9.8e-65 251.5 371 45.0
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 1.7e-64 250.8 365 43.8
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 4.8e-64 249.2 368 42.4
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 1.4e-63 247.7 369 44.7
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 1.4e-63 247.7 347 43.5
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 2.4e-63 246.9 370 42.7
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 4.5e-62 242.7 350 43.7
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.0e-61 241.5 305 45.9
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.7e-61 240.7 369 39.8
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 2.9e-61 240.0 327 43.7
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 9.5e-60 235.0 385 40.8
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.0e-58 231.5 375 43.5
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 2.3e-58 230.3 327 42.5
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 5.2e-58 229.2 361 35.7
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 6.8e-58 228.8 372 40.6
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 9.8e-57 224.9 349 39.5
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 2.2e-56 223.8 373 39.4
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 6.3e-56 222.2 374 39.8
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 8.3e-56 221.9 344 39.5
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.8e-55 220.7 347 42.1
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 7.0e-55 218.8 324 42.6
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 9.2e-55 218.4 328 43.0
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 5.2e-50 202.6 331 39.0
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 4.9e-48 196.1 372 36.3
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 8.3e-48 195.3 270 43.3
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 3.5e-46 189.9 280 42.5
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 5.0e-45 186.0 277 40.1
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 1.5e-44 184.5 189 50.3
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 3.5e-30 136.7 129 59.7
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 4.7e-27 126.3 129 53.5
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 3.1e-26 123.6 383 33.2
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.2e-24 117.5 136 42.6
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.2e-23 113.6 138 39.9
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.0e-21 108.6 365 29.9
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.3e-21 107.5 130 41.5
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 3.0e-21 107.1 125 42.4
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.1e-19 100.9 374 26.5
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 4.4e-17 93.2 380 26.1
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 5.8e-17 92.8 157 39.5
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 2.9e-16 90.5 375 25.6
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 3.2e-15 87.0 100 42.0
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.6e-14 83.2 198 30.3
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 6.0e-14 82.8 262 27.9
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.5e-12 78.2 243 25.9
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 7.3e-12 75.9 127 33.9
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 3.1e-10 70.5 96 45.8
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.1e-06 57.8 83 39.8
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 2.1e-06 57.8 83 39.8


User provided reference genes

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