Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 3.2e-133 478.4 241 100.0
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 4.7e-124 448.0 238 93.3
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.1e-117 426.8 239 90.0
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.5e-114 416.4 238 88.2
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 3.1e-112 408.7 240 87.1
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 9.2e-112 407.1 240 87.5
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 9.2e-112 407.1 239 87.4
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 1.6e-111 406.4 240 87.1
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 4.5e-111 404.8 237 88.2
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 1.3e-110 403.3 239 87.0
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.7e-110 402.9 239 87.0
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 5.9e-103 377.9 242 80.6
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 9.5e-101 370.5 221 86.4
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.2e-100 370.2 192 94.3
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 3.6e-100 368.6 247 75.3
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.5e-98 363.2 201 88.6
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 3.2e-96 355.5 212 86.3
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.1e-84 316.2 205 79.0
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 9.9e-82 307.4 242 63.6
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.7e-81 306.6 242 62.4
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 2.3e-78 296.2 238 63.0
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 2.3e-78 296.2 239 64.4
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 8.9e-75 284.3 243 60.5
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 8.9e-75 284.3 242 60.3
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 1.5e-74 283.5 239 59.4
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 2.9e-73 279.3 241 61.4
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 1.4e-72 276.9 237 61.2
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 4.2e-72 275.4 241 61.0
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.4e-72 275.0 238 60.5
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 7.1e-72 274.6 240 59.2
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.1e-71 273.1 238 60.5
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.6e-71 271.9 242 58.7
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.0e-70 270.8 238 60.9
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 1.7e-70 270.0 240 59.6
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 3.0e-70 269.2 238 58.0
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.9e-70 268.9 242 58.3
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 8.7e-70 267.7 242 57.4
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.1e-69 267.3 242 57.9
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 3.3e-69 265.8 242 57.4
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 5.6e-69 265.0 242 57.9
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 5.6e-69 265.0 245 57.1
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 5.6e-69 265.0 237 58.2
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 7.3e-69 264.6 242 58.3
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 9.6e-69 264.2 240 57.5
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.6e-68 263.5 250 56.8
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 8.1e-68 261.2 244 58.2
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 1.8e-67 260.0 239 56.9
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 1.8e-67 260.0 239 56.5
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 3.1e-67 259.2 225 58.7
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 3.1e-67 259.2 244 55.7
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 2.6e-66 256.1 244 55.7
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.6e-66 256.1 225 57.8
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 3.4e-66 255.8 301 47.5
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 4.4e-66 255.4 242 56.2
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.8e-66 255.0 250 55.2
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 7.6e-66 254.6 237 57.4
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 9.9e-66 254.2 241 55.6
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 9.9e-66 254.2 193 66.3
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.3e-65 253.8 240 56.7
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.7e-65 253.4 240 57.1
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 2.2e-65 253.1 235 57.0
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 2.9e-65 252.7 241 56.0
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 3.8e-65 252.3 241 54.8
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 6.4e-65 251.5 242 57.0
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.1e-64 250.8 241 54.8
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 1.4e-64 250.4 239 56.5
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.9e-64 250.0 241 53.9
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 1.9e-64 250.0 243 56.0
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 4.2e-64 248.8 239 55.6
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 4.2e-64 248.8 244 55.3
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 5.4e-64 248.4 244 55.3
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 9.3e-64 247.7 255 53.3
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 2.1e-63 246.5 242 53.3
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 3.5e-63 245.7 240 55.4
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 6.0e-63 245.0 245 53.9
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 6.0e-63 245.0 189 65.6
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 7.9e-63 244.6 235 55.3
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.0e-62 244.2 240 55.4
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.0e-62 244.2 240 54.6
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.3e-62 243.8 242 56.2
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.7e-62 243.4 235 54.9
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.7e-62 243.4 241 53.9
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 3.9e-62 242.3 242 54.1
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 5.1e-62 241.9 238 55.9
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 6.6e-62 241.5 244 52.5
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 8.7e-62 241.1 240 53.3
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.9e-61 240.0 243 54.3
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 4.3e-61 238.8 241 53.1
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 4.3e-61 238.8 241 52.3
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 9.6e-61 237.7 243 53.9
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 2.1e-60 236.5 242 54.1
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 2.1e-60 236.5 211 56.9
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.2e-60 235.0 210 57.6
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.2e-60 235.0 210 57.6
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 6.2e-60 235.0 168 66.1
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 5.3e-59 231.9 185 59.5
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 4.5e-58 228.8 289 47.1
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 2.9e-57 226.1 201 59.2
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.1e-56 221.5 207 56.5
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 7.1e-56 221.5 331 41.1
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.2e-55 220.7 240 51.2
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.1e-55 219.9 165 64.2
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 6.7e-54 214.9 178 61.8
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.5e-53 213.8 195 54.9
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 9.6e-53 211.1 191 56.5
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 2.8e-52 209.5 192 54.2
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 3.1e-51 206.1 224 50.9
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 9.0e-51 204.5 244 48.0
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 4.5e-50 202.2 165 60.6
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.0e-49 201.1 164 58.5
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.2e-48 196.1 178 62.4
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 5.7e-37 158.7 172 48.8
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.3e-36 157.5 174 52.9
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.6e-31 140.6 221 38.5
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 4.6e-31 139.0 100 66.0
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.0e-30 137.9 103 64.1
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.5e-29 134.0 178 44.9
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 3.1e-27 126.3 102 57.8
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.4e-24 117.5 132 53.8
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 6.1e-23 112.1 197 34.5
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.8e-22 110.5 164 37.8
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 6.7e-22 108.6 190 38.9
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 2.8e-20 103.2 106 53.8
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.1e-19 99.8 48 89.6
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 4.2e-16 89.4 75 58.7
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 8.0e-15 85.1 190 33.7
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 2.3e-14 83.6 115 43.5
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 4.1e-11 72.8 57 64.9
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.7e-09 67.4 57 57.9
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.5e-08 64.3 225 27.1
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 1.8e-06 57.4 102 40.2
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 3.0e-06 56.6 122 29.5


User provided reference genes

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