Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 1.6e-228 795.8 422 100.0
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.2e-204 716.5 423 90.8
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 4.7e-204 714.5 422 89.8
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 4.3e-197 691.4 430 87.4
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 4.7e-188 661.4 426 82.2
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 4.9e-169 598.2 422 76.1
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 6.4e-169 597.8 423 77.3
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 6.4e-169 597.8 421 76.5
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 7.1e-168 594.3 421 75.8
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 1.9e-165 586.3 428 74.5
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 2.8e-164 582.4 430 73.7
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 4.7e-164 581.6 428 74.1
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 4.2e-152 542.0 351 83.2
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 5.6e-149 531.6 409 69.4
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 8.5e-121 438.0 427 55.7
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 1.0e-118 431.0 426 55.6
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.7e-117 425.2 424 55.0
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 1.4e-115 420.6 424 54.0
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.9e-113 412.9 424 53.5
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 9.7e-109 397.9 420 52.4
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 2.0e-106 390.2 418 52.4
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 2.2e-105 386.7 424 53.1
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 6.1e-103 378.6 385 53.2
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 4.4e-101 372.5 423 49.2
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 4.8e-100 369.0 418 49.8
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 6.3e-100 368.6 409 49.4
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 1.1e-99 367.9 418 48.3
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 7.7e-98 361.7 418 51.0
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 1.1e-96 357.8 417 48.4
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 2.7e-95 353.2 412 50.2
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 2.7e-95 353.2 412 50.2
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 2.3e-94 350.1 411 47.2
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 5.2e-94 349.0 414 46.4
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 1.8e-91 340.5 372 51.6
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 5.4e-91 339.0 558 38.9
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 1.2e-90 337.8 420 47.4
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 1.0e-89 334.7 418 43.8
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 1.3e-89 334.3 406 48.0
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 2.9e-89 333.2 541 39.4
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 5.5e-88 328.9 448 44.0
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 7.2e-88 328.6 416 45.7
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 1.4e-86 324.3 414 44.0
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 4.0e-86 322.8 528 40.0
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 1.5e-85 320.9 416 45.0
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 5.7e-85 318.9 403 45.7
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 1.3e-84 317.8 372 47.3
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 1.1e-83 314.7 411 44.0
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 4.1e-83 312.8 448 43.1
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 5.4e-83 312.4 419 44.2
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 1.0e-81 308.1 418 45.0
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.0e-81 308.1 417 43.6
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 1.3e-81 307.8 355 48.7
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 1.3e-81 307.8 408 45.1
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 1.3e-81 307.8 415 43.9
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 7.3e-80 302.0 377 47.2
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 2.8e-79 300.1 407 45.0
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 2.8e-79 300.1 403 43.4
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 8.0e-79 298.5 403 43.4
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 1.2e-77 294.7 409 42.3
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 1.7e-76 290.8 359 46.2
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 6.4e-76 288.9 437 39.1
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 8.3e-76 288.5 437 39.1
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.9e-75 287.3 417 41.5
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 4.1e-75 286.2 395 42.8
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 4.6e-74 282.7 409 40.6
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 6.0e-74 282.3 405 42.7
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 7.8e-74 282.0 425 40.2
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 6.6e-73 278.9 372 45.4
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 1.9e-72 277.3 379 43.3
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 2.8e-71 273.5 396 41.7
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 4.7e-71 272.7 387 42.4
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 2.0e-69 267.3 404 41.1
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 5.8e-69 265.8 408 40.9
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 6.4e-68 262.3 411 39.4
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 7.0e-67 258.8 366 42.3
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 1.2e-66 258.1 560 35.2
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 1.0e-65 255.0 385 41.0
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 2.3e-65 253.8 413 40.0
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 2.3e-65 253.8 411 38.9
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 5.1e-65 252.7 360 43.9
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.5e-64 251.1 265 50.9
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 2.5e-64 250.4 413 39.2
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 3.3e-64 250.0 280 51.1
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.1e-62 245.0 265 50.2
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 1.9e-59 234.2 400 37.8
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 4.1e-59 233.0 351 40.7
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 6.0e-58 229.2 362 39.8
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 2.3e-57 227.3 385 39.0
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 5.6e-56 222.6 386 38.9
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 2.1e-50 204.1 403 36.0
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 2.7e-50 203.8 243 49.4
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 3.0e-49 200.3 295 45.1
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 1.2e-47 194.9 382 37.7
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 2.8e-47 193.7 170 57.1
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 2.6e-45 187.2 299 42.8
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.4e-45 186.8 299 42.8
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 7.6e-45 185.7 257 45.1
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 1.3e-44 184.9 255 40.0
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.2e-44 184.1 299 41.8
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 4.2e-43 179.9 255 44.7
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 5.4e-43 179.5 415 31.6
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 3.3e-40 170.2 224 43.3
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 1.6e-39 167.9 288 36.5
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 3.8e-36 156.8 148 56.1
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 1.4e-35 154.8 252 39.7
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 3.2e-35 153.7 252 39.3
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 5.4e-35 152.9 143 51.7
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.9e-24 117.9 264 37.5
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 1.4e-22 111.7 127 51.2
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 3.1e-22 110.5 411 26.0
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 8.4e-20 102.4 143 40.6
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 8.4e-20 102.4 262 32.4
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 3.2e-19 100.5 131 42.0
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 4.6e-18 96.7 85 55.3
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 6.0e-18 96.3 118 45.8
BolC5t33834H Brassica oleracea HOM05D006138 ORTHO05D032537 1.5e-16 91.7 74 63.5
C02p59990 Brassica napus HOM05D006138 ORTHO05D032537 7.4e-16 89.4 78 60.3
BcaC09g47899 Brassica carinata HOM05D006138 ORTHO05D032537 1.1e-14 85.5 74 59.5
Pp3c4_4010 Physcomitrium patens HOM05D058747 ORTHO05D007778 5.3e-14 83.2 277 26.0
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 5.3e-14 83.2 122 37.7
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 5.3e-14 83.2 122 37.7
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.0e-13 81.3 129 41.9
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 8.5e-12 75.9 435 23.9
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 1.4e-11 75.1 105 42.9
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 2.1e-10 71.2 95 51.6
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 2.7e-10 70.9 95 52.6
Aa31LG8G10510 Aethionema arabicum HOM05D006138 ORTHO05D007778 2.3e-09 67.8 51 66.7
C04p64520 Brassica napus HOM05D009099 ORTHO05D014276 2.3e-09 67.8 89 48.3
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 8.8e-09 65.9 95 48.4
BcaC02g07692 Brassica carinata HOM05D009099 ORTHO05D014276 9.7e-08 62.4 59 57.6
RcHm_v2.0_Chr4g0419401 Rosa chinensis HOM05D006138 ORTHO05D007778 2.2e-07 61.2 92 43.5
Ciclev10006864m.g Citrus clementina HOM05D006138 ORTHO05D007778 1.4e-06 58.5 65 46.2
SHI01022 Sapria himalayana HOM05D006138 ORTHO05D007778 1.8e-06 58.2 67 47.8


User provided reference genes

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