Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G37460 Arabidopsis lyrata HOM05D003117 ORTHO05D003612 5.1e-145 517.7 258 100.0
Carub.0003s2319 Capsella rubella HOM05D003117 ORTHO05D003612 5.6e-67 258.5 227 63.9
Carub.0210s0001 Capsella rubella HOM05D003117 ORTHO05D003612 1.6e-66 256.9 227 63.9
Thhalv10024477m.g Eutrema salsugineum HOM05D003117 ORTHO05D003612 2.1e-58 229.9 230 58.7
Aa31LG9G2760 Aethionema arabicum HOM05D003117 ORTHO05D003612 5.3e-57 225.3 229 55.0
Sp7g12660 Schrenkiella parvula HOM05D003117 ORTHO05D003612 5.3e-57 225.3 238 55.5
BcaB04g18243 Brassica carinata HOM05D003117 ORTHO05D003612 2.6e-56 223.0 230 55.7
CARHR220780 Cardamine hirsuta HOM05D003117 ORTHO05D003612 3.4e-56 222.6 229 55.0
THA.LOC104822254 Tarenaya hassleriana HOM05D003117 ORTHO05D003612 5.8e-56 221.9 229 55.5
BcaC08g44280 Brassica carinata HOM05D003117 ORTHO05D003612 7.6e-56 221.5 216 57.4
BraA05t20573Z Brassica rapa HOM05D003117 ORTHO05D003612 1.0e-55 221.1 216 57.4
Dinv44609 Davidia involucrata HOM05D003117 ORTHO05D003612 6.5e-55 218.4 193 60.1
C06p16990 Brassica napus HOM05D003117 ORTHO05D003612 1.9e-54 216.9 217 57.1
A05p16700 Brassica napus HOM05D003117 ORTHO05D003612 2.5e-54 216.5 217 57.1
Carub.0007s2764 Capsella rubella HOM05D003117 ORTHO05D003612 2.5e-54 216.5 237 53.6
BolC6t36899H Brassica oleracea HOM05D003117 ORTHO05D003612 5.5e-54 215.3 217 56.7
AL7G41570 Arabidopsis lyrata HOM05D003117 ORTHO05D003612 1.6e-53 213.8 229 53.7
AT4G14570 Arabidopsis thaliana HOM05D003117 ORTHO05D003612 1.6e-53 213.8 237 52.7
A08p11210 Brassica napus HOM05D003117 ORTHO05D003612 2.3e-52 209.9 231 52.4
BcaC07g37831 Brassica carinata HOM05D003117 ORTHO05D003612 3.0e-52 209.5 230 52.2
Lj6C653G15 Lonicera japonica HOM05D003117 ORTHO05D003612 3.9e-52 209.1 218 51.8
BraA08t33117Z Brassica rapa HOM05D003117 ORTHO05D003612 8.7e-52 208.0 231 51.5
CSS0025557 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 1.1e-51 207.6 218 52.3
CSS0037722 Camellia sinensis var. sinensis HOM05D003117 ORTHO05D003612 1.1e-51 207.6 218 52.3
Rhsim04G0195100 Rhododendron simsii HOM05D003117 ORTHO05D003612 3.3e-51 206.1 218 51.8
Oeu064216.1 Olea europaea HOM05D003117 ORTHO05D003612 5.7e-51 205.3 219 53.9
BolC8t48215H Brassica oleracea HOM05D003117 ORTHO05D003612 7.4e-51 204.9 231 51.9
BcaC09g50117 Brassica carinata HOM05D003117 ORTHO05D003612 9.6e-51 204.5 216 55.6
GSVIVG01018091001 Vitis vinifera HOM05D003117 ORTHO05D003612 1.3e-50 204.1 217 51.6
BraA01t02227Z Brassica rapa HOM05D003117 ORTHO05D003612 2.1e-50 203.4 217 56.2
BcaNung00363 Brassica carinata HOM05D003117 ORTHO05D003612 2.8e-50 203.0 216 55.1
Sopen03g001380 Solanum pennellii HOM05D003117 ORTHO05D003612 6.3e-50 201.8 218 50.5
CiPaw.01G192600 Carya illinoinensis HOM05D003117 ORTHO05D003612 8.2e-50 201.4 218 51.4
A01p23180 Brassica napus HOM05D003117 ORTHO05D003612 1.1e-49 201.1 217 55.8
Solyc03g005340.4 Solanum lycopersicum HOM05D003117 ORTHO05D003612 1.1e-49 201.1 218 50.5
PGSC0003DMG400013444 Solanum tuberosum HOM05D003117 ORTHO05D003612 1.4e-49 200.7 219 51.1
C01p28830 Brassica napus HOM05D003117 ORTHO05D003612 2.4e-49 199.9 217 55.3
BolC1t02811H Brassica oleracea HOM05D003117 ORTHO05D003612 2.4e-49 199.9 217 55.3
CAN.G638.79 Capsicum annuum HOM05D003117 ORTHO05D003612 2.4e-49 199.9 218 50.5
Actinidia04495 Actinidia chinensis HOM05D003117 ORTHO05D003612 5.3e-49 198.7 219 51.6
Peaxi162Scf00019g03119 Petunia axillaris HOM05D003117 ORTHO05D003612 5.3e-49 198.7 247 47.0
Nn1g02533 Nelumbo nucifera HOM05D003117 ORTHO05D003612 6.9e-49 198.4 220 50.9
Duzib151G0985 Durio zibethinus HOM05D003117 ORTHO05D003612 9.0e-49 198.0 215 49.8
Thecc.04G243500 Theobroma cacao HOM05D003117 ORTHO05D003612 9.0e-49 198.0 216 49.1
Manes.03G170200 Manihot esculenta HOM05D003117 ORTHO05D003612 2.0e-48 196.8 218 50.5
CAN.G749.36 Capsicum annuum HOM05D003117 ORTHO05D003612 2.6e-48 196.4 218 49.5
Migut.G00413 Erythranthe guttata HOM05D003117 ORTHO05D003612 2.6e-48 196.4 218 50.0
ECA233G5632 Erigeron canadensis HOM05D003117 ORTHO05D003612 3.4e-48 196.1 217 49.3
QL06p014983 Quercus lobata HOM05D003117 ORTHO05D003612 3.4e-48 196.1 214 51.4
Nitab4.5_0001856g0040 Nicotiana tabacum HOM05D003117 ORTHO05D003612 4.5e-48 195.7 218 50.9
AUR62010057 Chenopodium quinoa HOM05D003117 ORTHO05D003612 5.9e-48 195.3 214 50.0
TAR633G0296 Trochodendron aralioides HOM05D003117 ORTHO05D003612 5.9e-48 195.3 219 50.7
Potri.008G160400 Populus trichocarpa HOM05D003117 ORTHO05D003612 1.0e-47 194.5 218 49.5
SalBow2G0949 Salvia bowleyana HOM05D003117 ORTHO05D003612 1.0e-47 194.5 218 50.0
Cfa008401 Carpinus fangiana HOM05D003117 ORTHO05D003612 1.3e-47 194.1 218 50.0
Cc03_g04630 Coffea canephora HOM05D003117 ORTHO05D003612 1.3e-47 194.1 216 51.4
Aqoxy5G00365 Aquilegia oxysepala HOM05D003117 ORTHO05D003612 1.7e-47 193.7 219 50.7
DCAR_027265 Daucus carota HOM05D003117 ORTHO05D003612 2.2e-47 193.4 213 49.3
PSO832G4175 Papaver somniferum HOM05D003117 ORTHO05D003612 2.9e-47 193.0 214 51.4
EL10Ac9g21398 Beta vulgaris HOM05D003117 ORTHO05D003612 3.8e-47 192.6 218 50.5
Haze_11267 Corylus avellana HOM05D003117 ORTHO05D003612 3.8e-47 192.6 218 49.5
FvH4_4g02060 Fragaria vesca HOM05D003117 ORTHO05D003612 3.8e-47 192.6 217 49.8
VMungo0720G0420 Vigna mungo HOM05D003117 ORTHO05D003612 3.8e-47 192.6 218 49.5
Nitab4.5_0007585g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 5.0e-47 192.2 218 50.0
Sopen09g032010 Solanum pennellii HOM05D003117 ORTHO05D003612 5.0e-47 192.2 218 48.2
PSO210G5858 Papaver somniferum HOM05D003117 ORTHO05D003612 6.5e-47 191.8 214 51.9
Hund06426 Selenicereus undatus HOM05D003117 ORTHO05D003612 6.5e-47 191.8 234 48.3
Ciclev10004325m.g Citrus clementina HOM05D003117 ORTHO05D003612 8.4e-47 191.4 217 48.4
RcHm_v2.0_Chr4g0389431 Rosa chinensis HOM05D003117 ORTHO05D003612 8.4e-47 191.4 216 50.5
CANSAT78G2141 Cannabis sativa HOM05D003117 ORTHO05D003612 1.1e-46 191.0 214 49.1
Lj6C653G14 Lonicera japonica HOM05D003117 ORTHO05D003612 1.4e-46 190.7 166 63.9
QL06p015015 Quercus lobata HOM05D003117 ORTHO05D003612 1.4e-46 190.7 224 49.1
Solyc09g083130.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 1.4e-46 190.7 218 47.7
COL.COLO4_15764 Corchorus olitorius HOM05D003117 ORTHO05D003612 1.9e-46 190.3 216 48.6
unitig_748.g8319 Utricularia gibba HOM05D003117 ORTHO05D003612 1.9e-46 190.3 218 49.1
HanXRQChr12g0363751 Helianthus annuus HOM05D003117 ORTHO05D003612 2.5e-46 189.9 217 48.8
Phvul.007G279900 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 2.5e-46 189.9 218 48.2
Sed0002710 Sechium edule HOM05D003117 ORTHO05D003612 3.2e-46 189.5 215 48.8
arahy.Tifrunner.gnm1.ann1.7J7E83 Arachis hypogaea HOM05D003117 ORTHO05D003612 4.2e-46 189.1 220 47.3
arahy.Tifrunner.gnm1.ann1.EG5LEH Arachis hypogaea HOM05D003117 ORTHO05D003612 4.2e-46 189.1 220 47.3
Gorai.006G245500 Gossypium raimondii HOM05D003117 ORTHO05D003612 4.2e-46 189.1 216 49.5
AUR62027936 Chenopodium quinoa HOM05D003117 ORTHO05D003612 5.5e-46 188.7 218 47.7
Gohir.D09G224000 Gossypium hirsutum HOM05D003117 ORTHO05D003612 5.5e-46 188.7 216 48.6
Lj6g0000554 Lotus japonicus HOM05D003117 ORTHO05D003612 7.2e-46 188.3 218 47.7
Glyma.10G001100 Glycine max HOM05D003117 ORTHO05D003612 9.3e-46 188.0 218 48.6
Gohir.A09G221900 Gossypium hirsutum HOM05D003117 ORTHO05D003612 1.2e-45 187.6 216 48.1
Sabra08G0122200 Salix brachista HOM05D003117 ORTHO05D003612 1.2e-45 187.6 214 48.1
Sabra08G0122300 Salix brachista HOM05D003117 ORTHO05D003612 1.2e-45 187.6 223 47.1
Sc25g0004180 Simmondsia chinensis HOM05D003117 ORTHO05D003612 1.2e-45 187.6 217 50.7
FAN12G0712 Fragaria x ananassa HOM05D003117 ORTHO05D003612 1.6e-45 187.2 217 48.8
FAN12G3229 Fragaria x ananassa HOM05D003117 ORTHO05D003612 1.6e-45 187.2 217 48.8
MD13G1203600 Malus domestica HOM05D003117 ORTHO05D003612 1.6e-45 187.2 218 49.1
Eucgr.H00222 Eucalyptus grandis HOM05D003117 ORTHO05D003612 2.1e-45 186.8 217 48.8
Prupe.1G026800 Prunus persica HOM05D003117 ORTHO05D003612 2.7e-45 186.4 218 48.2
RcHm_v2.0_Chr4g0389461 Rosa chinensis HOM05D003117 ORTHO05D003612 2.7e-45 186.4 218 48.2
Lalb_Chr01g0020821 Lupinus albus HOM05D003117 ORTHO05D003612 3.5e-45 186.0 218 47.2
Ah.01g008550 Amaranthus hybridus HOM05D003117 ORTHO05D003612 4.6e-45 185.7 216 48.1
ClCG06G006600 Citrullus lanatus HOM05D003117 ORTHO05D003612 7.9e-45 184.9 218 48.2
CsaV3_2G013240 Cucumis sativus L. HOM05D003117 ORTHO05D003612 1.3e-44 184.1 218 48.2
DCAR_030706 Daucus carota HOM05D003117 ORTHO05D003612 1.3e-44 184.1 222 46.8
Nitab4.5_0007710g0050 Nicotiana tabacum HOM05D003117 ORTHO05D003612 1.3e-44 184.1 217 50.2
Ca_12210_v3 Cicer arietinum L. HOM05D003117 ORTHO05D003612 1.8e-44 183.7 211 47.9
TPR.G22486 Trifolium pratense HOM05D003117 ORTHO05D003612 2.3e-44 183.3 218 46.8
TWI09G1508 Tripterygium wilfordii HOM05D003117 ORTHO05D003612 2.3e-44 183.3 216 47.7
MD16G1205300 Malus domestica HOM05D003117 ORTHO05D003612 3.9e-44 182.6 218 48.2
MELO3C014268.2 Cucumis melo HOM05D003117 ORTHO05D003612 5.1e-44 182.2 218 46.8
Medtr5g042400 Medicago truncatula HOM05D003117 ORTHO05D003612 6.7e-44 181.8 218 46.3
MSTRG.9934 Avicennia marina HOM05D003117 ORTHO05D003612 1.1e-43 181.0 218 47.2
Medtr1g040725 Medicago truncatula HOM05D003117 ORTHO05D003612 1.1e-43 181.0 218 45.9
MD16G1205600 Malus domestica HOM05D003117 ORTHO05D003612 1.9e-43 180.3 218 47.7
Psat0s4097g0040 Pisum sativum HOM05D003117 ORTHO05D003612 1.9e-43 180.3 218 45.9
MBI11_g15904_MAGBIO Magnolia biondii HOM05D003117 ORTHO05D003612 2.5e-43 179.9 226 46.0
Nitab4.5_0013033g0020 Nicotiana tabacum HOM05D003117 ORTHO05D003612 2.5e-43 179.9 235 46.8
Solyc09g083120.3 Solanum lycopersicum HOM05D003117 ORTHO05D003612 3.3e-43 179.5 219 46.6
CAN.G749.34 Capsicum annuum HOM05D003117 ORTHO05D003612 4.3e-43 179.1 218 47.7
Sopen09g032000 Solanum pennellii HOM05D003117 ORTHO05D003612 5.7e-43 178.7 218 45.4
HPP92_024855 Vanilla planifolia HOM05D003117 ORTHO05D003612 5.7e-43 178.7 227 43.6
Peaxi162Scf00788g00312 Petunia axillaris HOM05D003117 ORTHO05D003612 2.2e-42 176.8 218 45.9
ATR0665G110 Amborella trichopoda HOM05D003117 ORTHO05D003612 3.7e-42 176.0 221 47.1
PSO210G4228 Papaver somniferum HOM05D003117 ORTHO05D003612 3.7e-42 176.0 214 47.2
PSO210G1820 Papaver somniferum HOM05D003117 ORTHO05D003612 4.8e-42 175.6 206 49.0
vmacro08397 Vaccinium macrocarpon HOM05D003117 ORTHO05D003612 4.8e-42 175.6 137 67.2
Medtr5g042410 Medicago truncatula HOM05D003117 ORTHO05D003612 6.3e-42 175.3 218 45.0
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 6.3e-42 175.3 214 48.6
Peaxi162Scf00578g00525 Petunia axillaris HOM05D003117 ORTHO05D003612 6.3e-42 175.3 209 49.3
PSO210G4691 Papaver somniferum HOM05D003117 ORTHO05D003612 8.2e-42 174.9 214 47.2
SGA_v2.0_scaffold88G27334 Striga asiatica HOM05D003117 ORTHO05D003612 1.1e-41 174.5 243 44.0
Psat6g136360 Pisum sativum HOM05D003117 ORTHO05D003612 1.8e-41 173.7 261 40.6
AUR62007946 Chenopodium quinoa HOM05D003117 ORTHO05D003612 3.1e-41 172.9 217 43.8
Lsat_1_v5_gn_5_67900 Lactuca sativa HOM05D003117 ORTHO05D003612 4.1e-41 172.6 217 45.2
Eucgr.H00221 Eucalyptus grandis HOM05D003117 ORTHO05D003612 5.3e-41 172.2 217 45.6
MD16G1205200 Malus domestica HOM05D003117 ORTHO05D003612 5.3e-41 172.2 218 46.3
PGR142G2368 Punica granatum HOM05D003117 ORTHO05D003612 5.3e-41 172.2 216 46.3
AUR62003125 Chenopodium quinoa HOM05D003117 ORTHO05D003612 9.0e-41 171.4 217 43.3
Psat6g102200 Pisum sativum HOM05D003117 ORTHO05D003612 1.5e-40 170.6 217 45.6
AUR62013049 Chenopodium quinoa HOM05D003117 ORTHO05D003612 3.4e-40 169.5 123 69.9
MD16G1205500 Malus domestica HOM05D003117 ORTHO05D003612 3.4e-40 169.5 221 46.2
PGR142G3261 Punica granatum HOM05D003117 ORTHO05D003612 4.5e-40 169.1 216 46.8
Zm00001eb048000 Zea mays HOM05D003117 ORTHO05D003612 7.7e-40 168.3 214 45.3
Glyma.10G001000 Glycine max HOM05D003117 ORTHO05D003612 2.2e-39 166.8 218 44.0
Lalb_Chr03g0037941 Lupinus albus HOM05D003117 ORTHO05D003612 5.0e-39 165.6 218 43.6
Manes.15G035400 Manihot esculenta HOM05D003117 ORTHO05D003612 1.1e-38 164.5 244 41.0
CDE06G0682 Ceratophyllum demersum HOM05D003117 ORTHO05D003612 1.4e-38 164.1 222 43.7
VMungo0720G0109 Vigna mungo HOM05D003117 ORTHO05D003612 1.4e-38 164.1 218 43.6
Phvul.007G280000 Phaseolus vulgaris HOM05D003117 ORTHO05D003612 2.5e-38 163.3 218 43.1
Zm00001eb223050 Zea mays HOM05D003117 ORTHO05D003612 3.2e-38 162.9 220 42.3
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 2.3e-36 156.8 118 67.8
Lsat_1_v5_gn_5_67880 Lactuca sativa HOM05D003117 ORTHO05D003612 7.4e-35 151.8 215 41.9
Os10g0415800 Oryza sativa ssp. japonica HOM05D003117 ORTHO05D003612 1.3e-34 151.0 135 57.8
Pp3c2_30720 Physcomitrium patens HOM05D003117 ORTHO05D003612 1.8e-33 147.1 231 42.4
Pp3c7_25140 Physcomitrium patens HOM05D003117 ORTHO05D003612 6.9e-33 145.2 231 40.3
Lj6g0018324 Lotus japonicus HOM05D003117 ORTHO05D003612 2.6e-32 143.3 126 57.9
SHI00568 Sapria himalayana HOM05D003117 ORTHO05D003612 1.7e-31 140.6 164 47.6
arahy.Tifrunner.gnm1.ann1.6YLS1K Arachis hypogaea HOM05D003117 ORTHO05D003612 1.4e-30 137.5 218 38.5
Pp3c12_21080 Physcomitrium patens HOM05D003117 ORTHO05D003612 2.5e-30 136.7 229 35.4
SalBow2G2395 Salvia bowleyana HOM05D003117 ORTHO05D003612 9.4e-30 134.8 191 44.5
Mapoly0111s0036 Marchantia polymorpha HOM05D003117 ORTHO05D003612 2.1e-29 133.7 231 37.2
Nitab4.5_0001856g0030 Nicotiana tabacum HOM05D003117 ORTHO05D003612 3.6e-29 132.9 166 50.6
SMO347G0435 Selaginella moellendorffii HOM05D003117 ORTHO05D003612 4.7e-29 132.5 218 38.5
AagrBONN_evm.TU.Sc2ySwM_368.3180 Anthoceros agrestis HOM05D003117 ORTHO05D003612 6.5e-23 112.1 172 41.9
FAN12G3237 Fragaria x ananassa HOM05D003117 ORTHO05D003612 4.2e-22 109.4 165 41.8
HPP92_026601 Vanilla planifolia HOM05D003117 ORTHO05D003612 7.2e-22 108.6 163 40.5
CBR_g47 Chara braunii HOM05D003117 ORTHO05D003612 9.4e-22 108.2 140 44.3
Psat4g201800 Pisum sativum HOM05D003117 ORTHO05D003612 2.7e-21 106.7 90 61.1
Nitab4.5_0004068g0010 Nicotiana tabacum HOM05D003117 ORTHO05D003612 1.5e-19 100.9 114 50.0
Lalb_Chr03g0037641 Lupinus albus HOM05D003117 ORTHO05D003612 3.3e-19 99.8 157 37.6
TPR.G22476 Trifolium pratense HOM05D003117 ORTHO05D003612 2.2e-18 97.1 157 36.3
Cre05.g241650 Chlamydomonas reinhardtii HOM05D003117 ORTHO05D003612 1.8e-17 94.0 109 44.0
arahy.Tifrunner.gnm1.ann1.4ME45Z Arachis hypogaea HOM05D003117 ORTHO05D003612 3.1e-17 93.2 158 36.1
MCO08G067 Micromonas commoda HOM05D003117 ORTHO05D003612 1.3e-15 87.8 100 42.0
Lalb_Chr03g0037631 Lupinus albus HOM05D003117 ORTHO05D003612 2.2e-15 87.0 67 64.2
TPR.G28258 Trifolium pratense HOM05D003117 ORTHO05D003612 3.8e-15 86.3 68 63.2
TPR.G39892 Trifolium pratense HOM05D003117 ORTHO05D003612 8.5e-15 85.1 68 63.2
FAN22G1146 Fragaria x ananassa HOM05D003117 ORTHO05D003612 1.4e-12 77.8 58 63.8
FAN17G0901 Fragaria x ananassa HOM05D003117 ORTHO05D003612 1.2e-11 74.7 58 60.3
PRCOL_00005468 Prasinoderma coloniale HOM05D003117 ORTHO05D003612 2.0e-11 73.9 96 39.6
Actinidia27515 Actinidia chinensis HOM05D003117 ORTHO05D003612 5.9e-08 62.4 37 73.0
Cfa023991 Carpinus fangiana HOM05D003117 ORTHO05D026663 7.7e-08 62.0 125 34.4
FvH4_4g02161 Fragaria vesca HOM05D003117 ORTHO05D003612 2.2e-07 60.5 205 30.7
Prupe.8G050400 Prunus persica HOM05D000001 ORTHO05D009373 2.5e-06 57.0 37 64.9
CAN.G521.7 Capsicum annuum HOM05D002023 ORTHO05D002049 3.2e-06 56.6 56 51.8
Nitab4.5_0001497g0060 Nicotiana tabacum HOM05D003117 ORTHO05D003612 4.2e-06 56.2 39 66.7
CiPaw.15G063700 Carya illinoinensis HOM05D003475 ORTHO05D004155 7.2e-06 55.5 100 36.0


User provided reference genes

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