Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G36260 Arabidopsis lyrata HOM05D007783 ORTHO05D009740 9.8e-42 174.1 182 100.0
Carub.0003s2223 Capsella rubella HOM05D007783 ORTHO05D009740 3.1e-27 125.9 90 90.0
CARHR097930 Cardamine hirsuta HOM05D007783 ORTHO05D009740 1.7e-22 110.2 80 86.2
AT3G22070 Arabidopsis thaliana HOM05D007783 ORTHO05D009740 3.6e-20 102.4 187 79.7
C05p41370 Brassica napus HOM05D007783 ORTHO05D009740 3.6e-20 102.4 100 67.0
BolC1t04180H Brassica oleracea HOM05D007783 ORTHO05D009740 2.4e-19 99.8 88 79.5
A01p33040 Brassica napus HOM05D007783 ORTHO05D009740 4.5e-18 95.5 182 69.8
C01p42180 Brassica napus HOM05D007783 ORTHO05D009740 4.5e-18 95.5 84 79.8
BraA01t03426Z Brassica rapa HOM05D007783 ORTHO05D009740 4.5e-18 95.5 182 69.8
Sp3g19900 Schrenkiella parvula HOM05D007783 ORTHO05D009740 7.6e-18 94.7 91 74.7
Manes.07G029300 Manihot esculenta HOM05D007783 ORTHO05D009740 2.0e-10 70.1 89 49.4
FvH4_6g43650 Fragaria vesca HOM05D007783 ORTHO05D009740 7.6e-10 68.2 69 55.1
Potri.007G120101 Populus trichocarpa HOM05D007783 ORTHO05D009740 9.9e-10 67.8 91 48.4
THA.LOC104802538 Tarenaya hassleriana HOM05D007783 ORTHO05D009740 1.7e-09 67.0 84 61.9
FAN05G3706 Fragaria x ananassa HOM05D007783 ORTHO05D009740 2.2e-09 66.6 69 55.1
FAN14G2245 Fragaria x ananassa HOM05D007783 ORTHO05D009740 3.8e-09 65.9 69 53.6
Ciclev10017097m.g Citrus clementina HOM05D007783 ORTHO05D009740 4.9e-09 65.5 93 55.9
FAN09G3630 Fragaria x ananassa HOM05D007783 ORTHO05D009740 4.9e-09 65.5 62 61.3
Manes.10G111600 Manihot esculenta HOM05D007783 ORTHO05D009740 2.4e-08 63.2 55 60.0
COL.COLO4_13003 Corchorus olitorius HOM05D007783 ORTHO05D009740 7.1e-08 61.6 63 58.7
QL08p033993 Quercus lobata HOM05D007783 ORTHO05D009740 7.1e-08 61.6 61 55.7
Thecc.02G163100 Theobroma cacao HOM05D007783 ORTHO05D009740 9.3e-08 61.2 58 62.1
CiPaw.03G163700 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.2e-07 60.8 62 58.1
Gohir.A04G107200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 2.1e-07 60.1 90 46.7
Oeu041963.1 Olea europaea HOM05D007783 ORTHO05D009740 2.7e-07 59.7 53 60.4
Cfa014450 Carpinus fangiana HOM05D007783 ORTHO05D009740 3.5e-07 59.3 63 55.6
Migut.H01214 Erythranthe guttata HOM05D007783 ORTHO05D009740 3.5e-07 59.3 66 51.5
Gohir.A12G135100 Gossypium hirsutum HOM05D007783 ORTHO05D009740 3.5e-07 59.3 48 66.7
Peaxi162Scf00007g01310 Petunia axillaris HOM05D007783 ORTHO05D009740 3.5e-07 59.3 59 57.6
TWI36G1428 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 3.5e-07 59.3 48 66.7
Cfa021131 Carpinus fangiana HOM05D007783 ORTHO05D009740 4.6e-07 58.9 92 48.9
Sopen07g026300 Solanum pennellii HOM05D007783 ORTHO05D009740 4.6e-07 58.9 70 48.6
Cpa.g.sc8.247 Carica papaya HOM05D007783 ORTHO05D009740 6.0e-07 58.5 53 56.6
Sed0000870 Sechium edule HOM05D007783 ORTHO05D009740 6.0e-07 58.5 47 66.0
CiPaw.04G118600 Carya illinoinensis HOM05D007783 ORTHO05D009740 1.0e-06 57.8 47 59.6
MELO3C018795.2 Cucumis melo HOM05D007783 ORTHO05D009740 1.0e-06 57.8 59 57.6
Dinv10909 Davidia involucrata HOM05D007783 ORTHO05D009740 1.0e-06 57.8 45 66.7
Gohir.D04G147200 Gossypium hirsutum HOM05D007783 ORTHO05D009740 1.0e-06 57.8 90 48.9
Medtr2g089010 Medicago truncatula HOM05D007783 ORTHO05D009740 1.0e-06 57.8 58 56.9
RcHm_v2.0_Chr2g0160271 Rosa chinensis HOM05D007783 ORTHO05D009740 1.0e-06 57.8 66 51.5
Solyc07g052680.1 Solanum lycopersicum HOM05D007783 ORTHO05D009740 1.0e-06 57.8 62 53.2
PGSC0003DMG400026167 Solanum tuberosum HOM05D007783 ORTHO05D009740 1.0e-06 57.8 62 53.2
CSS0007715 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 1.3e-06 57.4 54 61.1
Gorai.012G133100 Gossypium raimondii HOM05D007783 ORTHO05D009740 1.3e-06 57.4 89 46.1
TWI18G0657 Tripterygium wilfordii HOM05D007783 ORTHO05D009740 1.3e-06 57.4 48 64.6
ClCG02G001700 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.8e-06 57.0 59 57.6
HanXRQChr17g0563901 Helianthus annuus HOM05D007783 ORTHO05D009740 1.8e-06 57.0 49 57.1
Sed0005014 Sechium edule HOM05D007783 ORTHO05D009740 1.8e-06 57.0 47 66.0
Cfa014449 Carpinus fangiana HOM05D007783 ORTHO05D009740 2.3e-06 56.6 88 46.6
BcaB04g20549 Brassica carinata HOM05D007783 ORTHO05D009740 3.0e-06 56.2 183 65.6
Lj3g0010205 Lotus japonicus HOM05D007783 ORTHO05D009740 3.0e-06 56.2 63 50.8
Nitab4.5_0002949g0070 Nicotiana tabacum HOM05D007783 ORTHO05D009740 3.0e-06 56.2 61 50.8
Cfa021551 Carpinus fangiana HOM05D007783 ORTHO05D009740 3.9e-06 55.8 88 47.7
Glyma.13G305400 Glycine max HOM05D007783 ORTHO05D009740 3.9e-06 55.8 63 52.4
Rhsim06G0156700 Rhododendron simsii HOM05D000213 ORTHO05D009740 3.9e-06 55.8 57 54.4
Actinidia30505 Actinidia chinensis HOM05D007783 ORTHO05D009740 5.1e-06 55.5 45 62.2
MSTRG.12290 Avicennia marina HOM05D007783 ORTHO05D009740 5.1e-06 55.5 87 43.7
Aqoxy4G02125 Aquilegia oxysepala HOM05D007783 ORTHO05D009740 6.7e-06 55.1 62 54.8
CSS0046432 Camellia sinensis var. sinensis HOM05D007783 ORTHO05D009740 6.7e-06 55.1 54 59.3
Cc00_g19250 Coffea canephora HOM05D007783 ORTHO05D009740 6.7e-06 55.1 66 54.5
Gohir.D12G138800 Gossypium hirsutum HOM05D007783 ORTHO05D009740 6.7e-06 55.1 56 60.7
Gorai.008G150200 Gossypium raimondii HOM05D007783 ORTHO05D009740 6.7e-06 55.1 56 60.7
ECA246G5319 Erigeron canadensis HOM05D007783 ORTHO05D009740 8.7e-06 54.7 92 41.3
Lsat_1_v5_gn_8_129821 Lactuca sativa HOM05D007783 ORTHO05D009740 8.7e-06 54.7 112 48.2
VMungo1080G1091 Vigna mungo HOM05D007783 ORTHO05D009740 8.7e-06 54.7 85 42.4


User provided reference genes

Program Settings