Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G36062 Arabidopsis lyrata HOM05D000707 ORTHO05D001462 3.9e-33 144.1 65 100.0
AL3G36066 Arabidopsis lyrata HOM05D000707 ORTHO05D001462 1.3e-15 85.9 48 79.2
AL3G36040 Arabidopsis lyrata HOM05D000707 ORTHO05D001462 1.1e-14 82.8 47 78.7
Carub.0003s2195 Capsella rubella HOM05D000707 ORTHO05D001462 5.3e-14 80.5 49 71.4
CARHR221980 Cardamine hirsuta HOM05D000707 ORTHO05D001462 5.3e-14 80.5 58 56.9
Atru.chr6.3139 Acer truncatum HOM05D000707 ORTHO05D001462 9.0e-14 79.7 61 54.1
BcaB04g20554 Brassica carinata HOM05D000707 ORTHO05D001462 2.0e-13 78.6 50 70.0
BcaC09g49126 Brassica carinata HOM05D000707 ORTHO05D001462 2.0e-13 78.6 50 70.0
BcaC09g49128 Brassica carinata HOM05D000707 ORTHO05D001462 2.0e-13 78.6 50 70.0
Sp3g19850 Schrenkiella parvula HOM05D000707 ORTHO05D001462 2.6e-13 78.2 48 72.9
Hma1.2p1_0439F.1_g153160 Hydrangea macrophylla HOM05D000707 ORTHO05D001462 7.6e-13 76.6 61 54.1
Rhsim04G0056700 Rhododendron simsii HOM05D000707 ORTHO05D001462 1.3e-12 75.9 62 53.2
Rhsim04G0056800 Rhododendron simsii HOM05D000707 ORTHO05D001462 1.3e-12 75.9 62 53.2
AT3G21880 Arabidopsis thaliana HOM05D000707 ORTHO05D001462 1.7e-12 75.5 47 72.3
Ciclev10015305m.g Citrus clementina HOM05D000707 ORTHO05D001462 1.7e-12 75.5 59 54.2
Actinidia24274 Actinidia chinensis HOM05D000707 ORTHO05D001462 2.9e-12 74.7 60 55.0
CARHR097840 Cardamine hirsuta HOM05D000707 ORTHO05D001462 3.8e-12 74.3 48 70.8
Thhalv10020880m.g Eutrema salsugineum HOM05D000707 ORTHO05D001462 5.0e-12 73.9 48 68.8
Cc05_g05160 Coffea canephora HOM05D000707 ORTHO05D001462 8.4e-12 73.2 61 52.5
Lj8C122T16 Lonicera japonica HOM05D000707 ORTHO05D001462 1.1e-11 72.8 61 50.8
Peaxi162Scf00007g01220 Petunia axillaris HOM05D000707 ORTHO05D001462 1.4e-11 72.4 61 54.1
Rhsim06G0157800 Rhododendron simsii HOM05D000707 ORTHO05D001462 1.9e-11 72.0 61 50.8
Phvul.005G113300 Phaseolus vulgaris HOM05D000707 ORTHO05D001462 2.5e-11 71.6 61 52.5
vmacro12230 Vaccinium macrocarpon HOM05D000707 ORTHO05D001462 2.5e-11 71.6 61 50.8
BcaC09g49124 Brassica carinata HOM05D000707 ORTHO05D001462 5.5e-11 70.5 48 64.6
A01p33100 Brassica napus HOM05D000707 ORTHO05D001462 5.5e-11 70.5 48 64.6
C01p42330 Brassica napus HOM05D000707 ORTHO05D001462 5.5e-11 70.5 48 64.6
BolC1t04188H Brassica oleracea HOM05D000707 ORTHO05D001462 5.5e-11 70.5 48 64.6
BraA01t03433Z Brassica rapa HOM05D000707 ORTHO05D001462 5.5e-11 70.5 48 64.6
Hma1.2p1_0613F.1_g189220 Hydrangea macrophylla HOM05D000707 ORTHO05D001462 5.5e-11 70.5 61 55.7
Potri.017G039301 Populus trichocarpa HOM05D000707 ORTHO05D001462 7.2e-11 70.1 61 50.8
SGA_v2.0_scaffold159G37582 Striga asiatica HOM05D000707 ORTHO05D001462 9.3e-11 69.7 60 46.7
GSVIVG01030628001 Vitis vinifera HOM05D000707 ORTHO05D001462 9.3e-11 69.7 61 49.2
Sabra17G0026300 Salix brachista HOM05D000707 ORTHO05D001462 2.1e-10 68.6 61 49.2
Aqoxy4G02098 Aquilegia oxysepala HOM05D000707 ORTHO05D001462 7.9e-10 66.6 56 48.2
AL7G40360 Arabidopsis lyrata HOM05D000707 ORTHO05D001462 7.9e-10 66.6 49 55.1
Oeu007124.1 Olea europaea HOM05D000707 ORTHO05D001462 1.3e-09 65.9 52 53.8
SalBow8G3524 Salvia bowleyana HOM05D000707 ORTHO05D008764 1.3e-09 65.9 60 45.0
Thhalv10025713m.g Eutrema salsugineum HOM05D000707 ORTHO05D001462 3.9e-09 64.3 48 58.3
Manes.13G073566 Manihot esculenta HOM05D000707 ORTHO05D001462 3.9e-09 64.3 61 47.5
Oeu045851.1 Olea europaea HOM05D000707 ORTHO05D001462 3.9e-09 64.3 52 51.9
MSTRG.2209 Avicennia marina HOM05D000707 ORTHO05D008764 8.7e-09 63.2 60 45.0
Aa31LG8G8440 Aethionema arabicum HOM05D000707 ORTHO05D001462 1.1e-08 62.8 45 60.0
HanXRQChr08g0213211 Helianthus annuus HOM05D000707 ORTHO05D008764 1.5e-08 62.4 60 45.0
Hund25024 Selenicereus undatus HOM05D000707 ORTHO05D008764 1.5e-08 62.4 61 42.6
BcaC09g49130 Brassica carinata HOM05D000707 ORTHO05D001462 1.9e-08 62.0 61 49.2
PSO541G5309 Papaver somniferum HOM05D000707 ORTHO05D001462 1.9e-08 62.0 60 41.7
PSO675G7969 Papaver somniferum HOM05D000707 ORTHO05D001462 1.9e-08 62.0 60 43.3
Peaxi162Scf00416g00214 Petunia axillaris HOM05D000707 ORTHO05D001462 1.9e-08 62.0 55 50.9
unitig_22.g5579 Utricularia gibba HOM05D000707 ORTHO05D008764 1.9e-08 62.0 61 42.6
FvH4_6g43570 Fragaria vesca HOM05D000707 ORTHO05D001462 3.3e-08 61.2 48 50.0
FAN02G2049 Fragaria x ananassa HOM05D000707 ORTHO05D001462 3.3e-08 61.2 48 50.0
FAN09G1935 Fragaria x ananassa HOM05D000707 ORTHO05D001462 3.3e-08 61.2 48 50.0
FAN14G0208 Fragaria x ananassa HOM05D000707 ORTHO05D001462 3.3e-08 61.2 48 50.0
Solyc04g007470.3 Solanum lycopersicum HOM05D000707 ORTHO05D008764 3.3e-08 61.2 60 43.3
Sopen04g002550 Solanum pennellii HOM05D000707 ORTHO05D008764 3.3e-08 61.2 60 43.3
PGSC0003DMG400005997 Solanum tuberosum HOM05D000707 ORTHO05D008764 3.3e-08 61.2 60 43.3
unitig_24.g30587 Utricularia gibba HOM05D000707 ORTHO05D008764 3.3e-08 61.2 61 42.6
Actinidia20604 Actinidia chinensis HOM05D000707 ORTHO05D001462 4.3e-08 60.8 48 50.0
Actinidia20618 Actinidia chinensis HOM05D000707 ORTHO05D001462 4.3e-08 60.8 48 50.0
Carub.0007s2669 Capsella rubella HOM05D000707 ORTHO05D001462 4.3e-08 60.8 48 52.1
Gohir.D05G316200 Gossypium hirsutum HOM05D000707 ORTHO05D008764 4.3e-08 60.8 60 43.3
Gorai.009G338600 Gossypium raimondii HOM05D000707 ORTHO05D008764 4.3e-08 60.8 60 43.3
HanXRQChr10g0297461 Helianthus annuus HOM05D000707 ORTHO05D001462 4.3e-08 60.8 59 45.8
Manes.14G108200 Manihot esculenta HOM05D000707 ORTHO05D008764 4.3e-08 60.8 61 44.3
HPP92_008835 Vanilla planifolia HOM05D000707 ORTHO05D001462 4.3e-08 60.8 60 40.0
AT4G15250 Arabidopsis thaliana HOM05D000707 ORTHO05D001462 5.7e-08 60.5 47 55.3
FAN05G2453 Fragaria x ananassa HOM05D000707 ORTHO05D001462 5.7e-08 60.5 48 50.0
TAR626G0596 Trochodendron aralioides HOM05D000707 ORTHO05D001462 5.7e-08 60.5 48 50.0
VMungo0540G1995 Vigna mungo HOM05D000707 ORTHO05D001462 5.7e-08 60.5 48 50.0
Lj8C138T2 Lonicera japonica HOM05D000707 ORTHO05D001462 7.4e-08 60.1 48 54.2
AUR62002793 Chenopodium quinoa HOM05D000707 ORTHO05D008764 9.7e-08 59.7 61 41.0
AUR62014102 Chenopodium quinoa HOM05D000707 ORTHO05D008764 9.7e-08 59.7 61 41.0
DCAR_008751 Daucus carota HOM05D000707 ORTHO05D001462 9.7e-08 59.7 48 52.1
RcHm_v2.0_Chr2g0160151 Rosa chinensis HOM05D000707 ORTHO05D001462 9.7e-08 59.7 51 45.1
TWI18G0317 Tripterygium wilfordii HOM05D000707 ORTHO05D001462 9.7e-08 59.7 48 52.1
Cfa014200 Carpinus fangiana HOM05D000707 ORTHO05D001462 1.3e-07 59.3 47 51.1
SalBow1G3130 Salvia bowleyana HOM05D000707 ORTHO05D001462 1.3e-07 59.3 53 50.9
Ah.01g014580 Amaranthus hybridus HOM05D000707 ORTHO05D001462 1.6e-07 58.9 48 50.0
DCAR_012741 Daucus carota HOM05D000707 ORTHO05D001462 1.6e-07 58.9 48 50.0
Lsat_1_v5_gn_4_68520 Lactuca sativa HOM05D000707 ORTHO05D001462 1.6e-07 58.9 56 46.4
Hund25494 Selenicereus undatus HOM05D000707 ORTHO05D004608 1.6e-07 58.9 52 50.0
CAN.G10.10 Capsicum annuum HOM05D000707 ORTHO05D008764 2.2e-07 58.5 60 41.7
Gohir.A05G314900 Gossypium hirsutum HOM05D000707 ORTHO05D008764 2.2e-07 58.5 58 43.1
Sp7g13470 Schrenkiella parvula HOM05D000707 ORTHO05D001462 2.2e-07 58.5 47 55.3
Manes.06G064000 Manihot esculenta HOM05D000707 ORTHO05D008764 2.8e-07 58.2 61 42.6
DCAR_019663 Daucus carota HOM05D000707 ORTHO05D001462 3.7e-07 57.8 48 47.9
CSS0038806 Camellia sinensis var. sinensis HOM05D000707 ORTHO05D001462 4.8e-07 57.4 48 54.2
Nitab4.5_0003877g0010 Nicotiana tabacum HOM05D000707 ORTHO05D008764 4.8e-07 57.4 60 43.3
ATR0053G049 Amborella trichopoda HOM05D000707 ORTHO05D008764 6.3e-07 57.0 56 44.6
DCAR_021082 Daucus carota HOM05D000707 ORTHO05D001462 6.3e-07 57.0 48 45.8
Hund28219 Selenicereus undatus HOM05D000707 ORTHO05D004608 6.3e-07 57.0 57 42.1
Hund28224 Selenicereus undatus HOM05D000707 ORTHO05D004608 6.3e-07 57.0 57 42.1
MBI10_g08542_MAGBIO Magnolia biondii HOM05D000707 ORTHO05D008764 8.2e-07 56.6 60 43.3
MD16G1035900 Malus domestica HOM05D000707 ORTHO05D008764 8.2e-07 56.6 61 41.0
Medtr7g083540 Medicago truncatula HOM05D000707 ORTHO05D004608 8.2e-07 56.6 56 44.6
Prupe.1G318100 Prunus persica HOM05D000707 ORTHO05D008764 8.2e-07 56.6 61 36.1
TPR.G5748 Trifolium pratense HOM05D000707 ORTHO05D004608 8.2e-07 56.6 56 44.6
Cfa014441 Carpinus fangiana HOM05D000707 ORTHO05D001462 1.1e-06 56.2 48 50.0
FAN07G1047 Fragaria x ananassa HOM05D006456 ORTHO05D008764 1.1e-06 56.2 61 34.4
Peaxi162Scf00564g00613 Petunia axillaris HOM05D000707 ORTHO05D008764 1.1e-06 56.2 60 40.0
BcaC06g30815 Brassica carinata HOM05D000707 ORTHO05D001462 1.4e-06 55.8 53 41.5
Ca_08115_v3 Cicer arietinum L. HOM05D000707 ORTHO05D004608 1.4e-06 55.8 56 42.9
FvH4_4g26550 Fragaria vesca HOM05D000707 ORTHO05D008764 1.4e-06 55.8 61 34.4
FAN12G0878 Fragaria x ananassa HOM05D006456 ORTHO05D007588 1.4e-06 55.8 61 34.4
Nitab4.5_0001176g0170 Nicotiana tabacum HOM05D000707 ORTHO05D001462 1.4e-06 55.8 62 40.3
arahy.Tifrunner.gnm1.ann1.5RG53P Arachis hypogaea HOM05D000707 ORTHO05D008764 1.8e-06 55.5 61 37.7
arahy.Tifrunner.gnm1.ann1.C30NXK Arachis hypogaea HOM05D000707 ORTHO05D008764 1.8e-06 55.5 61 37.7
Psat3g094880 Pisum sativum HOM05D000707 ORTHO05D004608 1.8e-06 55.5 56 42.9
Thecc.02G219600 Theobroma cacao HOM05D000707 ORTHO05D008764 1.8e-06 55.5 58 41.4
Aa31LG9G2170 Aethionema arabicum HOM05D000707 ORTHO05D001462 2.4e-06 55.1 48 45.8
Manes.11G079100 Manihot esculenta HOM05D000707 ORTHO05D004608 2.4e-06 55.1 57 40.4
Manes.13G073500 Manihot esculenta HOM05D000707 ORTHO05D001462 2.4e-06 55.1 47 51.1
Manes.13G091300 Manihot esculenta HOM05D000707 ORTHO05D001462 2.4e-06 55.1 47 51.1
PGR083G0349 Punica granatum HOM05D000707 ORTHO05D001462 2.4e-06 55.1 47 46.8
QL08p033891 Quercus lobata HOM05D000707 ORTHO05D001462 2.4e-06 55.1 47 51.1
Actinidia34010 Actinidia chinensis HOM05D000707 ORTHO05D004608 3.1e-06 54.7 51 45.1
CANSAT64G2905 Cannabis sativa HOM05D000707 ORTHO05D001462 3.1e-06 54.7 47 53.2
Gohir.A03G151100 Gossypium hirsutum HOM05D000707 ORTHO05D004608 3.1e-06 54.7 55 41.8
Nn1g06992 Nelumbo nucifera HOM05D000707 ORTHO05D001462 3.1e-06 54.7 47 44.7
Pp3c5_12180 Physcomitrium patens HOM05D000707 ORTHO05D001462 3.1e-06 54.7 51 43.1
TAR624G0679 Trochodendron aralioides HOM05D000707 ORTHO05D001462 3.1e-06 54.7 47 46.8
Os09g0509700 Oryza sativa ssp. japonica HOM05D000707 ORTHO05D004608 4.1e-06 54.3 55 40.0
DCAR_026755 Daucus carota HOM05D000707 ORTHO05D008764 5.3e-06 53.9 53 37.7
Medtr1g109350 Medicago truncatula HOM05D000707 ORTHO05D008764 5.3e-06 53.9 61 36.1
Psat6g223840 Pisum sativum HOM05D000707 ORTHO05D008764 5.3e-06 53.9 61 36.1
Prupe.3G220900 Prunus persica HOM05D000707 ORTHO05D001462 5.3e-06 53.9 47 51.1
TPR.G4924 Trifolium pratense HOM05D000707 ORTHO05D008764 5.3e-06 53.9 61 36.1
Cpa.g.sc65.76 Carica papaya HOM05D000707 ORTHO05D008764 6.9e-06 53.5 56 41.1
Ca_11123_v3 Cicer arietinum L. HOM05D000707 ORTHO05D008764 6.9e-06 53.5 61 36.1
ClCG02G008420 Citrullus lanatus HOM05D000707 ORTHO05D001462 6.9e-06 53.5 47 48.9
Peaxi162Scf00012g03214 Petunia axillaris HOM05D000707 ORTHO05D001462 6.9e-06 53.5 47 51.1
Cpa.g.sc8.239 Carica papaya HOM05D000707 ORTHO05D001462 9.0e-06 53.1 47 46.8
Haze_12902 Corylus avellana HOM05D000707 ORTHO05D001462 9.0e-06 53.1 47 48.9
Lj1g0021723 Lotus japonicus HOM05D000707 ORTHO05D004608 9.0e-06 53.1 56 42.9


User provided reference genes

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